Wall clock time and date at job start Mon Mar 30 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 C 1.52992 * 109.47385 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47402 * 180.02562 * 16 15 13 18 18 H 1.09003 * 110.27642 * 305.70560 * 17 16 15 19 19 C 1.54603 * 110.31288 * 183.60952 * 17 16 15 20 20 C 1.55094 * 102.84707 * 219.18852 * 19 17 16 21 21 N 1.48532 * 103.28789 * 37.30652 * 20 19 17 22 22 C 1.47903 * 105.81801 * 320.84613 * 21 20 19 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 27 27 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 28 28 H 1.08997 * 109.47364 * 300.00354 * 15 13 12 29 29 H 1.09001 * 109.46822 * 60.00123 * 15 13 12 30 30 H 1.09007 * 109.47184 * 300.00285 * 16 15 13 31 31 H 1.09001 * 109.47135 * 60.00198 * 16 15 13 32 32 H 1.08998 * 110.72211 * 337.48968 * 19 17 16 33 33 H 1.08996 * 110.71948 * 100.76563 * 19 17 16 34 34 H 1.09008 * 110.59256 * 278.87468 * 20 19 17 35 35 H 1.08997 * 110.68760 * 155.78762 * 20 19 17 36 36 H 1.00896 * 111.00329 * 81.35819 * 21 20 19 37 37 H 1.09002 * 109.91969 * 265.97518 * 22 21 20 38 38 H 1.09002 * 110.08073 * 144.77805 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2547 -4.7588 17 6 3.2098 -0.4667 -6.0083 18 1 4.1642 -0.9514 -5.8024 19 6 3.3562 0.5299 -7.1812 20 6 2.8626 -0.2951 -8.3983 21 7 1.7417 -1.0926 -7.8382 22 6 2.1758 -1.5034 -6.4853 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7096 1.1617 3.4844 27 1 2.2491 -1.6316 -1.1527 28 1 3.6479 -1.1211 -3.3988 29 1 1.9759 -1.5504 -3.8327 30 1 1.7020 0.6477 -4.9480 31 1 3.3741 1.0762 -4.5137 32 1 2.7237 1.4039 -7.0259 33 1 4.3978 0.8241 -7.3095 34 1 3.6542 -0.9487 -8.7649 35 1 2.5078 0.3632 -9.1913 36 1 0.8948 -0.5459 -7.7957 37 1 2.6329 -2.4921 -6.5263 38 1 1.3230 -1.5168 -5.8066 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134553709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:59 Heat of formation + Delta-G solvation = -82.417533 kcal Electronic energy + Delta-G solvation = -17150.004427 eV Core-core repulsion = 14411.209277 eV Total energy + Delta-G solvation = -2738.795151 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.71430 -39.55623 -36.76460 -34.50986 -34.25349 -31.25501 -30.28073 -28.88027 -27.35879 -25.03963 -23.00475 -22.26676 -21.06964 -20.63398 -18.87564 -17.70075 -17.16225 -17.13358 -16.71704 -16.09135 -15.82673 -14.81404 -14.79409 -14.50223 -14.26254 -14.18653 -13.66398 -13.10932 -13.02190 -12.94714 -12.80402 -12.75753 -12.45378 -12.29262 -12.13039 -12.09035 -11.78761 -11.62486 -11.41898 -11.10688 -10.70694 -10.55997 -9.73568 -9.54223 -8.18906 -6.36743 1.43820 1.44557 1.56941 1.86325 2.35628 2.67612 3.11523 3.36310 3.70630 3.78300 3.97870 4.13568 4.25944 4.38108 4.46234 4.58025 4.67817 4.73459 4.78283 4.81614 4.90362 4.99159 5.03111 5.08356 5.13396 5.20027 5.30042 5.40831 5.43387 5.61488 5.68641 5.85469 5.90571 6.09212 6.43836 6.72243 6.99577 7.31804 7.59958 8.87738 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058256 B = 0.003997 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.524369 B = 7003.055776 C = 7101.898044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.267 3.733 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.258 1.258 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.708 5.708 13 C 0.491 3.509 14 O -0.608 6.608 15 C -0.128 4.128 16 C -0.086 4.086 17 C -0.112 4.112 18 H 0.090 0.910 19 C -0.154 4.154 20 C 0.044 3.956 21 N -0.687 5.687 22 C 0.043 3.957 23 H 0.065 0.935 24 H 0.041 0.959 25 H 0.010 0.990 26 H 0.265 0.735 27 H 0.406 0.594 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.339 0.661 37 H 0.082 0.918 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.782 -6.622 -17.306 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.163 3.837 3 H 0.013 0.987 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.357 5.357 13 C 0.279 3.721 14 O -0.490 6.490 15 C -0.167 4.167 16 C -0.124 4.124 17 C -0.132 4.132 18 H 0.108 0.892 19 C -0.193 4.193 20 C -0.085 4.085 21 N -0.314 5.314 22 C -0.087 4.087 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.241 0.759 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.155 0.845 37 H 0.101 0.899 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.623 -6.347 -17.552 19.228 hybrid contribution 0.033 0.688 1.737 1.868 sum 4.656 -5.660 -15.815 17.431 Atomic orbital electron populations 1.21889 0.98407 0.99440 0.99428 1.18333 0.91101 0.91868 0.82359 0.98724 1.21598 1.32507 1.13538 0.90811 0.90748 1.25846 0.94874 0.95601 1.02474 1.70067 1.37113 1.24020 1.24556 0.85261 0.78096 0.78516 0.78245 1.18220 1.20978 1.20410 1.46331 1.65222 1.14281 1.09858 1.21634 0.77246 0.87168 0.86032 1.90625 1.53457 1.18796 1.86164 1.21737 1.04421 0.99732 0.90826 1.21282 1.00918 0.97114 0.93088 1.22427 1.00335 0.96404 0.93988 0.89160 1.23209 1.02650 0.98225 0.95230 1.23170 0.94066 0.94956 0.96328 1.62753 1.06181 1.42487 1.19962 1.22894 0.97787 0.98682 0.89329 0.91607 0.93993 0.97090 0.92562 0.75906 0.86791 0.86739 0.93248 0.93107 0.92194 0.89995 0.89795 0.89848 0.84542 0.89918 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 9.26 71.98 0.67 -6.19 16 2 C 0.27 14.07 2.56 44.24 0.11 14.19 16 3 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 4 C -0.55 -29.11 8.73 25.60 0.22 -28.89 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.27 11.32 21.45 0.24 -53.03 16 8 Si 0.97 42.04 29.54 68.60 2.03 44.06 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 N -0.71 -29.29 5.07 -446.09 -2.26 -31.56 16 13 C 0.49 19.31 7.79 87.66 0.68 19.99 16 14 O -0.61 -30.11 15.65 -3.05 -0.05 -30.16 16 15 C -0.13 -3.21 5.53 29.84 0.17 -3.04 16 16 C -0.09 -2.12 3.67 30.59 0.11 -2.01 16 17 C -0.11 -2.00 3.01 -9.91 -0.03 -2.03 16 18 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 19 C -0.15 -2.54 6.62 31.86 0.21 -2.33 16 20 C 0.04 0.65 7.55 86.70 0.65 1.31 16 21 N -0.69 -11.95 7.51 -501.89 -3.77 -15.72 16 22 C 0.04 0.74 6.73 86.45 0.58 1.32 16 23 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 24 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.41 13.83 8.54 -92.71 -0.79 13.04 16 28 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.11 2.30 6.97 -2.39 -0.02 2.29 16 30 H 0.05 1.39 8.10 -2.38 -0.02 1.37 16 31 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 32 H 0.06 1.12 7.86 -2.39 -0.02 1.10 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.34 5.58 8.92 -89.70 -0.80 4.78 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.21 6.81 -2.39 -0.02 1.19 16 Total: -1.00 -68.05 307.30 -0.52 -68.58 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -0.54 Total: 24.42 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 3.83 Total: -6.59 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -5.79 Total: -100.31 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -68.05 -0.52 -68.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134553709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.841 kcal (2) G-P(sol) polarization free energy of solvation -68.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds