Wall clock time and date at job start Mon Mar 30 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46615 * 2 1 4 4 C 1.50693 * 109.46915 * 239.99979 * 2 1 3 5 5 H 1.08001 * 120.00433 * 273.27083 * 4 2 1 6 6 C 1.37880 * 120.00100 * 93.28139 * 4 2 1 7 7 N 1.31511 * 120.00594 * 173.66239 * 6 4 2 8 8 Si 1.86805 * 119.99782 * 353.65376 * 6 4 2 9 9 H 1.48505 * 109.46574 * 94.75911 * 8 6 4 10 10 H 1.48499 * 109.47221 * 214.75862 * 8 6 4 11 11 H 1.48495 * 109.47289 * 334.76142 * 8 6 4 12 12 N 1.46492 * 109.47056 * 119.99772 * 2 1 3 13 13 C 1.46506 * 120.00229 * 66.61537 * 12 2 1 14 14 C 1.34778 * 120.00190 * 246.61483 * 12 2 1 15 15 O 1.21277 * 120.00185 * 185.28533 * 14 12 2 16 16 C 1.50694 * 119.99959 * 5.28113 * 14 12 2 17 17 H 1.09003 * 109.47293 * 48.28337 * 16 14 12 18 18 C 1.53000 * 109.47387 * 288.28549 * 16 14 12 19 19 C 1.53004 * 109.47469 * 168.28353 * 16 14 12 20 20 C 1.53936 * 113.72879 * 276.73141 * 19 16 14 21 21 N 1.47965 * 86.17818 * 221.91796 * 20 19 16 22 22 C 1.47957 * 90.76096 * 24.69136 * 21 20 19 23 23 H 1.08997 * 109.47187 * 294.35922 * 1 2 3 24 24 H 1.09002 * 109.46471 * 174.36516 * 1 2 3 25 25 H 1.08996 * 109.47128 * 54.36827 * 1 2 3 26 26 H 0.96994 * 120.00755 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.46700 * 95.05983 * 13 12 2 28 28 H 1.08998 * 109.47227 * 215.06221 * 13 12 2 29 29 H 1.09003 * 109.46853 * 335.06450 * 13 12 2 30 30 H 1.09001 * 109.47099 * 298.50611 * 18 16 14 31 31 H 1.09000 * 109.46832 * 58.50488 * 18 16 14 32 32 H 1.08998 * 109.47125 * 178.50482 * 18 16 14 33 33 H 1.08994 * 112.93457 * 48.42971 * 19 16 14 34 34 H 1.09001 * 113.76510 * 336.22870 * 20 19 16 35 35 H 1.09000 * 113.76023 * 107.60251 * 20 19 16 36 36 H 1.00906 * 110.99769 * 271.80064 * 21 20 19 37 37 H 1.09003 * 113.75663 * 220.99084 * 22 21 20 38 38 H 1.08998 * 113.75816 * 89.62981 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1620 -1.7825 -1.2199 6 6 2.3266 0.0084 -2.3697 7 7 2.8814 -0.5909 -3.4004 8 14 1.9368 1.8336 -2.4491 9 1 3.1412 2.6139 -2.0670 10 1 1.5319 2.1936 -3.8317 11 1 0.8278 2.1442 -1.5117 12 7 2.0184 -0.6905 1.1961 13 6 1.7878 -2.1283 1.3574 14 6 2.6798 -0.0032 2.1483 15 8 3.1673 -0.5896 3.0913 16 6 2.8136 1.4940 2.0411 17 1 1.8396 1.9310 1.8210 18 6 3.7931 1.8393 0.9176 19 6 3.3372 2.0554 3.3646 20 6 2.2391 2.2802 4.4197 21 7 2.9298 3.5531 4.7233 22 6 3.5113 3.5848 3.3632 23 1 -0.3633 0.4239 0.9361 24 1 -0.3632 -1.0228 -0.1009 25 1 -0.3633 0.5987 -0.8352 26 1 3.0881 -0.0854 -4.2020 27 1 2.6596 -2.6781 1.0027 28 1 1.6199 -2.3535 2.4106 29 1 0.9123 -2.4230 0.7788 30 1 4.7739 1.4248 1.1505 31 1 3.4335 1.4167 -0.0206 32 1 3.8696 2.9225 0.8225 33 1 4.2057 1.5152 3.7412 34 1 1.2433 2.4111 3.9963 35 1 2.2632 1.5613 5.2387 36 1 3.6469 3.4181 5.4202 37 1 4.5520 3.9083 3.3381 38 1 2.8876 4.0972 2.6308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129234502.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:18 Heat of formation + Delta-G solvation = -22.109015 kcal Electronic energy + Delta-G solvation = -18524.135955 eV Core-core repulsion = 15787.955978 eV Total energy + Delta-G solvation = -2736.179977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.53954 -39.88908 -37.40445 -34.51464 -34.35945 -31.79148 -28.22887 -27.84077 -27.21666 -26.66473 -24.33720 -22.80115 -21.10604 -19.75721 -19.17810 -17.99653 -17.29568 -17.03495 -16.44952 -15.93087 -15.33252 -15.13438 -14.81849 -14.48694 -14.29527 -13.98365 -13.65805 -13.48190 -13.40365 -13.36683 -13.09048 -12.93080 -12.67423 -12.47378 -12.37714 -12.06900 -11.72707 -11.69065 -11.50663 -11.21008 -10.77486 -10.55216 -9.47611 -9.40364 -8.31486 -6.38541 1.35105 1.39352 1.48317 1.71775 2.28903 2.32885 3.05720 3.10965 3.41505 3.70663 3.78362 4.22611 4.24436 4.31194 4.35623 4.52492 4.57918 4.58268 4.71986 4.74704 4.75855 4.81573 4.82994 4.85995 4.90833 4.99562 5.04620 5.07815 5.25714 5.34108 5.35743 5.53941 5.82641 6.11445 6.39703 6.67461 6.74820 7.24055 7.33838 8.84748 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.009085 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.566671 B = 3081.343546 C = 3675.665597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.219 3.781 3 H 0.074 0.926 4 C -0.528 4.528 5 H 0.037 0.963 6 C 0.024 3.976 7 N -0.941 5.941 8 Si 0.912 3.088 9 H -0.254 1.254 10 H -0.289 1.289 11 H -0.223 1.223 12 N -0.595 5.595 13 C 0.101 3.899 14 C 0.507 3.493 15 O -0.594 6.594 16 C -0.095 4.095 17 H 0.105 0.895 18 C -0.155 4.155 19 C -0.134 4.134 20 C 0.024 3.976 21 N -0.663 5.663 22 C 0.030 3.970 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.268 0.732 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.343 0.657 37 H 0.089 0.911 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 9.255 10.791 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.117 3.883 3 H 0.092 0.908 4 C -0.567 4.567 5 H 0.055 0.945 6 C -0.176 4.176 7 N -0.580 5.580 8 Si 0.735 3.265 9 H -0.178 1.178 10 H -0.216 1.216 11 H -0.145 1.145 12 N -0.325 5.325 13 C -0.043 4.043 14 C 0.296 3.704 15 O -0.476 6.476 16 C -0.117 4.117 17 H 0.123 0.877 18 C -0.213 4.213 19 C -0.154 4.154 20 C -0.106 4.106 21 N -0.290 5.290 22 C -0.100 4.100 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.158 0.842 37 H 0.107 0.893 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.459 9.578 11.138 14.895 hybrid contribution 0.849 -0.967 -0.936 1.591 sum -1.610 8.611 10.202 13.447 Atomic orbital electron populations 1.22291 0.96520 1.01695 1.00780 1.19511 0.92496 0.94143 0.82169 0.90822 1.21306 1.44265 0.94736 0.96349 0.94509 1.25802 0.93458 1.03239 0.95051 1.70046 1.42675 1.39125 1.06125 0.86320 0.81349 0.80100 0.78779 1.17806 1.21552 1.14501 1.48302 1.54599 1.09288 1.20328 1.21347 1.00662 0.81201 1.01051 1.21122 0.77082 0.90958 0.81212 1.90559 1.49785 1.72176 1.35110 1.21332 1.01905 0.90634 0.97813 0.87680 1.22019 0.98681 1.03493 0.97073 1.24091 0.99812 0.97477 0.93980 1.23661 0.98207 0.91270 0.97416 1.65091 1.25570 1.32571 1.05770 1.23758 1.01193 0.92627 0.92433 0.92634 0.93165 0.92097 0.92340 0.95156 0.91469 0.90523 0.92740 0.92639 0.88811 0.89628 0.88476 0.91239 0.84213 0.89299 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 8.96 71.98 0.64 -4.92 16 2 C 0.22 9.08 1.31 44.25 0.06 9.13 16 3 H 0.07 2.90 2.00 -2.39 0.00 2.89 16 4 C -0.53 -27.44 8.70 25.60 0.22 -27.21 16 5 H 0.04 2.18 7.43 -2.91 -0.02 2.15 16 6 C 0.02 1.25 5.47 84.66 0.46 1.72 16 7 N -0.94 -55.23 13.96 21.45 0.30 -54.93 16 8 Si 0.91 37.98 25.11 68.60 1.72 39.70 16 9 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.22 -8.00 5.78 99.48 0.58 -7.42 16 12 N -0.60 -24.20 2.75 -826.80 -2.28 -26.48 16 13 C 0.10 3.89 9.12 127.77 1.17 5.05 16 14 C 0.51 19.67 6.94 87.65 0.61 20.28 16 15 O -0.59 -25.64 15.54 -3.02 -0.05 -25.69 16 16 C -0.09 -2.92 1.63 -11.54 -0.02 -2.94 16 17 H 0.11 2.95 7.33 -2.39 -0.02 2.93 16 18 C -0.16 -4.89 8.53 71.98 0.61 -4.27 16 19 C -0.13 -3.46 2.82 -10.15 -0.03 -3.49 16 20 C 0.02 0.58 8.45 86.41 0.73 1.31 16 21 N -0.66 -14.15 8.56 -524.16 -4.48 -18.63 16 22 C 0.03 0.60 7.55 86.40 0.65 1.25 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 1.82 7.16 -2.39 -0.02 1.80 16 25 H 0.06 2.15 6.60 -2.39 -0.02 2.13 16 26 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 2.39 7.66 -2.39 -0.02 2.37 16 29 H 0.08 2.79 6.92 -2.39 -0.02 2.78 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 2.09 3.92 -2.39 -0.01 2.08 16 32 H 0.09 2.31 7.49 -2.39 -0.02 2.29 16 33 H 0.09 2.49 7.69 -2.39 -0.02 2.47 16 34 H 0.10 2.27 7.96 -2.39 -0.02 2.25 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.34 6.33 8.89 -89.69 -0.80 5.53 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.10 2.02 8.07 -2.39 -0.02 2.00 16 Total: -1.00 -63.29 293.53 0.45 -62.83 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.13 Total: 27.28 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 5.11 Total: -4.08 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -6.46 Total: -100.05 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.72 Total: 39.70 kcal Total: -63.29 0.45 -62.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129234502.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.726 kcal (2) G-P(sol) polarization free energy of solvation -63.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds