Wall clock time and date at job start Mon Mar 30 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 C 1.52992 * 109.47385 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47402 * 180.02562 * 16 15 13 18 18 H 1.09003 * 110.27642 * 305.70560 * 17 16 15 19 19 C 1.54603 * 110.31288 * 183.60952 * 17 16 15 20 20 C 1.55094 * 102.84707 * 219.18852 * 19 17 16 21 21 N 1.48532 * 103.28789 * 37.30652 * 20 19 17 22 22 C 1.47903 * 105.81801 * 320.84613 * 21 20 19 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 27 27 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 28 28 H 1.08997 * 109.47364 * 300.00354 * 15 13 12 29 29 H 1.09001 * 109.46822 * 60.00123 * 15 13 12 30 30 H 1.09007 * 109.47184 * 300.00285 * 16 15 13 31 31 H 1.09001 * 109.47135 * 60.00198 * 16 15 13 32 32 H 1.08998 * 110.72211 * 337.48968 * 19 17 16 33 33 H 1.08996 * 110.71948 * 100.76563 * 19 17 16 34 34 H 1.09008 * 110.59256 * 278.87468 * 20 19 17 35 35 H 1.08997 * 110.68760 * 155.78762 * 20 19 17 36 36 H 1.00896 * 111.00329 * 81.35819 * 21 20 19 37 37 H 1.09002 * 109.91969 * 265.97518 * 22 21 20 38 38 H 1.09002 * 110.08073 * 144.77805 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2547 -4.7588 17 6 3.2098 -0.4667 -6.0083 18 1 4.1642 -0.9514 -5.8024 19 6 3.3562 0.5299 -7.1812 20 6 2.8626 -0.2951 -8.3983 21 7 1.7417 -1.0926 -7.8382 22 6 2.1758 -1.5034 -6.4853 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7096 1.1617 3.4844 27 1 2.2491 -1.6316 -1.1527 28 1 3.6479 -1.1211 -3.3988 29 1 1.9759 -1.5504 -3.8327 30 1 1.7020 0.6477 -4.9480 31 1 3.3741 1.0762 -4.5137 32 1 2.7237 1.4039 -7.0259 33 1 4.3978 0.8241 -7.3095 34 1 3.6542 -0.9487 -8.7649 35 1 2.5078 0.3632 -9.1913 36 1 0.8948 -0.5459 -7.7957 37 1 2.6329 -2.4921 -6.5263 38 1 1.3230 -1.5168 -5.8066 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134553709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:59 Heat of formation + Delta-G solvation = -59.839842 kcal Electronic energy + Delta-G solvation = -17149.025385 eV Core-core repulsion = 14411.209277 eV Total energy + Delta-G solvation = -2737.816108 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35430 -38.45661 -34.86988 -33.37177 -32.34014 -29.87792 -29.11292 -27.76289 -25.26089 -23.87154 -21.92562 -20.82392 -19.79310 -19.30987 -17.20050 -16.56160 -15.92778 -15.52485 -15.18815 -14.75781 -14.16525 -14.03773 -13.41736 -13.13868 -12.95152 -12.42091 -12.18881 -12.01580 -11.70009 -11.55891 -11.31578 -11.14894 -10.96197 -10.89076 -10.75947 -10.65197 -10.54594 -10.29558 -10.24221 -9.04274 -8.95677 -8.80785 -8.55159 -7.88409 -6.12577 -4.21814 3.23148 3.30839 3.33586 3.44685 4.04221 4.12302 4.36895 4.53866 4.65308 4.89354 5.12965 5.17518 5.19908 5.31048 5.35224 5.38128 5.58401 5.67129 5.72380 5.77779 5.82488 5.99708 6.05107 6.25647 6.36921 6.57515 6.82881 6.97066 7.14084 7.16066 7.48396 7.57670 7.70273 7.92355 8.15555 8.69730 8.79167 9.16936 9.46234 10.93484 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058256 B = 0.003997 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.524369 B = 7003.055776 C = 7101.898044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.711 5.711 13 C 0.498 3.502 14 O -0.559 6.559 15 C -0.143 4.143 16 C -0.092 4.092 17 C -0.120 4.120 18 H 0.077 0.923 19 C -0.154 4.154 20 C 0.041 3.959 21 N -0.678 5.678 22 C 0.042 3.958 23 H 0.090 0.910 24 H 0.026 0.974 25 H 0.014 0.986 26 H 0.264 0.736 27 H 0.388 0.612 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.337 0.663 37 H 0.074 0.926 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -4.376 -16.535 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.359 5.359 13 C 0.283 3.717 14 O -0.439 6.439 15 C -0.183 4.183 16 C -0.130 4.130 17 C -0.140 4.140 18 H 0.095 0.905 19 C -0.193 4.193 20 C -0.088 4.088 21 N -0.304 5.304 22 C -0.088 4.088 23 H 0.108 0.892 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.152 0.848 37 H 0.093 0.907 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.510 -4.061 -16.749 17.588 hybrid contribution 0.390 -0.072 1.543 1.593 sum 3.900 -4.133 -15.206 16.233 Atomic orbital electron populations 1.22069 0.98542 0.99041 1.00835 1.18731 0.91002 0.93991 0.80222 0.93481 1.21271 1.32325 1.13176 0.90377 0.92046 1.24903 0.94828 0.94968 0.99096 1.69915 1.35978 1.22489 1.23748 0.86391 0.78606 0.79524 0.82566 1.19734 1.20870 1.20864 1.46551 1.65115 1.13522 1.10702 1.20526 0.78633 0.87589 0.84947 1.90645 1.51583 1.16306 1.85352 1.21732 1.02698 0.99673 0.94230 1.21355 1.02227 0.97494 0.91917 1.22494 0.99843 0.96349 0.95307 0.90451 1.23213 1.02214 0.98679 0.95234 1.23135 0.94283 0.94957 0.96455 1.62727 1.05647 1.42015 1.20041 1.22892 0.98061 0.98525 0.89279 0.89194 0.95517 0.96734 0.92643 0.77972 0.89570 0.89598 0.91435 0.91180 0.91149 0.90923 0.90384 0.90951 0.84771 0.90716 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.78 2.56 -69.08 -0.18 6.60 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.26 8.73 -34.44 -0.30 -14.57 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.12 11.32 55.43 0.63 -24.49 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.71 -14.89 5.07 -54.93 -0.28 -15.17 16 13 C 0.50 9.85 7.79 -10.99 -0.09 9.76 16 14 O -0.56 -13.43 15.65 5.55 0.09 -13.34 16 15 C -0.14 -1.95 5.53 -27.89 -0.15 -2.11 16 16 C -0.09 -1.18 3.67 -26.74 -0.10 -1.28 16 17 C -0.12 -1.21 3.01 -89.26 -0.27 -1.48 16 18 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 19 C -0.15 -1.41 6.62 -24.78 -0.16 -1.57 16 20 C 0.04 0.35 7.55 -1.81 -0.01 0.34 16 21 N -0.68 -6.58 7.51 -109.99 -0.83 -7.41 16 22 C 0.04 0.42 6.73 -2.75 -0.02 0.40 16 23 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.39 6.98 8.54 -40.82 -0.35 6.63 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.01 6.97 -51.93 -0.36 0.65 16 30 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 32 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.34 3.02 8.92 -39.29 -0.35 2.67 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.72 6.81 -51.93 -0.35 0.37 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -30.80 307.30 -8.11 -38.91 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.30 Total: 6.76 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.03 Total: -5.59 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.48 Total: -47.07 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.80 -8.11 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134553709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.929 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds