Wall clock time and date at job start Mon Mar 30 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46615 * 2 1 4 4 C 1.50693 * 109.46915 * 239.99979 * 2 1 3 5 5 H 1.08001 * 120.00433 * 273.27083 * 4 2 1 6 6 C 1.37880 * 120.00100 * 93.28139 * 4 2 1 7 7 N 1.31511 * 120.00594 * 173.66239 * 6 4 2 8 8 Si 1.86805 * 119.99782 * 353.65376 * 6 4 2 9 9 H 1.48505 * 109.46574 * 94.75911 * 8 6 4 10 10 H 1.48499 * 109.47221 * 214.75862 * 8 6 4 11 11 H 1.48495 * 109.47289 * 334.76142 * 8 6 4 12 12 N 1.46492 * 109.47056 * 119.99772 * 2 1 3 13 13 C 1.46506 * 120.00229 * 66.61537 * 12 2 1 14 14 C 1.34778 * 120.00190 * 246.61483 * 12 2 1 15 15 O 1.21277 * 120.00185 * 185.28533 * 14 12 2 16 16 C 1.50694 * 119.99959 * 5.28113 * 14 12 2 17 17 H 1.09003 * 109.47293 * 48.28337 * 16 14 12 18 18 C 1.53000 * 109.47387 * 288.28549 * 16 14 12 19 19 C 1.53004 * 109.47469 * 168.28353 * 16 14 12 20 20 C 1.53936 * 113.72879 * 276.73141 * 19 16 14 21 21 N 1.47965 * 86.17818 * 221.91796 * 20 19 16 22 22 C 1.47957 * 90.76096 * 24.69136 * 21 20 19 23 23 H 1.08997 * 109.47187 * 294.35922 * 1 2 3 24 24 H 1.09002 * 109.46471 * 174.36516 * 1 2 3 25 25 H 1.08996 * 109.47128 * 54.36827 * 1 2 3 26 26 H 0.96994 * 120.00755 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.46700 * 95.05983 * 13 12 2 28 28 H 1.08998 * 109.47227 * 215.06221 * 13 12 2 29 29 H 1.09003 * 109.46853 * 335.06450 * 13 12 2 30 30 H 1.09001 * 109.47099 * 298.50611 * 18 16 14 31 31 H 1.09000 * 109.46832 * 58.50488 * 18 16 14 32 32 H 1.08998 * 109.47125 * 178.50482 * 18 16 14 33 33 H 1.08994 * 112.93457 * 48.42971 * 19 16 14 34 34 H 1.09001 * 113.76510 * 336.22870 * 20 19 16 35 35 H 1.09000 * 113.76023 * 107.60251 * 20 19 16 36 36 H 1.00906 * 110.99769 * 271.80064 * 21 20 19 37 37 H 1.09003 * 113.75663 * 220.99084 * 22 21 20 38 38 H 1.08998 * 113.75816 * 89.62981 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1620 -1.7825 -1.2199 6 6 2.3266 0.0084 -2.3697 7 7 2.8814 -0.5909 -3.4004 8 14 1.9368 1.8336 -2.4491 9 1 3.1412 2.6139 -2.0670 10 1 1.5319 2.1936 -3.8317 11 1 0.8278 2.1442 -1.5117 12 7 2.0184 -0.6905 1.1961 13 6 1.7878 -2.1283 1.3574 14 6 2.6798 -0.0032 2.1483 15 8 3.1673 -0.5896 3.0913 16 6 2.8136 1.4940 2.0411 17 1 1.8396 1.9310 1.8210 18 6 3.7931 1.8393 0.9176 19 6 3.3372 2.0554 3.3646 20 6 2.2391 2.2802 4.4197 21 7 2.9298 3.5531 4.7233 22 6 3.5113 3.5848 3.3632 23 1 -0.3633 0.4239 0.9361 24 1 -0.3632 -1.0228 -0.1009 25 1 -0.3633 0.5987 -0.8352 26 1 3.0881 -0.0854 -4.2020 27 1 2.6596 -2.6781 1.0027 28 1 1.6199 -2.3535 2.4106 29 1 0.9123 -2.4230 0.7788 30 1 4.7739 1.4248 1.1505 31 1 3.4335 1.4167 -0.0206 32 1 3.8696 2.9225 0.8225 33 1 4.2057 1.5152 3.7412 34 1 1.2433 2.4111 3.9963 35 1 2.2632 1.5613 5.2387 36 1 3.6469 3.4181 5.4202 37 1 4.5520 3.9083 3.3381 38 1 2.8876 4.0972 2.6308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129234502.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:18 Heat of formation + Delta-G solvation = -0.564685 kcal Electronic energy + Delta-G solvation = -18523.201723 eV Core-core repulsion = 15787.955978 eV Total energy + Delta-G solvation = -2735.245745 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.21185 -38.58890 -35.70499 -33.04182 -32.56648 -30.07469 -26.81450 -26.60456 -25.63378 -25.36474 -22.94694 -21.19259 -19.96682 -18.21807 -17.34608 -16.61938 -16.04707 -15.43092 -14.84105 -14.33532 -13.88963 -13.68793 -13.53952 -13.00029 -12.68720 -12.46952 -12.33304 -12.23990 -12.12505 -11.86221 -11.65288 -11.37465 -11.16456 -11.03392 -10.70721 -10.54799 -10.42040 -10.32662 -9.98836 -9.41091 -8.98619 -8.77687 -8.48189 -7.72071 -6.29878 -4.31519 3.08144 3.18256 3.21257 3.29744 3.82482 4.07338 4.18536 4.54931 4.83475 5.00353 5.21141 5.35695 5.48260 5.56307 5.64502 5.70138 5.81715 5.87243 5.92566 5.98949 6.03536 6.16672 6.18144 6.25123 6.31272 6.36425 6.42011 6.51594 6.57679 6.77896 6.92486 7.28458 7.30871 7.53459 8.04271 8.46862 8.74932 8.89711 9.30360 10.82663 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.009085 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.566671 B = 3081.343546 C = 3675.665597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.061 0.939 4 C -0.527 4.527 5 H 0.081 0.919 6 C 0.080 3.920 7 N -0.886 5.886 8 Si 0.856 3.144 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.256 1.256 12 N -0.586 5.586 13 C 0.100 3.900 14 C 0.514 3.486 15 O -0.571 6.571 16 C -0.100 4.100 17 H 0.091 0.909 18 C -0.157 4.157 19 C -0.132 4.132 20 C 0.023 3.977 21 N -0.663 5.663 22 C 0.020 3.980 23 H 0.027 0.973 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.267 0.733 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.334 0.666 37 H 0.071 0.929 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 6.418 9.465 11.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.113 3.887 3 H 0.079 0.921 4 C -0.565 4.565 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.522 5.522 8 Si 0.682 3.318 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.180 1.180 12 N -0.316 5.316 13 C -0.043 4.043 14 C 0.301 3.699 15 O -0.452 6.452 16 C -0.122 4.122 17 H 0.109 0.891 18 C -0.214 4.214 19 C -0.152 4.152 20 C -0.107 4.107 21 N -0.289 5.289 22 C -0.110 4.110 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.148 0.852 37 H 0.090 0.910 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.591 6.742 9.776 11.981 hybrid contribution 0.530 0.062 -0.563 0.776 sum -1.062 6.803 9.213 11.501 Atomic orbital electron populations 1.22375 0.98609 1.01380 0.99202 1.19581 0.91060 0.94170 0.83871 0.92124 1.21116 1.44689 0.96418 0.94324 0.90113 1.24938 0.93792 0.98026 0.95702 1.69882 1.40389 1.36844 1.05126 0.87240 0.79903 0.86217 0.78421 1.19487 1.20859 1.18029 1.48234 1.54246 1.08838 1.20281 1.21343 1.01166 0.81559 1.00255 1.20434 0.78134 0.89366 0.81931 1.90575 1.49158 1.71241 1.34252 1.21268 1.01081 0.93370 0.96490 0.89127 1.22034 0.99144 1.01569 0.98640 1.24069 0.99984 0.96024 0.95125 1.23668 0.98264 0.90862 0.97859 1.65088 1.25117 1.33393 1.05301 1.23717 0.99916 0.94823 0.92516 0.95381 0.92870 0.92431 0.92255 0.93283 0.92746 0.91250 0.92122 0.89713 0.92085 0.88138 0.88807 0.90853 0.85196 0.90998 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 8.96 37.16 0.33 -2.71 16 2 C 0.21 4.61 1.31 -69.09 -0.09 4.52 16 3 H 0.06 1.28 2.00 -51.93 -0.10 1.17 16 4 C -0.53 -13.49 8.70 -34.44 -0.30 -13.79 16 5 H 0.08 2.28 7.43 -52.49 -0.39 1.89 16 6 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -25.23 13.96 55.43 0.77 -24.46 16 8 Si 0.86 19.08 25.11 -169.99 -4.27 14.81 16 9 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.26 -5.28 5.78 56.52 0.33 -4.95 16 12 N -0.59 -12.13 2.75 -175.26 -0.48 -12.61 16 13 C 0.10 1.92 9.12 59.85 0.55 2.46 16 14 C 0.51 10.29 6.94 -10.99 -0.08 10.21 16 15 O -0.57 -12.51 15.54 5.56 0.09 -12.43 16 16 C -0.10 -1.67 1.63 -91.77 -0.15 -1.82 16 17 H 0.09 1.46 7.33 -51.93 -0.38 1.08 16 18 C -0.16 -2.68 8.53 37.16 0.32 -2.36 16 19 C -0.13 -1.89 2.82 -89.69 -0.25 -2.14 16 20 C 0.02 0.31 8.45 -2.76 -0.02 0.29 16 21 N -0.66 -8.18 8.56 -117.03 -1.00 -9.18 16 22 C 0.02 0.24 7.55 -2.77 -0.02 0.22 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 1.00 7.16 -51.93 -0.37 0.63 16 25 H 0.06 1.11 6.60 -51.93 -0.34 0.77 16 26 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.97 7.66 -51.93 -0.40 0.58 16 29 H 0.07 1.25 6.92 -51.93 -0.36 0.89 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.70 3.92 -51.93 -0.20 1.49 16 32 H 0.06 0.88 7.49 -51.93 -0.39 0.49 16 33 H 0.10 1.55 7.69 -51.93 -0.40 1.15 16 34 H 0.09 1.25 7.96 -51.93 -0.41 0.84 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.33 3.58 8.89 -39.29 -0.35 3.23 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 1.17 8.07 -51.93 -0.42 0.75 16 LS Contribution 293.53 15.07 4.42 4.42 Total: -1.00 -28.90 293.53 -6.13 -35.03 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.84 Total: 7.53 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 0.19 Total: -3.11 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.71 Total: -46.25 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.27 Total: 14.81 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.90 -6.13 -35.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129234502.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.462 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds