Wall clock time and date at job start Mon Mar 30 2020 03:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.46739 * 2 1 4 4 C 1.46498 * 119.99818 * 269.99202 * 3 2 1 5 5 C 1.50697 * 109.47469 * 270.00714 * 4 3 2 6 6 H 1.08003 * 119.99863 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00170 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99899 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99978 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47408 * 89.99895 * 9 7 5 11 11 H 1.48500 * 109.47423 * 210.00468 * 9 7 5 12 12 H 1.48503 * 109.46953 * 330.00070 * 9 7 5 13 13 C 1.34773 * 120.00159 * 90.00323 * 3 2 1 14 14 O 1.21280 * 120.00254 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99955 * 359.97438 * 13 3 2 16 16 C 1.53001 * 109.47176 * 180.02562 * 15 13 3 17 17 H 1.08996 * 109.47352 * 54.99707 * 16 15 13 18 18 N 1.46905 * 109.46947 * 294.99937 * 16 15 13 19 19 C 1.53001 * 109.47190 * 175.00119 * 16 15 13 20 20 C 1.53005 * 117.49698 * 248.74299 * 19 16 15 21 21 C 1.53001 * 117.49867 * 180.08387 * 19 16 15 22 22 H 1.09001 * 109.46719 * 60.00386 * 1 2 3 23 23 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47613 * 300.00562 * 1 2 3 25 25 H 1.09000 * 109.47274 * 239.99848 * 2 1 3 26 26 H 1.09001 * 109.46719 * 119.99613 * 2 1 3 27 27 H 1.09006 * 109.47017 * 30.00562 * 4 3 2 28 28 H 1.09007 * 109.47275 * 150.00301 * 4 3 2 29 29 H 0.97002 * 119.99478 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47177 * 60.00678 * 15 13 3 31 31 H 1.09001 * 109.47215 * 300.00275 * 15 13 3 32 32 H 1.00901 * 110.99869 * 176.04901 * 18 16 15 33 33 H 1.00896 * 110.99543 * 300.00023 * 18 16 15 34 34 H 1.08999 * 115.55273 * 34.41507 * 19 16 15 35 35 H 1.08995 * 117.49745 * 0.02562 * 20 19 16 36 36 H 1.08996 * 117.49514 * 145.02210 * 20 19 16 37 37 H 1.08997 * 117.50296 * 214.97733 * 21 19 16 38 38 H 1.08999 * 117.49872 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3904 -2.8775 8 7 5.3918 2.1841 -3.2568 9 14 3.0133 3.4358 -3.9288 10 1 3.1158 4.8560 -3.5070 11 1 3.4068 3.3135 -5.3554 12 1 1.6137 2.9691 -3.7597 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1672 15 6 1.9914 1.3064 2.4722 16 6 2.3223 2.2440 3.6352 17 1 1.7567 3.1695 3.5280 18 7 3.7601 2.5451 3.6274 19 6 1.9497 1.5687 4.9566 20 6 0.7729 2.1525 5.7410 21 6 2.2041 2.3516 6.2463 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5818 1.6876 -2.0284 28 1 2.0955 3.1411 -1.1385 29 1 5.7178 2.5745 -4.0827 30 1 2.6213 0.4188 2.5302 31 1 0.9433 1.0125 2.5298 32 1 3.9935 3.2132 4.3467 33 1 4.3065 1.7025 3.7256 34 1 2.0890 0.4881 4.9881 35 1 0.2639 3.0172 5.3155 36 1 0.1383 1.4559 6.2888 37 1 2.5103 1.7861 7.1263 38 1 2.6372 3.3475 6.1534 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129803212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:16 Heat of formation + Delta-G solvation = -40.146425 kcal Electronic energy + Delta-G solvation = -17695.944464 eV Core-core repulsion = 14958.982326 eV Total energy + Delta-G solvation = -2736.962138 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77941 -38.90174 -36.83818 -34.91176 -34.51203 -31.92732 -30.76641 -29.11451 -25.51538 -24.29727 -23.43834 -23.16836 -21.13243 -19.68394 -19.07085 -17.79116 -17.54603 -16.85224 -16.24528 -16.00933 -15.94232 -15.20330 -14.70714 -14.64785 -14.53417 -14.15098 -13.76862 -13.36160 -13.21556 -12.88071 -12.69922 -12.54994 -12.45346 -12.32205 -12.16012 -11.99371 -11.77587 -11.71390 -11.21982 -11.14294 -10.81083 -10.40599 -9.36633 -9.27554 -8.31986 -6.35818 1.31870 1.36621 1.44858 2.03190 2.32157 2.43187 2.87647 3.02401 3.60592 3.68729 3.92125 4.04034 4.14732 4.20778 4.22192 4.45287 4.48614 4.55369 4.65980 4.75900 4.79923 4.85384 4.96824 5.03321 5.03985 5.05063 5.08975 5.26166 5.30554 5.42245 5.51152 5.76161 6.29639 6.41031 6.65242 6.69735 6.88449 7.25649 7.64957 8.85358 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031041 B = 0.006015 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.821983 B = 4653.561490 C = 5091.802725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.609 5.609 4 C 0.227 3.773 5 C -0.531 4.531 6 H 0.026 0.974 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.240 1.240 13 C 0.499 3.501 14 O -0.574 6.574 15 C -0.116 4.116 16 C 0.143 3.857 17 H 0.060 0.940 18 N -0.845 5.845 19 C -0.190 4.190 20 C -0.170 4.170 21 C -0.177 4.177 22 H 0.043 0.957 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.043 0.957 28 H 0.013 0.987 29 H 0.267 0.733 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.343 0.657 33 H 0.340 0.660 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.903 -5.918 16.364 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.342 5.342 4 C 0.104 3.896 5 C -0.569 4.569 6 H 0.045 0.955 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.163 1.163 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.156 4.156 16 C 0.031 3.969 17 H 0.079 0.921 18 N -0.375 5.375 19 C -0.210 4.210 20 C -0.208 4.208 21 C -0.214 4.214 22 H 0.062 0.938 23 H 0.112 0.888 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.136 0.864 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.690 -5.013 15.461 20.620 hybrid contribution 0.409 0.217 0.071 0.469 sum -12.281 -4.796 15.532 20.373 Atomic orbital electron populations 1.22156 0.94099 1.03501 1.02011 1.21705 0.95512 0.81461 1.03563 1.48095 1.65103 1.15097 1.05866 1.19201 0.94527 0.92822 0.83000 1.21587 0.97130 1.31752 1.06455 0.95531 1.25858 0.96715 0.97243 0.99012 1.70061 1.17416 1.46795 1.24505 0.85709 0.80427 0.78962 0.77787 1.20341 1.19861 1.16292 1.21249 0.76863 0.86802 0.86315 1.90644 1.46269 1.20608 1.87793 1.21751 1.04785 0.99175 0.89933 1.20638 0.89248 0.96384 0.90614 0.92142 1.58762 1.04853 1.17428 1.56432 1.23187 1.05186 1.00098 0.92528 1.23037 0.91095 1.03302 1.03332 1.22967 0.99722 1.01524 0.97213 0.93773 0.88848 0.91849 0.91552 0.88738 0.93877 0.96868 0.92367 0.87973 0.86215 0.84340 0.84735 0.86446 0.89327 0.87180 0.87428 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 10.24 71.98 0.74 -2.84 16 2 C 0.10 3.00 5.93 86.38 0.51 3.51 16 3 N -0.61 -25.44 2.46 -826.14 -2.03 -27.47 16 4 C 0.23 11.56 4.23 85.63 0.36 11.92 16 5 C -0.53 -32.43 9.94 25.60 0.25 -32.18 16 6 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 7 C 0.01 0.56 5.47 84.66 0.46 1.03 16 8 N -0.95 -61.62 13.96 21.45 0.30 -61.32 16 9 Si 0.95 46.10 27.47 68.60 1.88 47.99 16 10 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.24 -10.51 6.54 99.48 0.65 -9.86 16 13 C 0.50 20.64 7.53 87.66 0.66 21.30 16 14 O -0.57 -29.83 14.93 -3.03 -0.05 -29.87 16 15 C -0.12 -3.17 3.88 29.85 0.12 -3.05 16 16 C 0.14 3.74 2.52 44.91 0.11 3.86 16 17 H 0.06 1.87 7.71 -2.39 -0.02 1.85 16 18 N -0.85 -24.87 8.35 -168.67 -1.41 -26.28 16 19 C -0.19 -3.37 5.33 -10.79 -0.06 -3.43 16 20 C -0.17 -2.65 10.18 30.62 0.31 -2.34 16 21 C -0.18 -2.80 9.87 30.62 0.30 -2.49 16 22 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.06 1.28 7.22 -2.39 -0.02 1.27 16 25 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 26 H 0.09 2.27 6.44 -2.39 -0.02 2.25 16 27 H 0.04 2.03 7.13 -2.38 -0.02 2.02 16 28 H 0.01 0.73 6.85 -2.38 -0.02 0.71 16 29 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 30 H 0.10 2.46 7.40 -2.39 -0.02 2.44 16 31 H 0.12 2.49 7.19 -2.39 -0.02 2.47 16 32 H 0.34 8.82 8.30 -89.69 -0.74 8.08 16 33 H 0.34 8.95 9.00 -89.70 -0.81 8.14 16 34 H 0.12 1.79 8.11 -2.39 -0.02 1.77 16 35 H 0.09 1.51 8.05 -2.39 -0.02 1.50 16 36 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 1.50 7.74 -2.39 -0.02 1.48 16 Total: -1.00 -79.76 311.19 1.92 -77.83 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.55 Total: 23.84 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 3.77 Total: -4.72 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -3.14 Total: -115.07 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.05 Total: -29.87 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.88 Total: 47.99 kcal Total: -79.76 1.92 -77.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129803212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.688 kcal (2) G-P(sol) polarization free energy of solvation -79.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds