Wall clock time and date at job start Mon Mar 30 2020 03:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46869 * 2 1 4 4 N 1.46903 * 109.47484 * 239.99919 * 2 1 3 5 5 C 1.46903 * 110.99953 * 84.99686 * 4 2 1 6 6 C 1.50691 * 109.46839 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00650 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99892 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00081 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00143 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47135 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47286 * 120.00358 * 10 8 6 13 13 H 1.48500 * 109.47488 * 240.00486 * 10 8 6 14 14 C 1.50703 * 109.47205 * 119.99607 * 2 1 3 15 15 O 1.21284 * 119.99743 * 93.72574 * 14 2 1 16 16 N 1.34778 * 119.99871 * 273.72095 * 14 2 1 17 17 C 1.46923 * 120.63087 * 4.69845 * 16 14 2 18 18 C 1.53628 * 108.54112 * 126.36496 * 17 16 14 19 19 C 1.53045 * 109.24005 * 54.85659 * 18 17 16 20 20 C 1.53034 * 109.53722 * 298.51077 * 19 18 17 21 21 C 1.46930 * 120.62688 * 184.97518 * 16 14 2 22 22 H 1.08997 * 109.46943 * 177.89179 * 1 2 3 23 23 H 1.08994 * 109.47082 * 297.89092 * 1 2 3 24 24 H 1.09002 * 109.47328 * 57.89405 * 1 2 3 25 25 H 1.00900 * 110.99193 * 321.04707 * 4 2 1 26 26 H 1.08999 * 109.47000 * 300.00287 * 5 4 2 27 27 H 1.09003 * 109.46976 * 59.99860 * 5 4 2 28 28 H 0.97002 * 120.00715 * 179.97438 * 9 8 6 29 29 H 1.09001 * 109.58795 * 246.19594 * 17 16 14 30 30 H 1.09001 * 109.58838 * 6.62918 * 17 16 14 31 31 H 1.08997 * 109.63634 * 294.86824 * 18 17 16 32 32 H 1.09002 * 109.43428 * 174.72039 * 18 17 16 33 33 H 1.09000 * 109.45776 * 178.48577 * 19 18 17 34 34 H 1.08999 * 109.46197 * 58.53229 * 19 18 17 35 35 H 1.09004 * 109.49960 * 301.40950 * 20 19 18 36 36 H 1.09004 * 109.49949 * 181.32119 * 20 19 18 37 37 H 1.09000 * 109.58662 * 353.37628 * 21 16 14 38 38 H 1.08999 * 109.58040 * 113.80186 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5875 -0.5218 -3.5559 7 1 2.8364 -1.5699 -3.4797 8 6 2.7306 0.1349 -4.7598 9 7 2.4270 1.4111 -4.8528 10 14 3.3572 -0.7876 -6.2583 11 1 3.6260 -2.2016 -5.8925 12 1 2.3329 -0.7408 -7.3325 13 1 4.6104 -0.1541 -6.7414 14 6 2.0324 -0.7103 1.2305 15 8 2.2989 -1.8925 1.1819 16 7 2.1856 -0.0318 2.3849 17 6 1.7710 1.3739 2.4877 18 6 0.8224 1.5170 3.6877 19 6 1.5097 0.9715 4.9416 20 6 1.8214 -0.5143 4.7490 21 6 2.7760 -0.6822 3.5628 22 1 -0.3633 -1.0269 -0.0378 23 1 -0.3633 0.4807 0.9082 24 1 -0.3634 0.5462 -0.8705 25 1 1.4496 -1.4979 -1.4099 26 1 1.0871 0.6162 -2.5525 27 1 2.7589 1.0462 -2.1182 28 1 2.5280 1.8733 -5.6996 29 1 2.6483 2.0039 2.6348 30 1 1.2546 1.6703 1.5747 31 1 -0.0924 0.9548 3.5005 32 1 0.5797 2.5695 3.8346 33 1 0.8500 1.0959 5.8004 34 1 2.4370 1.5177 5.1143 35 1 0.8970 -1.0575 4.5518 36 1 2.2895 -0.9079 5.6513 37 1 2.9230 -1.7429 3.3592 38 1 3.7336 -0.2165 3.7956 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156830271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:24 Heat of formation + Delta-G solvation = -46.390137 kcal Electronic energy + Delta-G solvation = -17676.915445 eV Core-core repulsion = 14939.682559 eV Total energy + Delta-G solvation = -2737.232885 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.04460 -37.34241 -35.52700 -33.02095 -32.51475 -31.22769 -29.56316 -26.06932 -25.65312 -23.76252 -22.80564 -21.53226 -20.57773 -18.61927 -17.24452 -16.35141 -15.58604 -15.07626 -14.73900 -14.66363 -14.24073 -13.94413 -13.76710 -13.65179 -13.23178 -12.92351 -12.40644 -12.19507 -11.94482 -11.84604 -11.38945 -11.32001 -11.09935 -11.02128 -10.77124 -10.76091 -10.68416 -10.63554 -9.96724 -9.40666 -9.04516 -8.49924 -8.47170 -7.28282 -6.03364 -4.04456 3.03784 3.14674 3.32844 3.40058 3.46870 4.44662 4.56445 4.66080 4.71713 4.91700 5.02770 5.18129 5.25082 5.33051 5.34436 5.40369 5.45591 5.56079 5.63856 5.68916 5.72912 5.79455 5.85854 5.97006 5.97383 6.11618 6.16084 6.37066 6.66702 7.17315 7.38983 7.58690 7.80339 8.10376 8.38236 8.55737 8.62203 9.05348 9.60543 11.07864 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047873 B = 0.004794 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.738786 B = 5839.334717 C = 6087.270624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.068 3.932 3 H 0.092 0.908 4 N -0.670 5.670 5 C 0.196 3.804 6 C -0.512 4.512 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.899 3.101 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.528 3.472 15 O -0.528 6.528 16 N -0.621 5.621 17 C 0.105 3.895 18 C -0.135 4.135 19 C -0.119 4.119 20 C -0.134 4.134 21 C 0.111 3.889 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.339 0.661 26 H -0.010 1.010 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 2.131 18.651 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.046 4.046 3 H 0.110 0.890 4 N -0.301 5.301 5 C 0.069 3.931 6 C -0.551 4.551 7 H 0.083 0.917 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.727 3.273 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.316 3.684 15 O -0.403 6.403 16 N -0.357 5.357 17 C -0.019 4.019 18 C -0.173 4.173 19 C -0.157 4.157 20 C -0.172 4.172 21 C -0.012 4.012 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.158 0.842 26 H 0.008 0.992 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.207 1.695 18.618 18.968 hybrid contribution -0.596 -0.071 -1.001 1.167 sum -3.803 1.624 17.617 18.096 Atomic orbital electron populations 1.22432 0.95745 1.02748 1.02403 1.21467 0.93561 0.98449 0.91161 0.88987 1.60408 1.55844 1.10283 1.03601 1.19629 0.95399 0.91678 0.86359 1.21223 1.43340 0.97124 0.93395 0.91748 1.24971 0.95603 0.94939 0.99004 1.69964 1.49081 1.09003 1.25850 0.86414 0.78394 0.80112 0.82363 1.19570 1.21091 1.20996 1.21025 0.76487 0.87205 0.83691 1.90622 1.49710 1.15787 1.84146 1.48148 1.63515 1.12409 1.11624 1.21858 0.98311 0.82259 0.99442 1.22001 0.98868 1.01464 0.94990 1.21509 1.00694 0.95950 0.97519 1.21908 1.00359 0.96789 0.98140 1.21501 0.95292 0.99823 0.84566 0.92088 0.92637 0.90990 0.84244 0.99226 0.95441 0.92982 0.91458 0.89213 0.91477 0.90799 0.91927 0.91796 0.91642 0.91065 0.89107 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 8.90 37.16 0.33 -2.35 16 2 C 0.07 1.24 2.12 -68.86 -0.15 1.09 16 3 H 0.09 1.62 6.31 -51.92 -0.33 1.29 16 4 N -0.67 -15.28 5.87 -109.21 -0.64 -15.92 16 5 C 0.20 5.14 5.24 -4.98 -0.03 5.11 16 6 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 7 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 10 Si 0.90 22.00 29.54 -169.99 -5.02 16.97 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.53 9.52 6.89 -10.98 -0.08 9.44 16 15 O -0.53 -11.43 16.05 5.55 0.09 -11.34 16 16 N -0.62 -8.67 2.97 -172.50 -0.51 -9.18 16 17 C 0.10 1.13 6.02 -3.49 -0.02 1.11 16 18 C -0.13 -1.16 6.10 -26.38 -0.16 -1.32 16 19 C -0.12 -0.95 5.88 -26.69 -0.16 -1.11 16 20 C -0.13 -1.24 6.08 -26.62 -0.16 -1.40 16 21 C 0.11 1.34 6.44 -3.71 -0.02 1.32 16 22 H 0.06 0.96 8.10 -51.93 -0.42 0.53 16 23 H 0.05 0.70 7.28 -51.93 -0.38 0.32 16 24 H 0.07 1.16 7.51 -51.93 -0.39 0.77 16 25 H 0.34 7.70 8.44 -39.29 -0.33 7.37 16 26 H -0.01 -0.27 7.47 -51.93 -0.39 -0.66 16 27 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.99 4.91 -51.93 -0.25 0.73 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 303.80 15.07 4.58 4.58 Total: -1.00 -32.61 303.80 -7.83 -40.44 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.20 Total: 2.18 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.86 Total: -1.69 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.42 Total: -51.14 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.61 -7.83 -40.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156830271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.950 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds