Wall clock time and date at job start Mon Mar 30 2020 03:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 C 1.52998 * 110.01817 * 301.39169 * 15 13 12 17 17 C 1.54273 * 110.03108 * 62.83047 * 15 13 12 18 18 C 1.54890 * 104.19626 * 95.67942 * 17 15 13 19 19 C 1.54893 * 102.74973 * 37.93639 * 18 17 15 20 20 C 1.53877 * 110.03463 * 179.97438 * 15 13 12 21 21 H 1.08995 * 110.02796 * 0.02562 * 20 15 13 22 22 N 1.46903 * 110.03121 * 121.43142 * 20 15 13 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 28 28 H 1.08996 * 109.47376 * 59.29739 * 16 15 13 29 29 H 1.09004 * 109.47589 * 179.29998 * 16 15 13 30 30 H 1.09002 * 109.46776 * 299.30042 * 16 15 13 31 31 H 1.09007 * 110.48130 * 214.35036 * 17 15 13 32 32 H 1.08989 * 110.48706 * 336.99533 * 17 15 13 33 33 H 1.09003 * 110.74819 * 279.62565 * 18 17 15 34 34 H 1.08993 * 110.75717 * 156.25290 * 18 17 15 35 35 H 1.08998 * 110.48468 * 203.38036 * 19 18 17 36 36 H 1.08998 * 110.47967 * 80.73898 * 19 18 17 37 37 H 1.00896 * 110.99888 * 180.02562 * 22 20 15 38 38 H 1.00903 * 110.99353 * 303.95289 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 6 1.7319 -1.9067 3.9229 17 6 4.0903 -1.2282 3.3587 18 6 4.9792 -0.1160 3.9687 19 6 4.1799 0.3097 5.2253 20 6 2.7063 0.2493 4.7745 21 1 2.3709 1.2376 4.4603 22 7 1.8642 -0.2425 5.8731 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 2.2490 -1.6317 1.1527 28 1 1.7078 -2.5992 3.0815 29 1 2.1096 -2.4214 4.8064 30 1 0.7248 -1.5388 4.1195 31 1 4.2532 -2.1735 3.8764 32 1 4.2918 -1.3361 2.2930 33 1 5.0829 0.7190 3.2757 34 1 5.9557 -0.5115 4.2476 35 1 4.4469 1.3240 5.5217 36 1 4.3573 -0.3873 6.0443 37 1 1.8909 0.3888 6.6597 38 1 0.9160 -0.3927 5.5624 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134937443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:51 Heat of formation + Delta-G solvation = -54.400200 kcal Electronic energy + Delta-G solvation = -18210.525341 eV Core-core repulsion = 15472.945114 eV Total energy + Delta-G solvation = -2737.580228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.08249 -37.23585 -34.73792 -32.79625 -32.38350 -31.21343 -28.55001 -26.47777 -25.25510 -25.05113 -22.15605 -20.81102 -19.70875 -18.49462 -17.07555 -16.00453 -15.55056 -15.27794 -15.14448 -14.66903 -14.07351 -13.81042 -13.47659 -13.11725 -12.48619 -12.39584 -12.04742 -11.67362 -11.52475 -11.23159 -11.07412 -10.95917 -10.93932 -10.81625 -10.67974 -10.56312 -10.49581 -10.29819 -10.23104 -9.04083 -8.87291 -8.55396 -8.48444 -7.87512 -6.12078 -4.21358 3.24175 3.31002 3.33239 3.43645 4.05762 4.36552 4.60183 4.71016 4.80112 5.13631 5.20163 5.43466 5.45932 5.57749 5.67264 5.71089 5.83469 5.94231 6.03567 6.06573 6.16496 6.26056 6.30034 6.45460 6.47727 6.82879 6.96945 7.15942 7.25881 7.47935 7.50280 7.58304 7.70661 7.92427 8.15659 8.70255 8.79325 9.16458 9.46615 10.93905 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037378 B = 0.006181 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.928172 B = 4529.185009 C = 4777.154655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.705 5.705 13 C 0.511 3.489 14 O -0.558 6.558 15 C -0.083 4.083 16 C -0.123 4.123 17 C -0.109 4.109 18 C -0.124 4.124 19 C -0.114 4.114 20 C 0.092 3.908 21 H 0.067 0.933 22 N -0.843 5.843 23 H 0.026 0.974 24 H 0.090 0.910 25 H 0.013 0.987 26 H 0.264 0.736 27 H 0.388 0.612 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.335 0.665 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -4.726 13.104 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.352 5.352 13 C 0.295 3.705 14 O -0.438 6.438 15 C -0.087 4.087 16 C -0.180 4.180 17 C -0.147 4.147 18 C -0.162 4.162 19 C -0.152 4.152 20 C -0.019 4.019 21 H 0.085 0.915 22 N -0.373 5.373 23 H 0.045 0.955 24 H 0.108 0.892 25 H 0.032 0.968 26 H 0.074 0.926 27 H 0.221 0.779 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.146 0.854 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.246 -4.377 12.953 14.316 hybrid contribution -0.232 0.007 -1.112 1.136 sum 4.014 -4.370 11.841 13.244 Atomic orbital electron populations 1.22072 0.98571 0.99049 1.00781 1.18726 0.90959 0.93947 0.80151 0.93510 1.21223 1.32383 1.13164 0.90354 0.92102 1.24892 0.94831 0.94939 0.99062 1.69902 1.35940 1.22474 1.23848 0.86451 0.79177 0.79278 0.82215 1.20539 1.21074 1.19847 1.46474 1.64811 1.13469 1.10425 1.20299 0.78124 0.87229 0.84833 1.90601 1.51927 1.16318 1.84956 1.21397 0.97085 0.96501 0.93681 1.21641 0.98508 0.96153 1.01743 1.22430 0.92139 0.98555 1.01601 1.22445 0.97984 0.98655 0.97092 1.22384 0.93833 1.00945 0.98086 1.21963 0.93475 0.97076 0.89420 0.91522 1.59089 1.15355 1.53425 1.09418 0.95497 0.89188 0.96817 0.92595 0.77945 0.92769 0.90681 0.92818 0.90704 0.90904 0.91304 0.91423 0.92138 0.90780 0.85358 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.80 2.56 -69.09 -0.18 6.63 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.70 -14.89 4.66 -54.94 -0.26 -15.14 16 13 C 0.51 10.34 6.40 -10.99 -0.07 10.27 16 14 O -0.56 -13.52 14.87 5.56 0.08 -13.43 16 15 C -0.08 -1.26 0.78 -154.54 -0.12 -1.38 16 16 C -0.12 -1.62 7.19 37.16 0.27 -1.35 16 17 C -0.11 -1.48 5.88 -25.07 -0.15 -1.62 16 18 C -0.12 -1.59 6.91 -24.74 -0.17 -1.76 16 19 C -0.11 -1.42 6.53 -25.10 -0.16 -1.58 16 20 C 0.09 1.32 3.62 -66.62 -0.24 1.07 16 21 H 0.07 1.16 6.39 -51.93 -0.33 0.83 16 22 N -0.84 -9.86 8.02 -3.74 -0.03 -9.89 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.39 7.24 7.80 -40.82 -0.32 6.92 16 28 H 0.05 0.69 7.52 -51.93 -0.39 0.30 16 29 H 0.07 0.90 7.76 -51.93 -0.40 0.49 16 30 H 0.05 0.72 6.84 -51.93 -0.36 0.36 16 31 H 0.07 0.87 7.85 -51.92 -0.41 0.46 16 32 H 0.07 1.06 7.50 -51.93 -0.39 0.67 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.33 3.34 9.07 -39.29 -0.36 2.98 16 38 H 0.34 3.98 7.19 -39.29 -0.28 3.70 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -30.05 299.26 -6.98 -37.02 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.02 Total: 11.61 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.87 Total: -5.90 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.34 Total: -49.50 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.05 -6.98 -37.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134937443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.377 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds