Wall clock time and date at job start Mon Mar 30 2020 03:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00595 * 2 1 3 5 5 O 1.21274 * 120.00413 * 120.26898 * 4 2 1 6 6 N 1.34784 * 119.99635 * 299.99856 * 4 2 1 7 7 C 1.46499 * 119.99893 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.09004 * 109.46973 * 359.97438 * 8 6 4 10 10 C 1.52996 * 109.47349 * 119.99826 * 8 6 4 11 11 C 1.50702 * 109.47429 * 240.00150 * 8 6 4 12 12 H 1.08001 * 119.99527 * 359.97438 * 11 8 6 13 13 C 1.37868 * 120.00320 * 179.97438 * 11 8 6 14 14 N 1.31524 * 119.99919 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00122 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47057 * 60.00585 * 15 13 11 17 17 H 1.48498 * 109.47125 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47277 * 300.00370 * 15 13 11 19 19 C 1.53002 * 109.46903 * 240.00515 * 2 1 3 20 20 C 1.53938 * 113.73494 * 156.72756 * 19 2 1 21 21 N 1.47958 * 86.17878 * 221.91791 * 20 19 2 22 22 C 1.47956 * 90.76651 * 24.69105 * 21 20 19 23 23 H 1.09008 * 109.47290 * 299.99459 * 1 2 3 24 24 H 1.09005 * 109.47504 * 59.99649 * 1 2 3 25 25 H 1.08997 * 109.47563 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47008 * 90.00348 * 7 6 4 27 27 H 1.08997 * 109.46865 * 210.00034 * 7 6 4 28 28 H 1.08998 * 109.47058 * 329.99547 * 7 6 4 29 29 H 1.09009 * 109.47102 * 300.00533 * 10 8 6 30 30 H 1.08998 * 109.47017 * 59.99612 * 10 8 6 31 31 H 1.08996 * 109.47637 * 180.02562 * 10 8 6 32 32 H 0.97001 * 119.99710 * 179.97438 * 14 13 11 33 33 H 1.09004 * 112.93453 * 288.43257 * 19 2 1 34 34 H 1.08998 * 113.75836 * 336.23653 * 20 19 2 35 35 H 1.08998 * 113.75504 * 107.60246 * 20 19 2 36 36 H 1.00904 * 111.00071 * 271.79368 * 21 20 19 37 37 H 1.09002 * 113.76222 * 220.99458 * 22 21 20 38 38 H 1.09002 * 113.76514 * 89.62224 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7336 -1.6936 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 0.8640 0.9407 2.5890 8 6 2.1947 -0.9410 3.6506 9 1 2.7996 -1.7979 3.3539 10 6 3.0450 0.0201 4.4837 11 6 1.0223 -1.4144 4.4708 12 1 0.0145 -1.2195 4.1348 13 6 1.2362 -2.0961 5.6499 14 7 2.4634 -2.3329 6.0593 15 14 -0.2170 -2.6821 6.6668 16 1 -1.0431 -3.6145 5.8583 17 1 0.2776 -3.3827 7.8791 18 1 -1.0408 -1.5148 7.0716 19 6 2.0399 -0.7212 -1.2493 20 6 3.4669 -0.3153 -1.6599 21 7 2.9603 -0.3145 -3.0501 22 6 1.5821 -0.0737 -2.5688 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.1837 0.6424 2.6226 27 1 1.1218 1.4662 3.5085 28 1 1.0272 1.5995 1.7361 29 1 3.8930 0.3625 3.8905 30 1 2.4398 0.8767 4.7804 31 1 3.4084 -0.4941 5.3734 32 1 2.6139 -2.8122 6.8891 33 1 1.8822 -1.7991 -1.2117 34 1 3.7640 0.6698 -1.3002 35 1 4.2150 -1.0838 -1.4656 36 1 3.0434 -1.2302 -3.4658 37 1 0.8243 -0.6491 -3.1006 38 1 1.3278 0.9821 -2.4748 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129234305.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:16 Heat of formation + Delta-G solvation = -0.937903 kcal Electronic energy + Delta-G solvation = -18120.736987 eV Core-core repulsion = 15385.475058 eV Total energy + Delta-G solvation = -2735.261929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.16623 -38.49693 -35.30581 -33.63186 -32.30227 -29.20213 -26.79699 -26.11829 -25.80064 -25.22377 -23.47201 -20.98782 -19.78520 -18.28850 -16.78041 -16.40538 -16.02968 -15.40140 -14.72268 -14.58817 -13.81724 -13.76548 -13.39585 -12.92683 -12.55408 -12.43747 -12.34497 -12.08568 -11.91600 -11.58634 -11.29862 -11.15591 -11.04708 -10.82176 -10.69016 -10.61009 -10.39629 -10.25664 -10.14207 -9.17451 -8.84858 -8.48736 -8.41276 -7.56385 -6.07175 -4.15302 3.27043 3.32240 3.33153 3.43059 3.92938 4.07666 4.39023 4.55012 4.79805 5.09000 5.23688 5.27048 5.40932 5.46125 5.52256 5.65741 5.76590 5.81097 5.84921 5.93204 5.99619 6.03412 6.08997 6.22502 6.34079 6.42722 6.76661 6.82650 7.06344 7.27166 7.45067 7.53258 7.71985 8.02030 8.20464 8.55981 8.83812 9.08877 9.51392 10.98031 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038955 B = 0.006006 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.602239 B = 4660.833936 C = 4820.653865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 H 0.090 0.910 4 C 0.508 3.492 5 O -0.554 6.554 6 N -0.593 5.593 7 C 0.086 3.914 8 C 0.257 3.743 9 H 0.062 0.938 10 C -0.147 4.147 11 C -0.525 4.525 12 H 0.058 0.942 13 C 0.064 3.936 14 N -0.888 5.888 15 Si 0.899 3.101 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.130 4.130 20 C 0.026 3.974 21 N -0.665 5.665 22 C 0.021 3.979 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.011 0.989 30 H 0.030 0.970 31 H 0.093 0.907 32 H 0.264 0.736 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.335 0.665 37 H 0.070 0.930 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.296 6.868 -11.575 13.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.125 4.125 3 H 0.108 0.892 4 C 0.294 3.706 5 O -0.433 6.433 6 N -0.323 5.323 7 C -0.058 4.058 8 C 0.157 3.843 9 H 0.080 0.920 10 C -0.205 4.205 11 C -0.563 4.563 12 H 0.076 0.924 13 C -0.138 4.138 14 N -0.527 5.527 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.150 4.150 20 C -0.104 4.104 21 N -0.291 5.291 22 C -0.109 4.109 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.149 0.851 37 H 0.088 0.912 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.535 6.982 -11.826 13.966 hybrid contribution -1.229 -1.155 1.246 2.097 sum -3.764 5.828 -10.581 12.652 Atomic orbital electron populations 1.21982 0.93319 1.02925 1.02848 1.21318 0.97436 1.00155 0.93579 0.89157 1.20368 0.80854 0.84802 0.84551 1.90622 1.39111 1.27082 1.86498 1.48206 1.49168 1.27983 1.06977 1.21685 0.94789 0.87773 1.01541 1.18918 0.94177 0.91386 0.79818 0.91984 1.22090 0.97266 0.98971 1.02193 1.21280 0.92591 1.36476 1.06000 0.92422 1.24896 0.95897 0.95628 0.97389 1.69875 1.19286 1.40752 1.22753 0.86557 0.82456 0.78915 0.79454 1.20300 1.21165 1.20244 1.24028 0.96247 1.01208 0.93532 1.23632 0.96365 1.02030 0.88336 1.65079 1.10079 1.34689 1.19260 1.23706 0.92009 1.01485 0.93735 0.90714 0.92163 0.92322 0.93067 0.91102 0.92780 0.97024 0.95137 0.88850 0.92652 0.88389 0.88912 0.90607 0.85114 0.91178 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.63 37.15 0.32 -1.61 16 2 C -0.10 -1.49 1.68 -91.78 -0.15 -1.64 16 3 H 0.09 1.17 7.20 -51.93 -0.37 0.80 16 4 C 0.51 10.29 7.07 -10.98 -0.08 10.22 16 5 O -0.55 -13.44 15.18 5.56 0.08 -13.36 16 6 N -0.59 -12.49 2.75 -175.27 -0.48 -12.97 16 7 C 0.09 1.42 8.04 59.85 0.48 1.90 16 8 C 0.26 6.58 2.63 -69.08 -0.18 6.40 16 9 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 10 C -0.15 -3.52 8.95 37.16 0.33 -3.19 16 11 C -0.52 -14.19 8.37 -34.44 -0.29 -14.48 16 12 H 0.06 1.53 7.64 -52.49 -0.40 1.13 16 13 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 14 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 15 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 C -0.13 -1.76 2.70 -89.68 -0.24 -2.01 16 20 C 0.03 0.35 8.45 -2.77 -0.02 0.32 16 21 N -0.66 -7.92 8.55 -117.03 -1.00 -8.92 16 22 C 0.02 0.22 7.52 -2.77 -0.02 0.20 16 23 H 0.07 0.93 4.53 -51.92 -0.24 0.70 16 24 H 0.06 0.59 7.43 -51.93 -0.39 0.21 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.81 6.95 -51.93 -0.36 0.45 16 27 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 28 H 0.05 0.70 6.01 -51.93 -0.31 0.39 16 29 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 31 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.10 1.50 7.85 -51.93 -0.41 1.10 16 34 H 0.09 1.21 7.96 -51.93 -0.41 0.80 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.33 3.56 8.89 -39.29 -0.35 3.21 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 LS Contribution 297.49 15.07 4.48 4.48 Total: -1.00 -30.71 297.49 -7.10 -37.81 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.84 Total: 3.75 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 0.05 Total: -2.22 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.86 Total: -46.49 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.71 -7.10 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129234305.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.870 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds