Wall clock time and date at job start Mon Mar 30 2020 03:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.52995 * 109.47341 * 120.00263 * 2 1 3 5 5 N 1.46905 * 109.46932 * 295.00225 * 4 2 1 6 6 C 1.46901 * 110.99986 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47333 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99773 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00360 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00314 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47154 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00225 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99999 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99911 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00184 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47054 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47085 * 119.99398 * 15 13 11 18 18 H 1.48497 * 109.47415 * 239.99690 * 15 13 11 19 19 C 1.52996 * 109.47138 * 240.00475 * 2 1 3 20 20 C 1.53000 * 117.49997 * 179.97438 * 19 2 1 21 21 C 1.53002 * 60.02940 * 252.49592 * 20 19 2 22 22 H 1.09006 * 109.47356 * 299.99703 * 1 2 3 23 23 H 1.09001 * 109.47494 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47238 * 54.99814 * 4 2 1 26 26 H 1.08998 * 109.47246 * 175.00238 * 4 2 1 27 27 H 1.00899 * 110.99554 * 303.95161 * 5 4 2 28 28 H 1.09005 * 109.47132 * 299.99816 * 6 5 4 29 29 H 1.09002 * 109.47377 * 59.99667 * 6 5 4 30 30 H 0.97002 * 119.99782 * 359.97438 * 9 7 6 31 31 H 1.09005 * 109.46954 * 300.00018 * 10 9 7 32 32 H 1.09002 * 109.47114 * 59.99599 * 10 9 7 33 33 H 0.96998 * 120.00007 * 179.97438 * 14 13 11 34 34 H 1.09008 * 115.56055 * 325.68508 * 19 2 1 35 35 H 1.09002 * 117.49833 * 359.97438 * 20 19 2 36 36 H 1.09002 * 117.49953 * 144.99738 * 20 19 2 37 37 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 38 38 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6513 0.0374 2.4456 6 6 2.1258 -0.6266 3.6671 7 6 1.7098 0.1791 4.8708 8 8 1.0804 1.2057 4.7253 9 7 2.0379 -0.2405 6.1088 10 6 1.6340 0.5430 7.2789 11 6 2.1217 -0.1375 8.5319 12 1 2.6766 -1.0615 8.4635 13 6 1.8585 0.4189 9.7656 14 7 1.1823 1.5439 9.8489 15 14 2.4624 -0.4250 11.3189 16 1 3.1928 -1.6659 10.9559 17 1 3.3734 0.4874 12.0557 18 1 1.3017 -0.7670 12.1797 19 6 2.0399 -0.7211 -1.2493 20 6 3.5550 -0.8274 -1.4346 21 6 2.7419 0.1229 -2.3160 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6054 -1.7198 1.2951 26 1 3.1263 -0.7994 1.2055 27 1 1.9881 0.9872 2.3966 28 1 1.6921 -1.6247 3.7300 29 1 3.2127 -0.7038 3.6400 30 1 2.5416 -1.0613 6.2251 31 1 2.0680 1.5409 7.2154 32 1 0.5471 0.6207 7.3066 33 1 0.9968 1.9351 10.7169 34 1 1.4309 -1.5583 -1.5906 35 1 4.1883 -0.3832 -0.6668 36 1 3.9430 -1.7349 -1.8974 37 1 2.8404 1.1920 -2.1278 38 1 2.5947 -0.1595 -3.3584 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132833043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:47 Heat of formation + Delta-G solvation = -53.191994 kcal Electronic energy + Delta-G solvation = -16582.123588 eV Core-core repulsion = 13844.595752 eV Total energy + Delta-G solvation = -2737.527836 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53202 -39.24487 -36.61797 -36.00005 -34.34064 -33.02620 -29.91441 -27.98590 -25.82266 -24.30435 -23.39966 -22.81410 -21.46845 -20.73745 -18.94275 -17.56514 -17.19837 -16.92709 -16.56059 -16.15039 -15.84191 -15.54312 -15.06301 -14.57463 -14.31337 -14.13620 -13.89542 -13.42749 -13.12755 -13.09350 -12.88574 -12.74467 -12.41581 -12.25905 -12.21894 -12.02044 -11.63328 -11.45742 -11.02353 -10.87245 -10.81630 -10.62771 -9.82015 -9.33018 -8.29400 -6.46058 1.43257 1.44489 1.57996 1.79947 2.29502 2.50048 2.92504 3.05523 3.34827 3.77000 3.97750 4.00277 4.09556 4.24493 4.32558 4.41236 4.51331 4.52948 4.63882 4.81664 4.84712 4.98340 5.05601 5.11272 5.19734 5.24344 5.24434 5.29873 5.41623 5.49393 5.56239 5.69255 5.85105 6.00540 6.34432 6.65741 6.95093 7.23663 7.52945 8.83145 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.062624 B = 0.003341 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.003726 B = 8377.811713 C = 8614.306765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.055 4.055 3 H 0.061 0.939 4 C 0.070 3.930 5 N -0.688 5.688 6 C 0.058 3.942 7 C 0.491 3.509 8 O -0.593 6.593 9 N -0.709 5.709 10 C 0.267 3.733 11 C -0.555 4.555 12 H 0.085 0.915 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.986 3.014 16 H -0.252 1.252 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.149 4.149 20 C -0.180 4.180 21 C -0.181 4.181 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.343 0.657 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.409 0.591 31 H -0.014 1.014 32 H -0.015 1.015 33 H 0.269 0.731 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.564 -8.790 -20.894 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.074 4.074 3 H 0.080 0.920 4 C -0.058 4.058 5 N -0.321 5.321 6 C -0.074 4.074 7 C 0.279 3.721 8 O -0.474 6.474 9 N -0.360 5.360 10 C 0.144 3.856 11 C -0.592 4.592 12 H 0.103 0.897 13 C -0.198 4.198 14 N -0.571 5.571 15 Si 0.809 3.191 16 H -0.175 1.175 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.167 4.167 20 C -0.217 4.217 21 C -0.218 4.218 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.161 0.839 28 H 0.138 0.862 29 H 0.101 0.899 30 H 0.244 0.756 31 H 0.004 0.996 32 H 0.003 0.997 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.426 -8.227 -20.832 22.831 hybrid contribution 1.024 0.136 1.052 1.474 sum 5.450 -8.091 -19.780 22.055 Atomic orbital electron populations 1.21651 0.94516 1.01776 1.01139 1.20641 0.96364 0.98285 0.92098 0.92013 1.22050 0.98141 0.97688 0.87927 1.60113 1.65015 1.06083 1.00855 1.21743 1.00298 0.98361 0.87046 1.21483 0.79146 0.85934 0.85584 1.90640 1.42249 1.27598 1.86896 1.46182 1.56299 1.27739 1.05772 1.18519 0.93287 0.90611 0.83232 1.21661 1.36836 1.09906 0.90843 0.89727 1.26098 0.94738 0.95466 1.03480 1.70152 1.40270 1.20346 1.26305 0.85092 0.77992 0.78691 0.77315 1.17537 1.20464 1.20485 1.22311 0.95151 1.02190 0.97090 1.23002 0.93540 1.02107 1.03072 1.23080 1.04466 0.97521 0.96697 0.93453 0.92680 0.92550 0.90284 0.94030 0.83911 0.86223 0.89902 0.75569 0.99576 0.99700 0.92260 0.87134 0.89147 0.87869 0.89175 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.06 71.98 0.65 -2.01 16 2 C -0.06 -1.00 2.68 -10.80 -0.03 -1.03 16 3 H 0.06 1.21 7.90 -2.39 -0.02 1.19 16 4 C 0.07 1.35 4.99 86.30 0.43 1.78 16 5 N -0.69 -18.16 5.58 -517.92 -2.89 -21.05 16 6 C 0.06 1.52 6.17 85.56 0.53 2.05 16 7 C 0.49 19.73 7.87 87.66 0.69 20.42 16 8 O -0.59 -29.91 16.20 -3.06 -0.05 -29.96 16 9 N -0.71 -30.00 5.55 -466.79 -2.59 -32.59 16 10 C 0.27 14.82 5.43 85.63 0.46 15.28 16 11 C -0.55 -30.33 9.28 25.60 0.24 -30.09 16 12 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 13 C 0.00 0.09 5.46 84.65 0.46 0.55 16 14 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 15 Si 0.99 42.42 29.54 68.60 2.03 44.45 16 16 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 19 C -0.15 -2.17 5.15 -10.77 -0.06 -2.22 16 20 C -0.18 -2.37 9.67 30.60 0.30 -2.07 16 21 C -0.18 -2.42 10.18 30.62 0.31 -2.10 16 22 H 0.05 1.19 7.75 -2.38 -0.02 1.17 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 26 H 0.04 0.71 7.13 -2.39 -0.02 0.69 16 27 H 0.34 9.78 8.43 -89.69 -0.76 9.03 16 28 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.41 14.03 8.32 -92.71 -0.77 13.26 16 31 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 32 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.11 1.49 8.11 -2.38 -0.02 1.47 16 35 H 0.09 1.25 7.59 -2.39 -0.02 1.23 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -70.78 319.88 0.28 -70.50 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -0.49 Total: 24.58 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 3.99 Total: 0.54 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -5.20 Total: -110.11 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.05 Total: -29.96 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -70.78 0.28 -70.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132833043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.306 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds