Wall clock time and date at job start Mon Mar 30 2020 03:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46640 * 2 1 4 4 C 1.50701 * 109.46921 * 240.00046 * 2 1 3 5 5 H 1.08002 * 120.00258 * 274.99625 * 4 2 1 6 6 C 1.37884 * 120.00120 * 95.00144 * 4 2 1 7 7 N 1.31505 * 119.99965 * 184.91245 * 6 4 2 8 8 Si 1.86802 * 119.99826 * 4.91268 * 6 4 2 9 9 H 1.48504 * 109.46936 * 84.83366 * 8 6 4 10 10 H 1.48499 * 109.46887 * 204.83265 * 8 6 4 11 11 H 1.48496 * 109.47224 * 324.83342 * 8 6 4 12 12 N 1.46494 * 109.47363 * 119.99762 * 2 1 3 13 13 C 1.34775 * 120.00474 * 275.00142 * 12 2 1 14 14 O 1.21285 * 119.99515 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00472 * 179.97438 * 13 12 2 16 16 C 1.52991 * 109.47386 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47411 * 180.02562 * 16 15 13 18 18 H 1.08996 * 110.26868 * 305.69690 * 17 16 15 19 19 C 1.54601 * 110.31060 * 183.60920 * 17 16 15 20 20 C 1.55100 * 102.84566 * 219.18333 * 19 17 16 21 21 N 1.48532 * 103.28338 * 37.30399 * 20 19 17 22 22 C 1.47903 * 105.82388 * 320.84793 * 21 20 19 23 23 H 1.09006 * 109.46962 * 175.03937 * 1 2 3 24 24 H 1.08996 * 109.47356 * 295.03097 * 1 2 3 25 25 H 1.08998 * 109.47235 * 55.04312 * 1 2 3 26 26 H 0.96999 * 120.00415 * 179.97438 * 7 6 4 27 27 H 0.97007 * 119.99983 * 95.27136 * 12 2 1 28 28 H 1.09006 * 109.46996 * 300.00288 * 15 13 12 29 29 H 1.08997 * 109.46897 * 59.99696 * 15 13 12 30 30 H 1.09006 * 109.46992 * 299.99928 * 16 15 13 31 31 H 1.08997 * 109.47647 * 59.99792 * 16 15 13 32 32 H 1.09001 * 110.71959 * 337.48462 * 19 17 16 33 33 H 1.08997 * 110.72180 * 100.76565 * 19 17 16 34 34 H 1.09003 * 110.59178 * 278.87682 * 20 19 17 35 35 H 1.08998 * 110.68691 * 155.78000 * 20 19 17 36 36 H 1.00907 * 111.00283 * 81.36171 * 21 20 19 37 37 H 1.08996 * 109.91734 * 265.97892 * 22 21 20 38 38 H 1.09000 * 110.08133 * 144.77428 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3581 7 7 2.7059 -0.6131 -3.4622 8 14 2.3135 1.8791 -2.3175 9 1 3.5991 2.3949 -1.7822 10 1 2.1057 2.3991 -3.6929 11 1 1.1986 2.3275 -1.4451 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6490 -0.7287 3.5877 16 6 2.7000 0.2542 4.7590 17 6 3.2101 -0.4669 6.0082 18 1 2.6054 -1.3518 6.2068 19 6 3.1838 0.4853 7.2259 20 6 4.4926 0.1230 7.9752 21 7 5.4545 -0.1398 6.8744 22 6 4.6890 -0.8586 5.8329 23 1 -0.3633 -1.0239 -0.0889 24 1 -0.3634 0.4348 0.9311 25 1 -0.3633 0.5888 -0.8422 26 1 2.9363 -0.1049 -4.2556 27 1 2.2529 -1.6308 1.1516 28 1 1.9761 -1.5506 3.8325 29 1 3.6480 -1.1212 3.3985 30 1 3.3727 1.0763 4.5143 31 1 1.7007 0.6464 4.9480 32 1 3.2004 1.5260 6.9020 33 1 2.3127 0.2885 7.8507 34 1 4.3512 -0.7701 8.5839 35 1 4.8290 0.9587 8.5887 36 1 5.8352 0.7221 6.5133 37 1 4.8060 -1.9345 5.9621 38 1 5.0364 -0.5637 4.8426 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134553731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:02 Heat of formation + Delta-G solvation = -83.521267 kcal Electronic energy + Delta-G solvation = -17233.194215 eV Core-core repulsion = 14494.351203 eV Total energy + Delta-G solvation = -2738.843012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75861 -39.57274 -36.76784 -34.51026 -34.34417 -31.78868 -30.36386 -28.94812 -27.35075 -25.02925 -22.89661 -22.14977 -21.17498 -20.63563 -19.24249 -17.83364 -17.40763 -17.03926 -16.71447 -16.05070 -15.84664 -14.88190 -14.77282 -14.58740 -14.47187 -14.18009 -14.10992 -13.29627 -13.09831 -13.05969 -12.86111 -12.81524 -12.49882 -12.42567 -12.09378 -11.89863 -11.79486 -11.62194 -11.42121 -11.24839 -10.88020 -10.65603 -9.79255 -9.54342 -8.40891 -6.46903 1.27021 1.31537 1.42159 1.82452 2.25023 2.51064 3.02473 3.35890 3.70668 3.77592 3.96163 4.13515 4.25515 4.36865 4.44930 4.46325 4.58352 4.68029 4.73187 4.76101 4.81578 4.83194 4.99295 5.02791 5.08731 5.13901 5.19760 5.29910 5.36127 5.41707 5.43778 5.76788 5.85534 6.11717 6.43088 6.58272 6.93834 7.19670 7.50879 8.74186 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040788 B = 0.004556 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.317084 B = 6144.798096 C = 6219.827015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.231 3.769 3 H 0.027 0.973 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.033 3.967 7 N -0.929 5.929 8 Si 0.927 3.073 9 H -0.275 1.275 10 H -0.276 1.276 11 H -0.259 1.259 12 N -0.707 5.707 13 C 0.494 3.506 14 O -0.604 6.604 15 C -0.131 4.131 16 C -0.086 4.086 17 C -0.111 4.111 18 H 0.091 0.909 19 C -0.153 4.153 20 C 0.043 3.957 21 N -0.688 5.688 22 C 0.041 3.959 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.045 0.955 26 H 0.271 0.729 27 H 0.406 0.594 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.339 0.661 37 H 0.081 0.919 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -0.726 20.728 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.127 3.873 3 H 0.045 0.955 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.167 4.167 7 N -0.568 5.568 8 Si 0.752 3.248 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.183 1.183 12 N -0.356 5.356 13 C 0.282 3.718 14 O -0.487 6.487 15 C -0.170 4.170 16 C -0.124 4.124 17 C -0.131 4.131 18 H 0.109 0.891 19 C -0.192 4.192 20 C -0.086 4.086 21 N -0.315 5.315 22 C -0.088 4.088 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.242 0.758 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.715 -0.486 20.843 20.919 hybrid contribution -0.486 1.163 -1.173 1.722 sum 1.229 0.678 19.670 19.720 Atomic orbital electron populations 1.22102 0.97233 1.01231 0.99330 1.18864 0.91941 0.93071 0.83407 0.95492 1.21214 1.44325 0.94842 0.96163 0.92427 1.25600 0.93788 1.02325 0.95001 1.69970 1.46657 1.37728 1.02444 0.86056 0.79573 0.81523 0.77662 1.20039 1.20123 1.18306 1.46440 1.65118 1.14577 1.09445 1.21586 0.77113 0.87182 0.85890 1.90615 1.53451 1.18420 1.86165 1.21753 1.04319 0.99926 0.91020 1.21287 1.01290 0.96937 0.92873 1.22424 0.97716 0.99059 0.93942 0.89082 1.23202 1.00130 0.99152 0.96705 1.23177 0.89564 1.01615 0.94237 1.62744 1.32736 1.26408 1.09622 1.22898 0.90889 1.00019 0.95022 0.92303 0.94505 0.93562 0.91989 0.75841 0.86479 0.87248 0.93321 0.92563 0.92109 0.89862 0.89851 0.89875 0.84562 0.90081 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.06 9.47 71.98 0.68 -5.38 16 2 C 0.23 10.97 2.22 44.25 0.10 11.06 16 3 H 0.03 1.41 4.73 -2.39 -0.01 1.40 16 4 C -0.53 -28.50 9.05 25.60 0.23 -28.27 16 5 H 0.06 3.30 8.06 -2.91 -0.02 3.27 16 6 C 0.03 1.88 5.47 84.66 0.46 2.34 16 7 N -0.93 -55.36 13.96 21.45 0.30 -55.06 16 8 Si 0.93 44.89 26.99 68.60 1.85 46.74 16 9 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.26 -12.33 6.82 99.48 0.68 -11.65 16 12 N -0.71 -27.43 5.07 -446.11 -2.26 -29.69 16 13 C 0.49 17.92 7.79 87.66 0.68 18.60 16 14 O -0.60 -27.10 15.65 -3.05 -0.05 -27.15 16 15 C -0.13 -3.08 5.53 29.84 0.17 -2.92 16 16 C -0.09 -1.97 3.67 30.59 0.11 -1.86 16 17 C -0.11 -1.89 3.01 -9.91 -0.03 -1.92 16 18 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 19 C -0.15 -2.37 6.62 31.86 0.21 -2.16 16 20 C 0.04 0.62 7.55 86.71 0.65 1.28 16 21 N -0.69 -12.01 7.51 -501.90 -3.77 -15.78 16 22 C 0.04 0.72 6.73 86.45 0.58 1.30 16 23 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 26 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 27 H 0.41 13.59 8.59 -92.70 -0.80 12.79 16 28 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.11 2.21 6.97 -2.39 -0.02 2.19 16 30 H 0.05 1.30 8.10 -2.38 -0.02 1.28 16 31 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 32 H 0.06 1.06 7.86 -2.39 -0.02 1.04 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.34 5.62 8.92 -89.69 -0.80 4.82 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.21 6.81 -2.39 -0.02 1.19 16 Total: -1.00 -66.95 307.05 -0.65 -67.60 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.57 Total: 21.26 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 3.85 Total: -7.91 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -5.73 Total: -100.53 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.05 Total: -27.15 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.85 Total: 46.74 kcal Total: -66.95 -0.65 -67.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134553731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.923 kcal (2) G-P(sol) polarization free energy of solvation -66.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds