Wall clock time and date at job start Mon Mar 30 2020 03:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 C 1.52998 * 110.01817 * 301.39169 * 15 13 12 17 17 C 1.54273 * 110.03108 * 62.83047 * 15 13 12 18 18 C 1.54890 * 104.19626 * 95.67942 * 17 15 13 19 19 C 1.54893 * 102.74973 * 37.93639 * 18 17 15 20 20 C 1.53877 * 110.03463 * 179.97438 * 15 13 12 21 21 H 1.08995 * 110.02796 * 0.02562 * 20 15 13 22 22 N 1.46903 * 110.03121 * 121.43142 * 20 15 13 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 28 28 H 1.08996 * 109.47376 * 59.29739 * 16 15 13 29 29 H 1.09004 * 109.47589 * 179.29998 * 16 15 13 30 30 H 1.09002 * 109.46776 * 299.30042 * 16 15 13 31 31 H 1.09007 * 110.48130 * 214.35036 * 17 15 13 32 32 H 1.08989 * 110.48706 * 336.99533 * 17 15 13 33 33 H 1.09003 * 110.74819 * 279.62565 * 18 17 15 34 34 H 1.08993 * 110.75717 * 156.25290 * 18 17 15 35 35 H 1.08998 * 110.48468 * 203.38036 * 19 18 17 36 36 H 1.08998 * 110.47967 * 80.73898 * 19 18 17 37 37 H 1.00896 * 110.99888 * 180.02562 * 22 20 15 38 38 H 1.00903 * 110.99353 * 303.95289 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 6 1.7319 -1.9067 3.9229 17 6 4.0903 -1.2282 3.3587 18 6 4.9792 -0.1160 3.9687 19 6 4.1799 0.3097 5.2253 20 6 2.7063 0.2493 4.7745 21 1 2.3709 1.2376 4.4603 22 7 1.8642 -0.2425 5.8731 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 2.2490 -1.6317 1.1527 28 1 1.7078 -2.5992 3.0815 29 1 2.1096 -2.4214 4.8064 30 1 0.7248 -1.5388 4.1195 31 1 4.2532 -2.1735 3.8764 32 1 4.2918 -1.3361 2.2930 33 1 5.0829 0.7190 3.2757 34 1 5.9557 -0.5115 4.2476 35 1 4.4469 1.3240 5.5217 36 1 4.3573 -0.3873 6.0443 37 1 1.8909 0.3888 6.6597 38 1 0.9160 -0.3927 5.5624 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134937443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:50 Heat of formation + Delta-G solvation = -75.982985 kcal Electronic energy + Delta-G solvation = -18211.461241 eV Core-core repulsion = 15472.945114 eV Total energy + Delta-G solvation = -2738.516128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.50952 -38.70121 -36.67326 -34.48338 -33.59491 -32.57959 -30.40400 -27.51164 -27.36593 -26.21339 -23.82280 -22.16926 -21.28651 -20.06190 -18.54372 -17.71378 -17.18990 -16.69781 -16.36824 -16.18433 -15.66149 -15.18375 -14.79693 -14.59555 -14.38087 -13.86259 -13.46846 -13.15733 -13.01468 -12.85787 -12.73713 -12.68367 -12.32916 -12.24707 -12.14841 -11.99117 -11.81335 -11.65458 -11.59208 -11.12393 -10.65671 -10.47049 -9.75870 -9.55792 -8.19326 -6.37317 1.43846 1.44734 1.55454 1.81734 2.33757 2.59498 3.10949 3.47974 3.64218 3.65644 3.98509 4.19354 4.38932 4.40971 4.57791 4.61575 4.71324 4.79507 4.87603 4.93589 4.99100 5.06329 5.07482 5.12767 5.17452 5.22211 5.38122 5.42737 5.45728 5.60052 5.66525 5.88681 6.07739 6.22678 6.59588 6.70747 6.96075 7.30547 7.54663 8.87113 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037378 B = 0.006181 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.928172 B = 4529.185009 C = 4777.154655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.700 5.700 13 C 0.505 3.495 14 O -0.605 6.605 15 C -0.076 4.076 16 C -0.118 4.118 17 C -0.107 4.107 18 C -0.125 4.125 19 C -0.106 4.106 20 C 0.092 3.908 21 H 0.027 0.973 22 N -0.829 5.829 23 H 0.041 0.959 24 H 0.066 0.934 25 H 0.009 0.991 26 H 0.266 0.734 27 H 0.403 0.597 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.346 0.654 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -7.241 14.119 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.187 1.187 12 N -0.348 5.348 13 C 0.292 3.708 14 O -0.487 6.487 15 C -0.080 4.080 16 C -0.175 4.175 17 C -0.145 4.145 18 C -0.163 4.163 19 C -0.144 4.144 20 C -0.020 4.020 21 H 0.045 0.955 22 N -0.360 5.360 23 H 0.060 0.940 24 H 0.085 0.915 25 H 0.028 0.972 26 H 0.075 0.925 27 H 0.238 0.762 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.159 0.841 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.411 -6.925 14.003 16.532 hybrid contribution -0.613 0.863 -1.385 1.743 sum 4.799 -6.063 12.618 14.798 Atomic orbital electron populations 1.21888 0.98377 0.99437 0.99389 1.18325 0.91068 0.91757 0.82161 0.98799 1.21537 1.32622 1.13538 0.90777 0.90864 1.25829 0.94841 0.95553 1.02411 1.70055 1.37043 1.23988 1.24636 0.85316 0.79026 0.78027 0.77801 1.19520 1.21227 1.18746 1.46231 1.64910 1.14033 1.09619 1.21296 0.76786 0.86814 0.85864 1.90582 1.53652 1.18662 1.85807 1.21424 0.98603 0.96943 0.90993 1.21656 0.97789 0.95196 1.02891 1.22490 0.90606 1.00075 1.01329 1.22474 0.99475 0.97675 0.96701 1.22353 0.91936 1.01815 0.98317 1.21870 0.95319 0.94867 0.89962 0.95497 1.59091 1.15088 1.53144 1.08714 0.93993 0.91496 0.97229 0.92532 0.76210 0.92231 0.88425 0.93297 0.87524 0.92244 0.94043 0.88598 0.91818 0.88682 0.84053 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 14.39 2.56 44.24 0.11 14.50 16 3 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 4 C -0.55 -29.33 8.73 25.60 0.22 -29.10 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.39 11.32 21.45 0.24 -53.14 16 8 Si 0.97 42.20 29.54 68.60 2.03 44.22 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 12 N -0.70 -29.91 4.66 -446.11 -2.08 -31.99 16 13 C 0.51 20.86 6.40 87.66 0.56 21.42 16 14 O -0.60 -30.77 14.87 -3.03 -0.04 -30.82 16 15 C -0.08 -2.21 0.78 -52.20 -0.04 -2.26 16 16 C -0.12 -2.80 7.19 71.98 0.52 -2.28 16 17 C -0.11 -2.64 5.88 31.67 0.19 -2.46 16 18 C -0.13 -2.98 6.91 31.89 0.22 -2.76 16 19 C -0.11 -2.40 6.53 31.65 0.21 -2.19 16 20 C 0.09 2.54 3.62 45.62 0.17 2.70 16 21 H 0.03 0.97 6.39 -2.39 -0.02 0.96 16 22 N -0.83 -17.68 8.02 -165.74 -1.33 -19.01 16 23 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 25 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 26 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.40 14.71 7.80 -92.70 -0.72 13.99 16 28 H 0.06 1.36 7.52 -2.39 -0.02 1.34 16 29 H 0.10 1.93 7.76 -2.38 -0.02 1.91 16 30 H 0.05 1.21 6.84 -2.39 -0.02 1.19 16 31 H 0.11 2.01 7.85 -2.38 -0.02 1.99 16 32 H 0.06 1.64 7.50 -2.39 -0.02 1.62 16 33 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.79 8.05 -2.39 -0.02 1.77 16 37 H 0.35 6.18 9.07 -89.70 -0.81 5.37 16 38 H 0.34 7.41 7.19 -89.69 -0.65 6.77 16 Total: -1.00 -67.15 299.26 0.98 -66.17 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -1.11 Total: 32.00 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 3.27 Total: -7.44 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -3.17 Total: -104.14 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.04 Total: -30.82 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -67.15 0.98 -66.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134937443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.808 kcal (2) G-P(sol) polarization free energy of solvation -67.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds