Wall clock time and date at job start Mon Mar 30 2020 03:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47024 * 2 1 4 4 C 1.50705 * 109.46992 * 240.00410 * 2 1 3 5 5 H 1.07999 * 119.99865 * 275.00210 * 4 2 1 6 6 C 1.37879 * 119.99680 * 95.00229 * 4 2 1 7 7 N 1.31517 * 119.99254 * 184.91582 * 6 4 2 8 8 Si 1.86790 * 120.00552 * 4.91059 * 6 4 2 9 9 H 1.48503 * 109.46968 * 84.83511 * 8 6 4 10 10 H 1.48500 * 109.47320 * 204.83679 * 8 6 4 11 11 H 1.48505 * 109.47027 * 324.83785 * 8 6 4 12 12 N 1.46500 * 109.47532 * 120.00403 * 2 1 3 13 13 C 1.34780 * 119.99605 * 275.00106 * 12 2 1 14 14 O 1.21287 * 119.99936 * 0.02562 * 13 12 2 15 15 C 1.50693 * 119.99848 * 179.97438 * 13 12 2 16 16 C 1.53001 * 109.47458 * 179.97438 * 15 13 12 17 17 C 1.52993 * 109.47147 * 180.02562 * 16 15 13 18 18 H 1.08996 * 110.64692 * 51.85183 * 17 16 15 19 19 C 1.54604 * 110.72058 * 175.00011 * 17 16 15 20 20 C 1.53998 * 105.13751 * 140.49502 * 19 17 16 21 21 N 1.47902 * 107.22626 * 1.12620 * 20 19 17 22 22 C 1.48813 * 105.67631 * 334.90329 * 21 20 19 23 23 H 1.08995 * 109.47304 * 55.03187 * 1 2 3 24 24 H 1.09004 * 109.46642 * 175.03603 * 1 2 3 25 25 H 1.08996 * 109.46946 * 295.03292 * 1 2 3 26 26 H 0.97008 * 119.99636 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00091 * 94.99817 * 12 2 1 28 28 H 1.09007 * 109.47059 * 59.99779 * 15 13 12 29 29 H 1.09003 * 109.47748 * 300.00134 * 15 13 12 30 30 H 1.08999 * 109.46845 * 59.99760 * 16 15 13 31 31 H 1.09005 * 109.46991 * 300.00270 * 16 15 13 32 32 H 1.08999 * 110.31157 * 21.58047 * 19 17 16 33 33 H 1.09001 * 110.30838 * 259.40810 * 19 17 16 34 34 H 1.08998 * 109.91820 * 120.57644 * 20 19 17 35 35 H 1.08998 * 109.91526 * 241.67551 * 20 19 17 36 36 H 1.00890 * 111.00105 * 95.28562 * 21 20 19 37 37 H 1.08994 * 110.51967 * 280.54187 * 22 21 20 38 38 H 1.09004 * 110.69254 * 157.49393 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3603 0.0123 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3135 1.8792 -2.3174 9 1 3.5991 2.3950 -1.7821 10 1 2.1057 2.3993 -3.6927 11 1 1.1986 2.3275 -1.4449 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6490 -0.7288 3.5876 16 6 2.7012 0.2544 4.7587 17 6 3.2114 -0.4669 6.0078 18 1 4.1444 -0.9891 5.7959 19 6 3.3944 0.5276 7.1773 20 6 2.9080 -0.2283 8.4278 21 7 2.5014 -1.5816 7.9910 22 6 2.1445 -1.4495 6.5524 23 1 -0.3633 0.5889 -0.8421 24 1 -0.3633 -1.0239 -0.0889 25 1 -0.3633 0.4348 0.9311 26 1 2.9370 -0.1046 -4.2555 27 1 2.2491 -1.6318 1.1525 28 1 3.6482 -1.1214 3.3984 29 1 1.9762 -1.5507 3.8325 30 1 1.7023 0.6473 4.9480 31 1 3.3744 1.0760 4.5136 32 1 2.7885 1.4188 7.0144 33 1 4.4451 0.7976 7.2833 34 1 3.7160 -0.3002 9.1558 35 1 2.0569 0.2912 8.8679 36 1 3.2526 -2.2432 8.1173 37 1 1.1442 -1.0303 6.4439 38 1 2.2157 -2.4131 6.0478 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134553777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:07 Heat of formation + Delta-G solvation = -60.579091 kcal Electronic energy + Delta-G solvation = -17177.997042 eV Core-core repulsion = 14440.148878 eV Total energy + Delta-G solvation = -2737.848165 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.38085 -38.55447 -34.97401 -33.46990 -32.33979 -30.22834 -29.48015 -28.02234 -25.31943 -23.83901 -21.86333 -20.65457 -20.07650 -19.50462 -17.38752 -16.82537 -15.92270 -15.52372 -15.41938 -14.59932 -14.15286 -14.01322 -13.91355 -13.20872 -12.74996 -12.50494 -12.48572 -12.34910 -12.08110 -11.65010 -11.42083 -11.30873 -11.09020 -10.94419 -10.79810 -10.77050 -10.58699 -10.54352 -9.88403 -9.20429 -9.09156 -8.87012 -8.70328 -8.06254 -6.24248 -4.27759 3.25076 3.32949 3.34011 3.41011 3.93290 4.10215 4.32050 4.48913 4.60308 4.80640 5.00705 5.10705 5.20096 5.27740 5.32365 5.34973 5.50590 5.66075 5.70688 5.75430 5.78900 5.90920 6.01316 6.22423 6.34565 6.35483 6.48840 6.53207 6.68781 6.94994 7.08866 7.19951 7.39011 7.57618 8.14625 8.59471 8.76597 9.02537 9.38269 10.87575 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049436 B = 0.004376 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.253175 B = 6397.451247 C = 6551.039841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.230 3.770 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.706 5.706 13 C 0.498 3.502 14 O -0.563 6.563 15 C -0.142 4.142 16 C -0.089 4.089 17 C -0.124 4.124 18 H 0.075 0.925 19 C -0.149 4.149 20 C 0.041 3.959 21 N -0.677 5.677 22 C 0.044 3.956 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.028 0.972 26 H 0.268 0.732 27 H 0.393 0.607 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.335 0.665 37 H 0.082 0.918 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 -1.521 19.109 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.127 3.873 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.354 5.354 13 C 0.284 3.716 14 O -0.443 6.443 15 C -0.182 4.182 16 C -0.127 4.127 17 C -0.144 4.144 18 H 0.093 0.907 19 C -0.188 4.188 20 C -0.089 4.089 21 N -0.304 5.304 22 C -0.085 4.085 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.226 0.774 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.101 0.899 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.676 -0.668 19.210 19.234 hybrid contribution 1.118 0.587 -0.704 1.446 sum 1.794 -0.081 18.507 18.593 Atomic orbital electron populations 1.22211 0.98672 1.00509 0.99189 1.19112 0.90887 0.94330 0.82970 0.93320 1.21028 1.45187 0.95618 0.95020 0.90369 1.24949 0.93638 0.98663 0.95152 1.69890 1.44843 1.36187 1.01696 0.86879 0.79777 0.85828 0.77321 1.19899 1.21171 1.18505 1.46651 1.64932 1.13855 1.09992 1.20629 0.78403 0.87590 0.85016 1.90635 1.51812 1.16370 1.85457 1.21712 1.02779 0.99709 0.94044 1.21252 1.02455 0.97416 0.91624 1.22784 0.99374 0.96913 0.95355 0.90693 1.22858 1.01673 0.99440 0.94861 1.22731 0.99704 0.89699 0.96779 1.62870 1.42189 1.07563 1.17733 1.23312 0.99052 0.99016 0.87168 0.92991 0.93452 0.95265 0.92252 0.77402 0.89483 0.89462 0.91047 0.91212 0.90805 0.91535 0.91877 0.90722 0.85032 0.89926 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.47 37.16 0.35 -2.91 16 2 C 0.23 5.51 2.22 -69.08 -0.15 5.36 16 3 H 0.05 1.28 4.73 -51.93 -0.25 1.04 16 4 C -0.53 -14.33 9.05 -34.44 -0.31 -14.64 16 5 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -26.27 13.96 55.43 0.77 -25.49 16 8 Si 0.88 21.75 26.99 -169.99 -4.59 17.16 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.26 -6.41 6.82 56.52 0.39 -6.02 16 12 N -0.71 -14.14 5.07 -54.93 -0.28 -14.42 16 13 C 0.50 9.38 7.79 -10.99 -0.09 9.30 16 14 O -0.56 -12.79 15.65 5.55 0.09 -12.71 16 15 C -0.14 -1.85 5.59 -27.89 -0.16 -2.01 16 16 C -0.09 -1.10 3.88 -26.73 -0.10 -1.20 16 17 C -0.12 -1.19 3.03 -88.76 -0.27 -1.46 16 18 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 19 C -0.15 -1.34 6.51 -25.37 -0.17 -1.51 16 20 C 0.04 0.34 7.51 -2.75 -0.02 0.32 16 21 N -0.68 -6.17 7.54 -109.87 -0.83 -6.99 16 22 C 0.04 0.41 6.41 -1.74 -0.01 0.40 16 23 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.39 6.87 8.59 -40.82 -0.35 6.51 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 0.96 7.67 -51.93 -0.40 0.56 16 30 H 0.07 0.96 7.96 -51.93 -0.41 0.55 16 31 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.33 2.54 8.92 -39.30 -0.35 2.19 16 37 H 0.08 0.86 7.95 -51.93 -0.41 0.44 16 38 H 0.08 0.64 8.12 -51.93 -0.42 0.21 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -31.43 308.56 -7.58 -39.01 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.38 Total: 4.98 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.02 Total: -6.20 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.33 Total: -46.90 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.59 Total: 17.16 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.43 -7.58 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134553777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.565 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds