Wall clock time and date at job start Mon Mar 30 2020 03:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46869 * 2 1 4 4 N 1.46903 * 109.47484 * 239.99919 * 2 1 3 5 5 C 1.46903 * 110.99953 * 84.99686 * 4 2 1 6 6 C 1.50691 * 109.46839 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00650 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99892 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00081 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00143 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47135 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47286 * 120.00358 * 10 8 6 13 13 H 1.48500 * 109.47488 * 240.00486 * 10 8 6 14 14 C 1.50703 * 109.47205 * 119.99607 * 2 1 3 15 15 O 1.21284 * 119.99743 * 93.72574 * 14 2 1 16 16 N 1.34778 * 119.99871 * 273.72095 * 14 2 1 17 17 C 1.46923 * 120.63087 * 4.69845 * 16 14 2 18 18 C 1.53628 * 108.54112 * 126.36496 * 17 16 14 19 19 C 1.53045 * 109.24005 * 54.85659 * 18 17 16 20 20 C 1.53034 * 109.53722 * 298.51077 * 19 18 17 21 21 C 1.46930 * 120.62688 * 184.97518 * 16 14 2 22 22 H 1.08997 * 109.46943 * 177.89179 * 1 2 3 23 23 H 1.08994 * 109.47082 * 297.89092 * 1 2 3 24 24 H 1.09002 * 109.47328 * 57.89405 * 1 2 3 25 25 H 1.00900 * 110.99193 * 321.04707 * 4 2 1 26 26 H 1.08999 * 109.47000 * 300.00287 * 5 4 2 27 27 H 1.09003 * 109.46976 * 59.99860 * 5 4 2 28 28 H 0.97002 * 120.00715 * 179.97438 * 9 8 6 29 29 H 1.09001 * 109.58795 * 246.19594 * 17 16 14 30 30 H 1.09001 * 109.58838 * 6.62918 * 17 16 14 31 31 H 1.08997 * 109.63634 * 294.86824 * 18 17 16 32 32 H 1.09002 * 109.43428 * 174.72039 * 18 17 16 33 33 H 1.09000 * 109.45776 * 178.48577 * 19 18 17 34 34 H 1.08999 * 109.46197 * 58.53229 * 19 18 17 35 35 H 1.09004 * 109.49960 * 301.40950 * 20 19 18 36 36 H 1.09004 * 109.49949 * 181.32119 * 20 19 18 37 37 H 1.09000 * 109.58662 * 353.37628 * 21 16 14 38 38 H 1.08999 * 109.58040 * 113.80186 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5875 -0.5218 -3.5559 7 1 2.8364 -1.5699 -3.4797 8 6 2.7306 0.1349 -4.7598 9 7 2.4270 1.4111 -4.8528 10 14 3.3572 -0.7876 -6.2583 11 1 3.6260 -2.2016 -5.8925 12 1 2.3329 -0.7408 -7.3325 13 1 4.6104 -0.1541 -6.7414 14 6 2.0324 -0.7103 1.2305 15 8 2.2989 -1.8925 1.1819 16 7 2.1856 -0.0318 2.3849 17 6 1.7710 1.3739 2.4877 18 6 0.8224 1.5170 3.6877 19 6 1.5097 0.9715 4.9416 20 6 1.8214 -0.5143 4.7490 21 6 2.7760 -0.6822 3.5628 22 1 -0.3633 -1.0269 -0.0378 23 1 -0.3633 0.4807 0.9082 24 1 -0.3634 0.5462 -0.8705 25 1 1.4496 -1.4979 -1.4099 26 1 1.0871 0.6162 -2.5525 27 1 2.7589 1.0462 -2.1182 28 1 2.5280 1.8733 -5.6996 29 1 2.6483 2.0039 2.6348 30 1 1.2546 1.6703 1.5747 31 1 -0.0924 0.9548 3.5005 32 1 0.5797 2.5695 3.8346 33 1 0.8500 1.0959 5.8004 34 1 2.4370 1.5177 5.1143 35 1 0.8970 -1.0575 4.5518 36 1 2.2895 -0.9079 5.6513 37 1 2.9230 -1.7429 3.3592 38 1 3.7336 -0.2165 3.7956 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156830271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:23 Heat of formation + Delta-G solvation = -69.076943 kcal Electronic energy + Delta-G solvation = -17677.899218 eV Core-core repulsion = 14939.682559 eV Total energy + Delta-G solvation = -2738.216659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29707 -38.48539 -37.22153 -34.85222 -33.81507 -32.23538 -31.14448 -27.99464 -26.79081 -24.90750 -24.11341 -23.20737 -21.60868 -19.82807 -18.79783 -18.13449 -17.02053 -16.61907 -16.28402 -15.69531 -15.49528 -15.22473 -15.08108 -14.70823 -14.50486 -14.18454 -14.09013 -13.52414 -13.40862 -13.18540 -13.13871 -12.71121 -12.54554 -12.43084 -12.19721 -12.04867 -11.83352 -11.59485 -11.46435 -11.39329 -10.69577 -10.61761 -9.61335 -9.11391 -8.23766 -6.33759 1.40508 1.41318 1.55365 1.63193 1.98809 2.40590 3.09668 3.46814 3.65437 3.85849 3.99890 4.01791 4.04084 4.12272 4.17790 4.37184 4.53426 4.60546 4.62721 4.70692 4.85814 4.93985 4.97215 5.00075 5.07336 5.14376 5.17218 5.24320 5.27455 5.47115 5.58383 5.64917 5.98838 6.32306 6.43794 6.65513 6.84861 7.23269 7.36635 8.87677 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047873 B = 0.004794 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.738786 B = 5839.334717 C = 6087.270624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.066 3.934 3 H 0.097 0.903 4 N -0.682 5.682 5 C 0.214 3.786 6 C -0.540 4.540 7 H 0.056 0.944 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.970 3.030 11 H -0.269 1.269 12 H -0.274 1.274 13 H -0.276 1.276 14 C 0.524 3.476 15 O -0.575 6.575 16 N -0.613 5.613 17 C 0.094 3.906 18 C -0.130 4.130 19 C -0.117 4.117 20 C -0.126 4.126 21 C 0.104 3.896 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.337 0.663 26 H -0.023 1.023 27 H 0.005 0.995 28 H 0.266 0.734 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 2.908 19.833 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.048 4.048 3 H 0.115 0.885 4 N -0.313 5.313 5 C 0.087 3.913 6 C -0.578 4.578 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.794 3.206 11 H -0.193 1.193 12 H -0.199 1.199 13 H -0.202 1.202 14 C 0.313 3.687 15 O -0.454 6.454 16 N -0.347 5.347 17 C -0.028 4.028 18 C -0.168 4.168 19 C -0.154 4.154 20 C -0.165 4.165 21 C -0.018 4.018 22 H 0.075 0.925 23 H 0.107 0.893 24 H 0.082 0.918 25 H 0.155 0.845 26 H -0.006 1.006 27 H 0.023 0.977 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.470 2.514 19.855 20.312 hybrid contribution -0.503 -0.254 -1.271 1.391 sum -3.972 2.260 18.584 19.138 Atomic orbital electron populations 1.22302 0.93397 1.02761 1.03701 1.21550 0.95528 0.98141 0.89589 0.88466 1.60249 1.57055 1.10050 1.03925 1.19245 0.93762 0.91207 0.87078 1.21536 1.44235 0.97082 0.94931 0.92558 1.25844 0.95432 0.95815 1.02015 1.70059 1.49497 1.10360 1.26968 0.85327 0.78099 0.78694 0.78432 1.19337 1.19915 1.20186 1.20905 0.76455 0.86702 0.84672 1.90598 1.52151 1.17591 1.85044 1.48215 1.62055 1.13553 1.10855 1.22167 0.99595 0.80276 1.00715 1.21993 0.97843 1.02988 0.93951 1.21525 1.01527 0.94570 0.97775 1.21869 0.99117 0.98141 0.97333 1.21694 0.96854 0.98388 0.84833 0.92535 0.89285 0.91790 0.84473 1.00553 0.97741 0.92469 0.90077 0.89535 0.92013 0.88402 0.90091 0.90830 0.92760 0.89060 0.91629 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.94 8.90 71.98 0.64 -4.30 16 2 C 0.07 2.42 2.12 44.17 0.09 2.51 16 3 H 0.10 3.44 6.31 -2.38 -0.02 3.43 16 4 N -0.68 -32.05 5.87 -499.44 -2.93 -34.98 16 5 C 0.21 11.60 5.24 85.55 0.45 12.05 16 6 C -0.54 -31.78 9.32 25.60 0.24 -31.54 16 7 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 8 C 0.01 0.44 5.46 84.66 0.46 0.90 16 9 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 10 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 C 0.52 19.09 6.89 87.66 0.60 19.70 16 15 O -0.58 -25.66 16.05 -3.04 -0.05 -25.71 16 16 N -0.61 -16.58 2.97 -818.05 -2.43 -19.01 16 17 C 0.09 1.84 6.02 86.51 0.52 2.36 16 18 C -0.13 -1.80 6.10 30.82 0.19 -1.61 16 19 C -0.12 -1.45 5.88 30.62 0.18 -1.27 16 20 C -0.13 -2.06 6.08 30.67 0.19 -1.87 16 21 C 0.10 2.42 6.44 86.36 0.56 2.98 16 22 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 23 H 0.09 2.08 7.28 -2.39 -0.02 2.06 16 24 H 0.06 2.05 7.51 -2.39 -0.02 2.03 16 25 H 0.34 15.89 8.44 -89.69 -0.76 15.13 16 26 H -0.02 -1.29 7.47 -2.39 -0.02 -1.31 16 27 H 0.00 0.26 8.06 -2.39 -0.02 0.24 16 28 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.75 4.91 -2.39 -0.01 1.73 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.07 1.87 7.00 -2.39 -0.02 1.85 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -71.33 303.80 1.30 -70.03 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.28 Total: 17.91 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 4.12 Total: -0.08 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -5.07 Total: -109.33 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.05 Total: -25.71 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -71.33 1.30 -70.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156830271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.948 kcal (2) G-P(sol) polarization free energy of solvation -71.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds