Wall clock time and date at job start Mon Mar 30 2020 03:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.46739 * 2 1 4 4 C 1.46498 * 119.99818 * 269.99202 * 3 2 1 5 5 C 1.50697 * 109.47469 * 270.00714 * 4 3 2 6 6 H 1.08003 * 119.99863 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00170 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99899 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99978 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47408 * 89.99895 * 9 7 5 11 11 H 1.48500 * 109.47423 * 210.00468 * 9 7 5 12 12 H 1.48503 * 109.46953 * 330.00070 * 9 7 5 13 13 C 1.34773 * 120.00159 * 90.00323 * 3 2 1 14 14 O 1.21280 * 120.00254 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99955 * 359.97438 * 13 3 2 16 16 C 1.53001 * 109.47176 * 180.02562 * 15 13 3 17 17 H 1.08996 * 109.47352 * 54.99707 * 16 15 13 18 18 N 1.46905 * 109.46947 * 294.99937 * 16 15 13 19 19 C 1.53001 * 109.47190 * 175.00119 * 16 15 13 20 20 C 1.53005 * 117.49698 * 248.74299 * 19 16 15 21 21 C 1.53001 * 117.49867 * 180.08387 * 19 16 15 22 22 H 1.09001 * 109.46719 * 60.00386 * 1 2 3 23 23 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47613 * 300.00562 * 1 2 3 25 25 H 1.09000 * 109.47274 * 239.99848 * 2 1 3 26 26 H 1.09001 * 109.46719 * 119.99613 * 2 1 3 27 27 H 1.09006 * 109.47017 * 30.00562 * 4 3 2 28 28 H 1.09007 * 109.47275 * 150.00301 * 4 3 2 29 29 H 0.97002 * 119.99478 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47177 * 60.00678 * 15 13 3 31 31 H 1.09001 * 109.47215 * 300.00275 * 15 13 3 32 32 H 1.00901 * 110.99869 * 176.04901 * 18 16 15 33 33 H 1.00896 * 110.99543 * 300.00023 * 18 16 15 34 34 H 1.08999 * 115.55273 * 34.41507 * 19 16 15 35 35 H 1.08995 * 117.49745 * 0.02562 * 20 19 16 36 36 H 1.08996 * 117.49514 * 145.02210 * 20 19 16 37 37 H 1.08997 * 117.50296 * 214.97733 * 21 19 16 38 38 H 1.08999 * 117.49872 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3904 -2.8775 8 7 5.3918 2.1841 -3.2568 9 14 3.0133 3.4358 -3.9288 10 1 3.1158 4.8560 -3.5070 11 1 3.4068 3.3135 -5.3554 12 1 1.6137 2.9691 -3.7597 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1672 15 6 1.9914 1.3064 2.4722 16 6 2.3223 2.2440 3.6352 17 1 1.7567 3.1695 3.5280 18 7 3.7601 2.5451 3.6274 19 6 1.9497 1.5687 4.9566 20 6 0.7729 2.1525 5.7410 21 6 2.2041 2.3516 6.2463 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5818 1.6876 -2.0284 28 1 2.0955 3.1411 -1.1385 29 1 5.7178 2.5745 -4.0827 30 1 2.6213 0.4188 2.5302 31 1 0.9433 1.0125 2.5298 32 1 3.9935 3.2132 4.3467 33 1 4.3065 1.7025 3.7256 34 1 2.0890 0.4881 4.9881 35 1 0.2639 3.0172 5.3155 36 1 0.1383 1.4559 6.2888 37 1 2.5103 1.7861 7.1263 38 1 2.6372 3.3475 6.1534 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129803212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:17 Heat of formation + Delta-G solvation = -14.652684 kcal Electronic energy + Delta-G solvation = -17694.838972 eV Core-core repulsion = 14958.982326 eV Total energy + Delta-G solvation = -2735.856646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.30385 -37.88131 -35.21816 -33.57276 -32.59275 -30.29802 -29.48003 -27.33584 -24.15604 -22.86329 -22.48866 -21.81842 -20.16600 -18.11762 -16.83896 -16.43958 -16.26007 -15.29197 -15.13109 -14.64204 -14.32455 -14.02176 -13.38560 -13.25869 -12.89217 -12.39414 -12.27917 -11.94274 -11.88635 -11.74589 -11.49964 -11.22944 -11.12748 -10.87110 -10.57188 -10.47476 -10.37731 -10.30763 -10.06285 -9.43384 -8.73959 -8.49957 -8.29575 -7.53319 -5.99901 -3.97172 3.35097 3.40971 3.43016 3.58874 3.62555 3.95928 4.47425 4.54957 4.67264 4.75827 4.96079 5.12981 5.25313 5.33045 5.34998 5.44053 5.45996 5.59973 5.66883 5.70101 5.76883 5.88200 5.92609 5.98667 6.08175 6.22702 6.26909 6.47478 6.83360 7.07380 7.43136 7.53572 7.71940 7.72816 8.46087 8.58726 9.04650 9.25125 9.61658 11.13843 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031041 B = 0.006015 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.821983 B = 4653.561490 C = 5091.802725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.601 5.601 4 C 0.218 3.782 5 C -0.522 4.522 6 H 0.074 0.926 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.511 3.489 14 O -0.518 6.518 15 C -0.130 4.130 16 C 0.140 3.860 17 H 0.085 0.915 18 N -0.819 5.819 19 C -0.191 4.191 20 C -0.175 4.175 21 C -0.181 4.181 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.026 0.974 28 H 0.034 0.966 29 H 0.263 0.737 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.336 0.664 33 H 0.334 0.666 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.407 -4.773 15.293 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.016 4.016 3 N -0.334 5.334 4 C 0.097 3.903 5 C -0.561 4.561 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.297 3.703 14 O -0.393 6.393 15 C -0.170 4.170 16 C 0.028 3.972 17 H 0.103 0.897 18 N -0.346 5.346 19 C -0.211 4.211 20 C -0.213 4.213 21 C -0.218 4.218 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.161 -3.811 14.365 18.004 hybrid contribution -0.459 -0.103 0.356 0.590 sum -10.620 -3.914 14.721 18.570 Atomic orbital electron populations 1.22241 0.97078 1.01343 1.02123 1.21372 0.93144 0.84288 1.02789 1.47936 1.65100 1.13223 1.07105 1.19573 0.97064 0.93306 0.80361 1.21366 0.95425 1.32467 1.06830 0.90819 1.24861 0.94961 0.95877 0.97419 1.69909 1.15144 1.45299 1.23572 0.86854 0.81492 0.81667 0.79665 1.19979 1.21209 1.19156 1.20126 0.78382 0.87144 0.84670 1.90679 1.43810 1.17964 1.86835 1.21735 1.02481 0.99308 0.93520 1.20761 0.90170 0.97262 0.89050 0.89681 1.58775 1.03748 1.16643 1.55464 1.23445 1.03904 0.99640 0.94151 1.22957 0.91045 1.03356 1.03911 1.22900 0.99700 1.01807 0.97373 0.92343 0.92203 0.93031 0.90075 0.91633 0.95639 0.94801 0.92719 0.89719 0.89474 0.85141 0.85363 0.87981 0.88633 0.89050 0.89010 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.63 2.46 -175.05 -0.43 -13.06 16 4 C 0.22 5.50 4.23 -5.20 -0.02 5.48 16 5 C -0.52 -15.44 9.94 -34.44 -0.34 -15.79 16 6 H 0.07 2.39 8.06 -52.48 -0.42 1.97 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 9 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 10 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 C 0.51 10.58 7.53 -10.99 -0.08 10.50 16 14 O -0.52 -13.05 14.93 5.56 0.08 -12.97 16 15 C -0.13 -1.90 3.88 -27.88 -0.11 -2.00 16 16 C 0.14 1.90 2.52 -67.71 -0.17 1.73 16 17 H 0.09 1.31 7.71 -51.93 -0.40 0.91 16 18 N -0.82 -12.02 8.35 -4.66 -0.04 -12.06 16 19 C -0.19 -1.94 5.33 -90.62 -0.48 -2.43 16 20 C -0.17 -1.60 10.18 -26.69 -0.27 -1.87 16 21 C -0.18 -1.63 9.87 -26.69 -0.26 -1.89 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 25 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 26 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 27 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 28 H 0.03 0.92 6.85 -51.93 -0.36 0.56 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.08 1.14 7.40 -51.93 -0.38 0.75 16 31 H 0.09 1.07 7.19 -51.93 -0.37 0.70 16 32 H 0.34 4.27 8.30 -39.29 -0.33 3.94 16 33 H 0.33 4.45 9.00 -39.29 -0.35 4.10 16 34 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.86 7.74 -51.93 -0.40 0.46 16 LS Contribution 311.19 15.07 4.69 4.69 Total: -1.00 -34.84 311.19 -7.29 -42.13 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.21 Total: 5.79 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.48 Total: -4.37 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.30 Total: -52.79 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.84 -7.29 -42.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129803212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.479 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds