Wall clock time and date at job start Mon Mar 30 2020 03:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47024 * 2 1 4 4 C 1.50705 * 109.46992 * 240.00410 * 2 1 3 5 5 H 1.07999 * 119.99865 * 275.00210 * 4 2 1 6 6 C 1.37879 * 119.99680 * 95.00229 * 4 2 1 7 7 N 1.31517 * 119.99254 * 184.91582 * 6 4 2 8 8 Si 1.86790 * 120.00552 * 4.91059 * 6 4 2 9 9 H 1.48503 * 109.46968 * 84.83511 * 8 6 4 10 10 H 1.48500 * 109.47320 * 204.83679 * 8 6 4 11 11 H 1.48505 * 109.47027 * 324.83785 * 8 6 4 12 12 N 1.46500 * 109.47532 * 120.00403 * 2 1 3 13 13 C 1.34780 * 119.99605 * 275.00106 * 12 2 1 14 14 O 1.21287 * 119.99936 * 0.02562 * 13 12 2 15 15 C 1.50693 * 119.99848 * 179.97438 * 13 12 2 16 16 C 1.53001 * 109.47458 * 179.97438 * 15 13 12 17 17 C 1.52993 * 109.47147 * 180.02562 * 16 15 13 18 18 H 1.08996 * 110.64692 * 51.85183 * 17 16 15 19 19 C 1.54604 * 110.72058 * 175.00011 * 17 16 15 20 20 C 1.53998 * 105.13751 * 140.49502 * 19 17 16 21 21 N 1.47902 * 107.22626 * 1.12620 * 20 19 17 22 22 C 1.48813 * 105.67631 * 334.90329 * 21 20 19 23 23 H 1.08995 * 109.47304 * 55.03187 * 1 2 3 24 24 H 1.09004 * 109.46642 * 175.03603 * 1 2 3 25 25 H 1.08996 * 109.46946 * 295.03292 * 1 2 3 26 26 H 0.97008 * 119.99636 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00091 * 94.99817 * 12 2 1 28 28 H 1.09007 * 109.47059 * 59.99779 * 15 13 12 29 29 H 1.09003 * 109.47748 * 300.00134 * 15 13 12 30 30 H 1.08999 * 109.46845 * 59.99760 * 16 15 13 31 31 H 1.09005 * 109.46991 * 300.00270 * 16 15 13 32 32 H 1.08999 * 110.31157 * 21.58047 * 19 17 16 33 33 H 1.09001 * 110.30838 * 259.40810 * 19 17 16 34 34 H 1.08998 * 109.91820 * 120.57644 * 20 19 17 35 35 H 1.08998 * 109.91526 * 241.67551 * 20 19 17 36 36 H 1.00890 * 111.00105 * 95.28562 * 21 20 19 37 37 H 1.08994 * 110.51967 * 280.54187 * 22 21 20 38 38 H 1.09004 * 110.69254 * 157.49393 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3603 0.0123 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3135 1.8792 -2.3174 9 1 3.5991 2.3950 -1.7821 10 1 2.1057 2.3993 -3.6927 11 1 1.1986 2.3275 -1.4449 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6490 -0.7288 3.5876 16 6 2.7012 0.2544 4.7587 17 6 3.2114 -0.4669 6.0078 18 1 4.1444 -0.9891 5.7959 19 6 3.3944 0.5276 7.1773 20 6 2.9080 -0.2283 8.4278 21 7 2.5014 -1.5816 7.9910 22 6 2.1445 -1.4495 6.5524 23 1 -0.3633 0.5889 -0.8421 24 1 -0.3633 -1.0239 -0.0889 25 1 -0.3633 0.4348 0.9311 26 1 2.9370 -0.1046 -4.2555 27 1 2.2491 -1.6318 1.1525 28 1 3.6482 -1.1214 3.3984 29 1 1.9762 -1.5507 3.8325 30 1 1.7023 0.6473 4.9480 31 1 3.3744 1.0760 4.5136 32 1 2.7885 1.4188 7.0144 33 1 4.4451 0.7976 7.2833 34 1 3.7160 -0.3002 9.1558 35 1 2.0569 0.2912 8.8679 36 1 3.2526 -2.2432 8.1173 37 1 1.1442 -1.0303 6.4439 38 1 2.2157 -2.4131 6.0478 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134553777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:07 Heat of formation + Delta-G solvation = -84.103630 kcal Electronic energy + Delta-G solvation = -17179.017143 eV Core-core repulsion = 14440.148878 eV Total energy + Delta-G solvation = -2738.868265 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.72305 -39.53517 -36.76327 -34.53511 -34.34761 -31.79250 -30.36736 -28.99308 -27.34520 -24.94420 -22.81264 -22.12030 -21.15366 -20.89220 -19.22216 -17.73393 -17.40595 -17.22044 -16.61685 -15.88658 -15.45772 -15.27204 -14.84517 -14.60997 -14.54128 -14.26852 -13.82799 -13.32529 -13.19835 -13.04767 -12.94183 -12.80251 -12.45799 -12.34690 -12.16511 -11.89471 -11.82265 -11.58075 -11.36281 -11.24391 -10.87494 -10.64732 -9.78208 -9.55563 -8.40676 -6.46528 1.27340 1.31847 1.42621 1.83979 2.25399 2.51953 3.02690 3.34295 3.70979 3.81318 3.98586 4.09025 4.23009 4.36958 4.44283 4.51952 4.55142 4.69233 4.70532 4.77483 4.81319 4.84836 4.99575 5.07746 5.09451 5.10967 5.17564 5.29736 5.37100 5.44170 5.45821 5.77516 5.80219 6.12280 6.50758 6.58658 6.95030 7.20073 7.52332 8.74390 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049436 B = 0.004376 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.253175 B = 6397.451247 C = 6551.039841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.231 3.769 3 H 0.027 0.973 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.033 3.967 7 N -0.930 5.930 8 Si 0.927 3.073 9 H -0.275 1.275 10 H -0.276 1.276 11 H -0.259 1.259 12 N -0.707 5.707 13 C 0.494 3.506 14 O -0.604 6.604 15 C -0.129 4.129 16 C -0.084 4.084 17 C -0.115 4.115 18 H 0.088 0.912 19 C -0.150 4.150 20 C 0.042 3.958 21 N -0.686 5.686 22 C 0.045 3.955 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.036 0.964 26 H 0.271 0.729 27 H 0.406 0.594 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.345 0.655 37 H 0.069 0.931 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 -2.020 20.843 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.127 3.873 3 H 0.045 0.955 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.168 4.168 7 N -0.568 5.568 8 Si 0.752 3.248 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.183 1.183 12 N -0.356 5.356 13 C 0.282 3.718 14 O -0.487 6.487 15 C -0.168 4.168 16 C -0.122 4.122 17 C -0.135 4.135 18 H 0.107 0.893 19 C -0.189 4.189 20 C -0.088 4.088 21 N -0.313 5.313 22 C -0.085 4.085 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.242 0.758 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.161 0.839 37 H 0.087 0.913 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.019 -1.196 20.969 21.028 hybrid contribution 1.006 0.696 -1.182 1.701 sum 2.025 -0.500 19.787 19.897 Atomic orbital electron populations 1.22103 0.97253 1.01235 0.99331 1.18864 0.91926 0.93080 0.83426 0.95493 1.21215 1.44257 0.94847 0.96148 0.92404 1.25603 0.93820 1.02334 0.95012 1.69981 1.46702 1.37706 1.02452 0.86053 0.79582 0.81519 0.77647 1.20028 1.20146 1.18310 1.46430 1.65228 1.14497 1.09432 1.21600 0.77116 0.87194 0.85888 1.90619 1.53426 1.18463 1.86149 1.21726 1.04369 0.99854 0.90896 1.21176 1.01257 0.97064 0.92717 1.22702 0.99906 0.96892 0.94019 0.89328 1.22859 1.02053 0.98989 0.94983 1.22724 0.99998 0.89300 0.96754 1.62828 1.42956 1.08052 1.17454 1.23282 0.98183 0.99445 0.87557 0.93588 0.92287 0.94503 0.92007 0.75828 0.87080 0.86549 0.92685 0.93043 0.91964 0.90649 0.90257 0.91390 0.83875 0.91260 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 9.47 71.98 0.68 -5.40 16 2 C 0.23 10.95 2.22 44.25 0.10 11.05 16 3 H 0.03 1.41 4.73 -2.39 -0.01 1.40 16 4 C -0.53 -28.43 9.05 25.60 0.23 -28.20 16 5 H 0.06 3.30 8.06 -2.91 -0.02 3.28 16 6 C 0.03 1.84 5.47 84.65 0.46 2.31 16 7 N -0.93 -55.35 13.96 21.45 0.30 -55.05 16 8 Si 0.93 44.91 26.99 68.60 1.85 46.76 16 9 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.26 -12.35 6.82 99.48 0.68 -11.67 16 12 N -0.71 -27.34 5.07 -446.08 -2.26 -29.61 16 13 C 0.49 17.88 7.79 87.65 0.68 18.56 16 14 O -0.60 -27.18 15.65 -3.05 -0.05 -27.23 16 15 C -0.13 -3.00 5.59 29.85 0.17 -2.84 16 16 C -0.08 -1.93 3.88 30.59 0.12 -1.81 16 17 C -0.12 -1.93 3.03 -9.59 -0.03 -1.95 16 18 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 19 C -0.15 -2.42 6.51 31.48 0.20 -2.22 16 20 C 0.04 0.62 7.51 86.45 0.65 1.27 16 21 N -0.69 -10.76 7.54 -501.52 -3.78 -14.53 16 22 C 0.04 0.72 6.41 86.59 0.55 1.28 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 27 H 0.41 13.49 8.59 -92.71 -0.80 12.69 16 28 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.12 2.10 7.67 -2.39 -0.02 2.09 16 30 H 0.05 1.45 7.96 -2.39 -0.02 1.43 16 31 H 0.05 1.37 8.10 -2.38 -0.02 1.35 16 32 H 0.06 1.15 7.85 -2.39 -0.02 1.13 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.35 4.21 8.92 -89.70 -0.80 3.41 16 37 H 0.07 1.31 7.95 -2.39 -0.02 1.29 16 38 H 0.09 1.19 8.12 -2.39 -0.02 1.17 16 Total: -1.00 -67.40 308.56 -0.69 -68.09 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -0.58 Total: 19.52 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 3.82 Total: -7.95 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -5.74 Total: -99.19 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.85 Total: 46.76 kcal Total: -67.40 -0.69 -68.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134553777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.013 kcal (2) G-P(sol) polarization free energy of solvation -67.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds