Wall clock time and date at job start Mon Mar 30 2020 03:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46640 * 2 1 4 4 C 1.50701 * 109.46921 * 240.00046 * 2 1 3 5 5 H 1.08002 * 120.00258 * 274.99625 * 4 2 1 6 6 C 1.37884 * 120.00120 * 95.00144 * 4 2 1 7 7 N 1.31505 * 119.99965 * 184.91245 * 6 4 2 8 8 Si 1.86802 * 119.99826 * 4.91268 * 6 4 2 9 9 H 1.48504 * 109.46936 * 84.83366 * 8 6 4 10 10 H 1.48499 * 109.46887 * 204.83265 * 8 6 4 11 11 H 1.48496 * 109.47224 * 324.83342 * 8 6 4 12 12 N 1.46494 * 109.47363 * 119.99762 * 2 1 3 13 13 C 1.34775 * 120.00474 * 275.00142 * 12 2 1 14 14 O 1.21285 * 119.99515 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00472 * 179.97438 * 13 12 2 16 16 C 1.52991 * 109.47386 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47411 * 180.02562 * 16 15 13 18 18 H 1.08996 * 110.26868 * 305.69690 * 17 16 15 19 19 C 1.54601 * 110.31060 * 183.60920 * 17 16 15 20 20 C 1.55100 * 102.84566 * 219.18333 * 19 17 16 21 21 N 1.48532 * 103.28338 * 37.30399 * 20 19 17 22 22 C 1.47903 * 105.82388 * 320.84793 * 21 20 19 23 23 H 1.09006 * 109.46962 * 175.03937 * 1 2 3 24 24 H 1.08996 * 109.47356 * 295.03097 * 1 2 3 25 25 H 1.08998 * 109.47235 * 55.04312 * 1 2 3 26 26 H 0.96999 * 120.00415 * 179.97438 * 7 6 4 27 27 H 0.97007 * 119.99983 * 95.27136 * 12 2 1 28 28 H 1.09006 * 109.46996 * 300.00288 * 15 13 12 29 29 H 1.08997 * 109.46897 * 59.99696 * 15 13 12 30 30 H 1.09006 * 109.46992 * 299.99928 * 16 15 13 31 31 H 1.08997 * 109.47647 * 59.99792 * 16 15 13 32 32 H 1.09001 * 110.71959 * 337.48462 * 19 17 16 33 33 H 1.08997 * 110.72180 * 100.76565 * 19 17 16 34 34 H 1.09003 * 110.59178 * 278.87682 * 20 19 17 35 35 H 1.08998 * 110.68691 * 155.78000 * 20 19 17 36 36 H 1.00907 * 111.00283 * 81.36171 * 21 20 19 37 37 H 1.08996 * 109.91734 * 265.97892 * 22 21 20 38 38 H 1.09000 * 110.08133 * 144.77428 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3581 7 7 2.7059 -0.6131 -3.4622 8 14 2.3135 1.8791 -2.3175 9 1 3.5991 2.3949 -1.7822 10 1 2.1057 2.3991 -3.6929 11 1 1.1986 2.3275 -1.4451 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6490 -0.7287 3.5877 16 6 2.7000 0.2542 4.7590 17 6 3.2101 -0.4669 6.0082 18 1 2.6054 -1.3518 6.2068 19 6 3.1838 0.4853 7.2259 20 6 4.4926 0.1230 7.9752 21 7 5.4545 -0.1398 6.8744 22 6 4.6890 -0.8586 5.8329 23 1 -0.3633 -1.0239 -0.0889 24 1 -0.3634 0.4348 0.9311 25 1 -0.3633 0.5888 -0.8422 26 1 2.9363 -0.1049 -4.2556 27 1 2.2529 -1.6308 1.1516 28 1 1.9761 -1.5506 3.8325 29 1 3.6480 -1.1212 3.3985 30 1 3.3727 1.0763 4.5143 31 1 1.7007 0.6464 4.9480 32 1 3.2004 1.5260 6.9020 33 1 2.3127 0.2885 7.8507 34 1 4.3512 -0.7701 8.5839 35 1 4.8290 0.9587 8.5887 36 1 5.8352 0.7221 6.5133 37 1 4.8060 -1.9345 5.9621 38 1 5.0364 -0.5637 4.8426 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134553731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:02 Heat of formation + Delta-G solvation = -60.087525 kcal Electronic energy + Delta-G solvation = -17232.178052 eV Core-core repulsion = 14494.351203 eV Total energy + Delta-G solvation = -2737.826849 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43357 -38.55522 -34.97512 -33.43211 -32.34340 -30.21629 -29.47146 -27.97162 -25.32544 -23.92588 -21.94048 -20.71427 -19.80283 -19.49870 -17.43354 -16.69638 -16.04731 -15.66733 -15.37718 -14.84548 -14.07947 -14.00740 -13.49389 -13.21784 -13.01116 -12.52982 -12.41976 -12.23854 -11.99296 -11.70151 -11.42238 -11.32394 -11.13389 -10.94520 -10.80272 -10.76219 -10.58802 -10.56583 -9.88809 -9.20921 -9.10121 -8.81941 -8.70741 -8.07128 -6.24426 -4.28043 3.24645 3.32214 3.33374 3.40530 3.97632 4.07743 4.31692 4.50242 4.60177 4.85339 5.08003 5.11004 5.17162 5.27681 5.31037 5.35314 5.53959 5.64559 5.68210 5.73711 5.79178 5.94792 6.00839 6.20783 6.31670 6.34251 6.52048 6.55943 6.67917 6.94049 7.12945 7.19189 7.38247 7.56927 8.14153 8.58864 8.76347 9.01586 9.37980 10.87394 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040788 B = 0.004556 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.317084 B = 6144.798096 C = 6219.827015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.230 3.770 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.706 5.706 13 C 0.498 3.502 14 O -0.563 6.563 15 C -0.143 4.143 16 C -0.092 4.092 17 C -0.120 4.120 18 H 0.077 0.923 19 C -0.154 4.154 20 C 0.041 3.959 21 N -0.678 5.678 22 C 0.042 3.958 23 H 0.046 0.954 24 H 0.028 0.972 25 H 0.051 0.949 26 H 0.268 0.732 27 H 0.393 0.607 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.337 0.663 37 H 0.075 0.925 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 -0.444 18.851 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.127 3.873 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.354 5.354 13 C 0.283 3.717 14 O -0.444 6.444 15 C -0.183 4.183 16 C -0.130 4.130 17 C -0.140 4.140 18 H 0.096 0.904 19 C -0.193 4.193 20 C -0.088 4.088 21 N -0.304 5.304 22 C -0.088 4.088 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.226 0.774 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.153 0.847 37 H 0.093 0.907 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.802 -0.181 18.943 19.029 hybrid contribution -0.522 1.122 -0.644 1.395 sum 1.280 0.941 18.299 18.368 Atomic orbital electron populations 1.22211 0.98692 1.00505 0.99162 1.19108 0.90875 0.94328 0.82977 0.93331 1.21026 1.45225 0.95625 0.95017 0.90356 1.24945 0.93622 0.98638 0.95151 1.69878 1.44806 1.36199 1.01686 0.86884 0.79768 0.85858 0.77322 1.19883 1.21162 1.18540 1.46657 1.64810 1.13949 1.09985 1.20635 0.78400 0.87579 0.85043 1.90633 1.51860 1.16380 1.85484 1.21735 1.02895 0.99690 0.94028 1.21362 1.02374 0.97381 0.91914 1.22490 0.97647 0.98758 0.95077 0.90440 1.23215 0.99323 0.99900 0.96898 1.23136 0.90220 1.00930 0.94539 1.62722 1.32283 1.26119 1.09284 1.22898 0.90988 0.99698 0.95224 0.93456 0.95307 0.92983 0.92235 0.77374 0.89469 0.89299 0.91405 0.91249 0.91189 0.90944 0.90368 0.90952 0.84749 0.90654 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.47 37.16 0.35 -2.91 16 2 C 0.23 5.52 2.22 -69.08 -0.15 5.36 16 3 H 0.05 1.28 4.73 -51.93 -0.25 1.03 16 4 C -0.53 -14.34 9.05 -34.44 -0.31 -14.65 16 5 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 8 Si 0.87 21.73 26.99 -169.99 -4.59 17.14 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.26 -6.41 6.82 56.52 0.39 -6.03 16 12 N -0.71 -14.15 5.07 -54.94 -0.28 -14.43 16 13 C 0.50 9.39 7.79 -10.99 -0.09 9.30 16 14 O -0.56 -12.80 15.65 5.55 0.09 -12.72 16 15 C -0.14 -1.88 5.53 -27.89 -0.15 -2.03 16 16 C -0.09 -1.14 3.67 -26.74 -0.10 -1.24 16 17 C -0.12 -1.17 3.01 -89.26 -0.27 -1.43 16 18 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 19 C -0.15 -1.36 6.62 -24.78 -0.16 -1.53 16 20 C 0.04 0.35 7.55 -1.81 -0.01 0.33 16 21 N -0.68 -6.57 7.51 -109.99 -0.83 -7.40 16 22 C 0.04 0.41 6.73 -2.75 -0.02 0.39 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.39 6.89 8.59 -40.82 -0.35 6.54 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.03 6.97 -51.93 -0.36 0.67 16 30 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 31 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.07 0.66 7.86 -51.93 -0.41 0.25 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.34 3.03 8.92 -39.29 -0.35 2.68 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.73 6.81 -51.93 -0.35 0.38 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -31.36 307.05 -7.51 -38.87 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.29 Total: 5.60 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.01 Total: -6.23 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.33 Total: -47.29 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.59 Total: 17.14 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.36 -7.51 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134553731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.218 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds