Wall clock time and date at job start Mon Mar 30 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46576 * 2 1 4 4 C 1.50702 * 109.47100 * 119.99676 * 2 1 3 5 5 H 1.08004 * 119.99698 * 120.00383 * 4 2 1 6 6 C 1.37871 * 120.00281 * 300.00215 * 4 2 1 7 7 N 1.31519 * 119.99893 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00252 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46947 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47151 * 120.00180 * 8 6 4 11 11 H 1.48498 * 109.47302 * 240.00255 * 8 6 4 12 12 N 1.46497 * 109.47218 * 239.99769 * 2 1 3 13 13 C 1.34780 * 119.99566 * 85.00262 * 12 2 1 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 13 18 18 H 1.09008 * 110.29036 * 52.87169 * 17 16 15 19 19 C 1.54264 * 110.32892 * 175.00090 * 17 16 15 20 20 C 1.54372 * 105.06160 * 118.89610 * 19 17 16 21 21 N 1.48559 * 104.59501 * 23.85406 * 20 19 17 22 22 C 1.48552 * 104.22349 * 320.51934 * 21 20 19 23 23 H 1.09000 * 109.47614 * 299.99524 * 1 2 3 24 24 H 1.08998 * 109.47302 * 60.00130 * 1 2 3 25 25 H 1.09006 * 109.46570 * 179.97438 * 1 2 3 26 26 H 0.96997 * 119.99814 * 179.97438 * 7 6 4 27 27 H 0.96995 * 120.00423 * 264.99567 * 12 2 1 28 28 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 29 29 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 30 30 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 31 31 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 32 32 H 1.09003 * 110.32332 * 237.79304 * 19 17 16 33 33 H 1.08997 * 110.32149 * 359.97438 * 19 17 16 34 34 H 1.08999 * 110.41066 * 142.63330 * 20 19 17 35 35 H 1.08997 * 110.41350 * 264.96020 * 20 19 17 36 36 H 1.00903 * 111.00257 * 200.95772 * 21 20 19 37 37 H 1.09002 * 110.40880 * 280.69935 * 22 21 20 38 38 H 1.09001 * 110.41592 * 158.26687 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6039 10 1 3.1465 -0.1872 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8583 1.1584 -2.4117 15 6 2.6489 -0.7288 -3.5877 16 6 2.7000 0.2542 -4.7590 17 6 3.2100 -0.4669 -6.0082 18 1 2.6214 -1.3657 -6.1927 19 6 3.1514 0.4722 -7.2306 20 6 4.6140 0.6027 -7.7067 21 7 5.2830 -0.6238 -7.2015 22 6 4.7032 -0.8249 -5.8487 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 0.7081 1.1608 3.4844 27 1 2.2491 -1.6317 -1.1526 28 1 3.6481 -1.1213 -3.3985 29 1 1.9760 -1.5506 -3.8326 30 1 1.7007 0.6464 -4.9480 31 1 3.3726 1.0763 -4.5145 32 1 2.5354 0.0337 -8.0157 33 1 2.7588 1.4468 -6.9407 34 1 4.6577 0.6386 -8.7952 35 1 5.0751 1.4929 -7.2789 36 1 6.2826 -0.4958 -7.1512 37 1 5.1789 -0.1592 -5.1285 38 1 4.8141 -1.8638 -5.5381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134553754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:05 Heat of formation + Delta-G solvation = -59.124611 kcal Electronic energy + Delta-G solvation = -17130.032046 eV Core-core repulsion = 14392.246952 eV Total energy + Delta-G solvation = -2737.785094 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26661 -38.38887 -34.86186 -33.41540 -32.33516 -30.03894 -29.09562 -27.79611 -25.25460 -23.80005 -21.77478 -20.78305 -19.85857 -19.31057 -17.12950 -16.44840 -15.98842 -15.41256 -15.14487 -15.12503 -14.16018 -13.97027 -13.17597 -13.08290 -12.64885 -12.44473 -12.30875 -12.11700 -11.86952 -11.66924 -11.31750 -11.12482 -10.95132 -10.83704 -10.68478 -10.64227 -10.43730 -10.29013 -10.23629 -9.03474 -8.94165 -8.80980 -8.54560 -7.87241 -6.12091 -4.21331 3.23358 3.31061 3.33819 3.46438 4.04179 4.18596 4.39052 4.52836 4.63422 4.91283 5.07500 5.19943 5.22639 5.35049 5.39606 5.50234 5.54338 5.68766 5.76488 5.79762 5.90070 5.94638 6.06073 6.28992 6.40791 6.56314 6.83840 6.98239 7.07506 7.16975 7.49421 7.58575 7.70993 7.93138 8.16300 8.70812 8.79871 9.18208 9.46790 10.93948 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048900 B = 0.004123 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.462325 B = 6789.746235 C = 7118.247954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.712 5.712 13 C 0.498 3.502 14 O -0.559 6.559 15 C -0.142 4.142 16 C -0.094 4.094 17 C -0.093 4.093 18 H 0.079 0.921 19 C -0.122 4.122 20 C 0.034 3.966 21 N -0.670 5.670 22 C 0.036 3.964 23 H 0.089 0.911 24 H 0.014 0.986 25 H 0.026 0.974 26 H 0.263 0.737 27 H 0.388 0.612 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.334 0.666 37 H 0.045 0.955 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -3.897 -15.906 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.359 5.359 13 C 0.283 3.717 14 O -0.439 6.439 15 C -0.183 4.183 16 C -0.132 4.132 17 C -0.112 4.112 18 H 0.098 0.902 19 C -0.160 4.160 20 C -0.096 4.096 21 N -0.298 5.298 22 C -0.093 4.093 23 H 0.108 0.892 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.220 0.780 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.149 0.851 37 H 0.063 0.937 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.949 -3.440 -16.140 17.228 hybrid contribution 0.842 -0.220 1.512 1.745 sum 5.791 -3.659 -14.627 16.152 Atomic orbital electron populations 1.22071 0.98545 0.99041 1.00844 1.18728 0.91009 0.93984 0.80232 0.93487 1.21274 1.32304 1.13161 0.90385 0.92053 1.24902 0.94838 0.94967 0.99089 1.69919 1.35949 1.22536 1.23737 0.86395 0.78605 0.79524 0.82579 1.19737 1.20882 1.20862 1.46549 1.65148 1.13518 1.10710 1.20537 0.78618 0.87589 0.84945 1.90642 1.51554 1.16332 1.85343 1.21714 1.02611 0.99695 0.94239 1.21420 1.02472 0.97415 0.91903 1.21958 0.95632 0.98827 0.94757 0.90247 1.22380 0.96084 1.00040 0.97520 1.22916 0.94816 0.91507 1.00338 1.63717 1.09146 1.35491 1.21457 1.23069 0.94698 1.01463 0.90070 0.89202 0.96707 0.95526 0.92652 0.77976 0.89667 0.89567 0.90977 0.91348 0.91170 0.90920 0.90461 0.94180 0.85088 0.93686 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.78 2.56 -69.08 -0.18 6.60 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.71 -14.92 5.07 -54.93 -0.28 -15.19 16 13 C 0.50 9.87 7.79 -10.98 -0.09 9.78 16 14 O -0.56 -13.43 15.64 5.56 0.09 -13.34 16 15 C -0.14 -1.96 5.57 -27.88 -0.16 -2.11 16 16 C -0.09 -1.22 3.68 -26.74 -0.10 -1.32 16 17 C -0.09 -0.98 3.06 -89.24 -0.27 -1.25 16 18 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 19 C -0.12 -1.20 6.65 -25.35 -0.17 -1.36 16 20 C 0.03 0.31 7.47 -2.19 -0.02 0.29 16 21 N -0.67 -6.51 7.62 -109.67 -0.84 -7.35 16 22 C 0.04 0.37 6.28 -2.19 -0.01 0.35 16 23 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.39 6.99 8.54 -40.82 -0.35 6.64 16 28 H 0.08 1.02 7.58 -51.93 -0.39 0.63 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 31 H 0.07 0.98 7.93 -51.93 -0.41 0.57 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.72 7.71 -51.93 -0.40 0.32 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.33 2.72 8.92 -39.29 -0.35 2.37 16 37 H 0.04 0.47 7.75 -51.93 -0.40 0.07 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 308.24 15.07 4.65 4.65 Total: -1.00 -30.92 308.24 -8.18 -39.10 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.36 Total: 6.22 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.04 Total: -5.27 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.49 Total: -47.04 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.92 -8.18 -39.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134553754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.026 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds