Wall clock time and date at job start Mon Mar 30 2020 03:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00595 * 2 1 3 5 5 O 1.21274 * 120.00413 * 120.26898 * 4 2 1 6 6 N 1.34784 * 119.99635 * 299.99856 * 4 2 1 7 7 C 1.46499 * 119.99893 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.09004 * 109.46973 * 359.97438 * 8 6 4 10 10 C 1.52996 * 109.47349 * 119.99826 * 8 6 4 11 11 C 1.50702 * 109.47429 * 240.00150 * 8 6 4 12 12 H 1.08001 * 119.99527 * 359.97438 * 11 8 6 13 13 C 1.37868 * 120.00320 * 179.97438 * 11 8 6 14 14 N 1.31524 * 119.99919 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00122 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47057 * 60.00585 * 15 13 11 17 17 H 1.48498 * 109.47125 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47277 * 300.00370 * 15 13 11 19 19 C 1.53002 * 109.46903 * 240.00515 * 2 1 3 20 20 C 1.53938 * 113.73494 * 156.72756 * 19 2 1 21 21 N 1.47958 * 86.17878 * 221.91791 * 20 19 2 22 22 C 1.47956 * 90.76651 * 24.69105 * 21 20 19 23 23 H 1.09008 * 109.47290 * 299.99459 * 1 2 3 24 24 H 1.09005 * 109.47504 * 59.99649 * 1 2 3 25 25 H 1.08997 * 109.47563 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47008 * 90.00348 * 7 6 4 27 27 H 1.08997 * 109.46865 * 210.00034 * 7 6 4 28 28 H 1.08998 * 109.47058 * 329.99547 * 7 6 4 29 29 H 1.09009 * 109.47102 * 300.00533 * 10 8 6 30 30 H 1.08998 * 109.47017 * 59.99612 * 10 8 6 31 31 H 1.08996 * 109.47637 * 180.02562 * 10 8 6 32 32 H 0.97001 * 119.99710 * 179.97438 * 14 13 11 33 33 H 1.09004 * 112.93453 * 288.43257 * 19 2 1 34 34 H 1.08998 * 113.75836 * 336.23653 * 20 19 2 35 35 H 1.08998 * 113.75504 * 107.60246 * 20 19 2 36 36 H 1.00904 * 111.00071 * 271.79368 * 21 20 19 37 37 H 1.09002 * 113.76222 * 220.99458 * 22 21 20 38 38 H 1.09002 * 113.76514 * 89.62224 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7336 -1.6936 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 0.8640 0.9407 2.5890 8 6 2.1947 -0.9410 3.6506 9 1 2.7996 -1.7979 3.3539 10 6 3.0450 0.0201 4.4837 11 6 1.0223 -1.4144 4.4708 12 1 0.0145 -1.2195 4.1348 13 6 1.2362 -2.0961 5.6499 14 7 2.4634 -2.3329 6.0593 15 14 -0.2170 -2.6821 6.6668 16 1 -1.0431 -3.6145 5.8583 17 1 0.2776 -3.3827 7.8791 18 1 -1.0408 -1.5148 7.0716 19 6 2.0399 -0.7212 -1.2493 20 6 3.4669 -0.3153 -1.6599 21 7 2.9603 -0.3145 -3.0501 22 6 1.5821 -0.0737 -2.5688 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.1837 0.6424 2.6226 27 1 1.1218 1.4662 3.5085 28 1 1.0272 1.5995 1.7361 29 1 3.8930 0.3625 3.8905 30 1 2.4398 0.8767 4.7804 31 1 3.4084 -0.4941 5.3734 32 1 2.6139 -2.8122 6.8891 33 1 1.8822 -1.7991 -1.2117 34 1 3.7640 0.6698 -1.3002 35 1 4.2150 -1.0838 -1.4656 36 1 3.0434 -1.2302 -3.4658 37 1 0.8243 -0.6491 -3.1006 38 1 1.3278 0.9821 -2.4748 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129234305.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:16 Heat of formation + Delta-G solvation = -23.583512 kcal Electronic energy + Delta-G solvation = -18121.718974 eV Core-core repulsion = 15385.475058 eV Total energy + Delta-G solvation = -2736.243916 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.43919 -39.84372 -37.09826 -35.21931 -33.92921 -31.03993 -27.98969 -27.42196 -27.26755 -26.76848 -24.84665 -22.53858 -20.98246 -19.84450 -18.54110 -17.82484 -17.44559 -17.02650 -16.33040 -16.13394 -15.22024 -14.95980 -14.83690 -14.42774 -14.01588 -13.62700 -13.53168 -13.49879 -13.25282 -13.07548 -12.94032 -12.81576 -12.67445 -12.36443 -12.30409 -12.16158 -12.12965 -11.65370 -11.44921 -11.16952 -10.59245 -10.37495 -9.47642 -9.28262 -8.14914 -6.31927 1.40414 1.42683 1.50210 1.86387 2.33043 2.51356 3.10049 3.12615 3.46745 3.73014 3.84581 4.25787 4.28745 4.39245 4.52862 4.61598 4.68391 4.73813 4.78333 4.78832 4.85214 4.87161 4.93080 5.00750 5.04027 5.07475 5.14429 5.30681 5.38359 5.46832 5.63554 5.68169 6.04377 6.16333 6.36645 6.76366 6.88557 7.33264 7.52428 8.89069 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038955 B = 0.006006 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.602239 B = 4660.833936 C = 4820.653865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 H 0.118 0.882 4 C 0.495 3.505 5 O -0.607 6.607 6 N -0.601 5.601 7 C 0.081 3.919 8 C 0.260 3.740 9 H 0.005 0.995 10 C -0.132 4.132 11 C -0.537 4.537 12 H 0.060 0.940 13 C 0.013 3.987 14 N -0.919 5.919 15 Si 0.965 3.035 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.261 1.261 19 C -0.136 4.136 20 C 0.022 3.978 21 N -0.666 5.666 22 C 0.037 3.963 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.019 0.981 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.264 0.736 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.340 0.660 37 H 0.088 0.912 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.443 8.944 -12.724 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.136 0.864 4 C 0.284 3.716 5 O -0.489 6.489 6 N -0.331 5.331 7 C -0.061 4.061 8 C 0.158 3.842 9 H 0.023 0.977 10 C -0.191 4.191 11 C -0.576 4.576 12 H 0.078 0.922 13 C -0.186 4.186 14 N -0.558 5.558 15 Si 0.790 3.210 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.186 1.186 19 C -0.156 4.156 20 C -0.108 4.108 21 N -0.293 5.293 22 C -0.092 4.092 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.155 0.845 37 H 0.106 0.894 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.709 9.098 -12.995 16.547 hybrid contribution -0.513 -1.830 1.568 2.464 sum -5.221 7.267 -11.427 14.514 Atomic orbital electron populations 1.21997 0.91311 1.02382 1.04930 1.21347 0.98850 1.00507 0.90371 0.86431 1.21531 0.79817 0.84395 0.85859 1.90594 1.41395 1.29629 1.87310 1.48221 1.49744 1.29072 1.06013 1.21967 0.94326 0.86426 1.03332 1.18498 0.93532 0.90611 0.81573 0.97718 1.21871 0.97506 0.98826 1.00867 1.21548 0.92972 1.36735 1.06320 0.92166 1.25758 0.98506 0.95702 0.98638 1.70028 1.21334 1.41319 1.23115 0.85507 0.79137 0.78715 0.77643 1.20344 1.20964 1.18564 1.24040 0.96842 0.99947 0.94746 1.23620 0.95960 1.01649 0.89523 1.65101 1.10882 1.35187 1.18090 1.23766 0.91774 1.02513 0.91151 0.90331 0.88310 0.94229 0.92196 0.91496 0.88502 0.96227 0.93260 0.91550 0.92688 0.91082 0.88314 0.92636 0.84514 0.89352 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.63 71.98 0.62 -2.62 16 2 C -0.09 -2.38 1.68 -11.54 -0.02 -2.40 16 3 H 0.12 2.55 7.20 -2.39 -0.02 2.54 16 4 C 0.49 20.18 7.07 87.65 0.62 20.80 16 5 O -0.61 -30.95 15.18 -3.01 -0.05 -30.99 16 6 N -0.60 -25.21 2.75 -826.81 -2.28 -27.48 16 7 C 0.08 2.48 8.04 127.77 1.03 3.51 16 8 C 0.26 13.72 2.63 44.24 0.12 13.83 16 9 H 0.00 0.31 6.90 -2.38 -0.02 0.29 16 10 C -0.13 -6.45 8.95 71.98 0.64 -5.81 16 11 C -0.54 -29.42 8.37 25.60 0.21 -29.20 16 12 H 0.06 3.18 7.64 -2.91 -0.02 3.16 16 13 C 0.01 0.74 5.30 84.65 0.45 1.19 16 14 N -0.92 -53.62 11.32 21.45 0.24 -53.38 16 15 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 19 C -0.14 -3.49 2.70 -10.14 -0.03 -3.52 16 20 C 0.02 0.58 8.45 86.41 0.73 1.31 16 21 N -0.67 -14.49 8.55 -524.19 -4.48 -18.97 16 22 C 0.04 0.68 7.52 86.41 0.65 1.33 16 23 H 0.08 1.66 4.53 -2.38 -0.01 1.65 16 24 H 0.10 1.43 7.43 -2.38 -0.02 1.41 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.73 6.95 -2.39 -0.02 1.72 16 27 H 0.07 2.09 6.43 -2.39 -0.02 2.08 16 28 H 0.10 2.10 6.01 -2.39 -0.01 2.09 16 29 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.05 2.16 6.66 -2.39 -0.02 2.14 16 31 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 32 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.07 2.22 7.85 -2.38 -0.02 2.20 16 34 H 0.10 2.42 7.96 -2.39 -0.02 2.40 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.34 6.76 8.89 -89.69 -0.80 5.96 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 1.70 8.06 -2.39 -0.02 1.68 16 Total: -1.00 -70.14 297.49 0.75 -69.40 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.26 Total: 17.77 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.03 Total: -1.58 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -6.52 Total: -99.83 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.05 Total: -30.99 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -70.14 0.75 -69.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129234305.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.814 kcal (2) G-P(sol) polarization free energy of solvation -70.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds