Wall clock time and date at job start Mon Mar 30 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46799 * 2 1 4 4 N 1.46901 * 109.47334 * 120.00096 * 2 1 3 5 5 C 1.46902 * 110.99762 * 275.00236 * 4 2 1 6 6 C 1.50699 * 109.46491 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00559 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99851 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99704 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00203 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47180 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47066 * 120.00217 * 10 8 6 13 13 H 1.48504 * 109.47541 * 240.00210 * 10 8 6 14 14 C 1.50697 * 109.47002 * 240.00553 * 2 1 3 15 15 O 1.21280 * 120.00148 * 265.12888 * 14 2 1 16 16 N 1.34776 * 120.00124 * 85.12866 * 14 2 1 17 17 C 1.46925 * 120.62995 * 174.84371 * 16 14 2 18 18 C 1.53196 * 108.77461 * 126.37047 * 17 16 14 19 19 C 1.53040 * 109.30785 * 54.64062 * 18 17 16 20 20 C 1.53039 * 109.53757 * 298.63129 * 19 18 17 21 21 C 1.46920 * 120.63256 * 354.83080 * 16 14 2 22 22 H 1.09000 * 109.47929 * 65.01216 * 1 2 3 23 23 H 1.08999 * 109.46997 * 185.01191 * 1 2 3 24 24 H 1.09001 * 109.47263 * 305.00847 * 1 2 3 25 25 H 1.00896 * 110.99713 * 38.95620 * 4 2 1 26 26 H 1.09001 * 109.47191 * 299.99650 * 5 4 2 27 27 H 1.09001 * 109.47179 * 60.00493 * 5 4 2 28 28 H 0.97005 * 119.99935 * 179.97438 * 9 8 6 29 29 H 1.09006 * 109.58713 * 6.59141 * 17 16 14 30 30 H 1.09001 * 109.59121 * 246.16004 * 17 16 14 31 31 H 1.09005 * 109.49681 * 174.58767 * 18 17 16 32 32 H 1.08994 * 109.49844 * 294.68586 * 18 17 16 33 33 H 1.08997 * 109.46789 * 58.65295 * 19 18 17 34 34 H 1.09001 * 109.46036 * 178.61262 * 19 18 17 35 35 H 1.08998 * 109.50144 * 181.31955 * 20 19 18 36 36 H 1.09002 * 109.49900 * 301.41633 * 20 19 18 37 37 H 1.09002 * 109.59311 * 113.83922 * 21 16 14 38 38 H 1.09006 * 109.58589 * 353.40904 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5874 -0.5219 3.5559 7 1 2.8363 -1.5700 3.4797 8 6 2.7315 0.1351 4.7595 9 7 2.4279 1.4113 4.8525 10 14 3.3567 -0.7878 6.2584 11 1 3.6245 -2.2020 5.8928 12 1 4.6108 -0.1559 6.7413 13 1 2.3324 -0.7392 7.3326 14 6 2.0323 -0.7103 -1.2305 15 8 2.3185 -1.8876 -1.1768 16 7 2.1635 -0.0372 -2.3908 17 6 2.7569 -0.6845 -3.5687 18 6 1.7894 -0.5442 -4.7482 19 6 1.4472 0.9339 -4.9489 20 6 0.7597 1.4751 -3.6933 21 6 1.7155 1.3576 -2.5019 22 1 -0.3635 0.4341 -0.9314 23 1 -0.3633 -1.0237 0.0898 24 1 -0.3634 0.5896 0.8417 25 1 1.4496 -1.4979 1.4099 26 1 2.7588 1.0462 2.1182 27 1 1.0870 0.6162 2.5526 28 1 2.5290 1.8735 5.6993 29 1 2.9263 -1.7407 -3.3588 30 1 3.7033 -0.2020 -3.8130 31 1 2.2580 -0.9351 -5.6515 32 1 0.8777 -1.1037 -4.5394 33 1 2.3622 1.4968 -5.1332 34 1 0.7783 1.0390 -5.8031 35 1 0.4952 2.5215 -3.8457 36 1 -0.1424 0.8966 -3.4945 37 1 2.5769 2.0068 -2.6591 38 1 1.1977 1.6490 -1.5880 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156830413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:26 Heat of formation + Delta-G solvation = -46.339972 kcal Electronic energy + Delta-G solvation = -17678.346339 eV Core-core repulsion = 14941.115629 eV Total energy + Delta-G solvation = -2737.230710 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05386 -37.35063 -35.52937 -33.02432 -32.51361 -31.25164 -29.56161 -26.06885 -25.66053 -23.74937 -22.80902 -21.53342 -20.58415 -18.62281 -17.23652 -16.35064 -15.59156 -15.07493 -14.74212 -14.67086 -14.24374 -13.94677 -13.76873 -13.65208 -13.23791 -12.91708 -12.40884 -12.19496 -11.95161 -11.84776 -11.38468 -11.32083 -11.10067 -11.01653 -10.77146 -10.76591 -10.68543 -10.63501 -9.96572 -9.40564 -9.04373 -8.49898 -8.47176 -7.27987 -6.03281 -4.04327 3.03940 3.14396 3.32906 3.40117 3.46935 4.44748 4.56423 4.65670 4.71756 4.91862 5.02747 5.18239 5.24796 5.33227 5.34908 5.40347 5.45314 5.55657 5.63542 5.68572 5.72778 5.79510 5.85552 5.96944 5.97349 6.11530 6.15970 6.36896 6.66752 7.17448 7.39091 7.58685 7.80477 8.10517 8.38397 8.55738 8.62472 9.05465 9.60653 11.07955 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048260 B = 0.004789 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.054152 B = 5845.846614 C = 6098.303110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.068 3.932 3 H 0.092 0.908 4 N -0.670 5.670 5 C 0.196 3.804 6 C -0.512 4.512 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.899 3.101 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.528 3.472 15 O -0.528 6.528 16 N -0.621 5.621 17 C 0.111 3.889 18 C -0.134 4.134 19 C -0.119 4.119 20 C -0.135 4.135 21 C 0.105 3.895 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.339 0.661 26 H 0.028 0.972 27 H -0.010 1.010 28 H 0.261 0.739 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 2.066 -18.682 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.046 4.046 3 H 0.110 0.890 4 N -0.301 5.301 5 C 0.069 3.931 6 C -0.551 4.551 7 H 0.083 0.917 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.727 3.273 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.316 3.684 15 O -0.402 6.402 16 N -0.357 5.357 17 C -0.012 4.012 18 C -0.172 4.172 19 C -0.157 4.157 20 C -0.174 4.174 21 C -0.019 4.019 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.157 0.843 26 H 0.046 0.954 27 H 0.008 0.992 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.346 1.632 -18.644 19.012 hybrid contribution -0.603 -0.071 0.999 1.169 sum -3.948 1.561 -17.646 18.149 Atomic orbital electron populations 1.22445 0.95759 1.02857 1.02286 1.21459 0.93539 0.98454 0.91166 0.88968 1.60400 1.55859 1.10264 1.03594 1.19630 0.95397 0.91679 0.86361 1.21226 1.43326 0.97111 0.93415 0.91748 1.24972 0.95609 0.94940 0.99007 1.69968 1.49078 1.09007 1.25844 0.86413 0.78386 0.80113 0.82363 1.19571 1.21003 1.21088 1.21027 0.76581 0.87115 0.83713 1.90622 1.49235 1.16022 1.84315 1.48142 1.62992 1.13328 1.11247 1.21502 0.95216 0.99865 0.84605 1.21910 1.00253 0.96858 0.98185 1.21508 1.00640 0.96024 0.97493 1.21928 0.98832 1.01546 0.95049 1.21766 0.98011 0.82593 0.99496 0.92634 0.92055 0.91026 0.84252 0.95440 0.99230 0.92987 0.89107 0.91951 0.91060 0.91640 0.91792 0.91924 0.90762 0.91500 0.91498 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 8.85 37.16 0.33 -2.34 16 2 C 0.07 1.24 2.12 -68.87 -0.15 1.10 16 3 H 0.09 1.62 6.41 -51.93 -0.33 1.29 16 4 N -0.67 -15.28 5.86 -109.22 -0.64 -15.92 16 5 C 0.20 5.14 5.24 -4.98 -0.03 5.11 16 6 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 7 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 10 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.53 9.51 6.90 -10.99 -0.08 9.43 16 15 O -0.53 -11.42 16.04 5.56 0.09 -11.33 16 16 N -0.62 -8.66 2.97 -172.77 -0.51 -9.18 16 17 C 0.11 1.34 6.44 -3.71 -0.02 1.32 16 18 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 19 C -0.12 -0.95 5.88 -26.69 -0.16 -1.11 16 20 C -0.14 -1.16 6.08 -26.61 -0.16 -1.32 16 21 C 0.10 1.13 5.91 -3.71 -0.02 1.11 16 22 H 0.05 0.69 7.16 -51.93 -0.37 0.32 16 23 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 24 H 0.07 1.14 7.58 -51.93 -0.39 0.75 16 25 H 0.34 7.70 8.40 -39.29 -0.33 7.37 16 26 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 27 H -0.01 -0.27 7.53 -51.93 -0.39 -0.66 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.98 4.88 -51.93 -0.25 0.73 16 LS Contribution 303.60 15.07 4.58 4.58 Total: -1.00 -32.64 303.60 -7.84 -40.47 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.20 Total: 2.15 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.86 Total: -1.70 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.42 Total: -51.15 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.64 -7.84 -40.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156830413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.866 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds