Wall clock time and date at job start Mon Mar 30 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46799 * 2 1 4 4 N 1.46901 * 109.47334 * 120.00096 * 2 1 3 5 5 C 1.46902 * 110.99762 * 275.00236 * 4 2 1 6 6 C 1.50699 * 109.46491 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00559 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99851 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99704 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00203 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47180 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47066 * 120.00217 * 10 8 6 13 13 H 1.48504 * 109.47541 * 240.00210 * 10 8 6 14 14 C 1.50697 * 109.47002 * 240.00553 * 2 1 3 15 15 O 1.21280 * 120.00148 * 265.12888 * 14 2 1 16 16 N 1.34776 * 120.00124 * 85.12866 * 14 2 1 17 17 C 1.46925 * 120.62995 * 174.84371 * 16 14 2 18 18 C 1.53196 * 108.77461 * 126.37047 * 17 16 14 19 19 C 1.53040 * 109.30785 * 54.64062 * 18 17 16 20 20 C 1.53039 * 109.53757 * 298.63129 * 19 18 17 21 21 C 1.46920 * 120.63256 * 354.83080 * 16 14 2 22 22 H 1.09000 * 109.47929 * 65.01216 * 1 2 3 23 23 H 1.08999 * 109.46997 * 185.01191 * 1 2 3 24 24 H 1.09001 * 109.47263 * 305.00847 * 1 2 3 25 25 H 1.00896 * 110.99713 * 38.95620 * 4 2 1 26 26 H 1.09001 * 109.47191 * 299.99650 * 5 4 2 27 27 H 1.09001 * 109.47179 * 60.00493 * 5 4 2 28 28 H 0.97005 * 119.99935 * 179.97438 * 9 8 6 29 29 H 1.09006 * 109.58713 * 6.59141 * 17 16 14 30 30 H 1.09001 * 109.59121 * 246.16004 * 17 16 14 31 31 H 1.09005 * 109.49681 * 174.58767 * 18 17 16 32 32 H 1.08994 * 109.49844 * 294.68586 * 18 17 16 33 33 H 1.08997 * 109.46789 * 58.65295 * 19 18 17 34 34 H 1.09001 * 109.46036 * 178.61262 * 19 18 17 35 35 H 1.08998 * 109.50144 * 181.31955 * 20 19 18 36 36 H 1.09002 * 109.49900 * 301.41633 * 20 19 18 37 37 H 1.09002 * 109.59311 * 113.83922 * 21 16 14 38 38 H 1.09006 * 109.58589 * 353.40904 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5874 -0.5219 3.5559 7 1 2.8363 -1.5700 3.4797 8 6 2.7315 0.1351 4.7595 9 7 2.4279 1.4113 4.8525 10 14 3.3567 -0.7878 6.2584 11 1 3.6245 -2.2020 5.8928 12 1 4.6108 -0.1559 6.7413 13 1 2.3324 -0.7392 7.3326 14 6 2.0323 -0.7103 -1.2305 15 8 2.3185 -1.8876 -1.1768 16 7 2.1635 -0.0372 -2.3908 17 6 2.7569 -0.6845 -3.5687 18 6 1.7894 -0.5442 -4.7482 19 6 1.4472 0.9339 -4.9489 20 6 0.7597 1.4751 -3.6933 21 6 1.7155 1.3576 -2.5019 22 1 -0.3635 0.4341 -0.9314 23 1 -0.3633 -1.0237 0.0898 24 1 -0.3634 0.5896 0.8417 25 1 1.4496 -1.4979 1.4099 26 1 2.7588 1.0462 2.1182 27 1 1.0870 0.6162 2.5526 28 1 2.5290 1.8735 5.6993 29 1 2.9263 -1.7407 -3.3588 30 1 3.7033 -0.2020 -3.8130 31 1 2.2580 -0.9351 -5.6515 32 1 0.8777 -1.1037 -4.5394 33 1 2.3622 1.4968 -5.1332 34 1 0.7783 1.0390 -5.8031 35 1 0.4952 2.5215 -3.8457 36 1 -0.1424 0.8966 -3.4945 37 1 2.5769 2.0068 -2.6591 38 1 1.1977 1.6490 -1.5880 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156830413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:26 Heat of formation + Delta-G solvation = -69.062329 kcal Electronic energy + Delta-G solvation = -17679.331655 eV Core-core repulsion = 14941.115629 eV Total energy + Delta-G solvation = -2738.216025 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30404 -38.49360 -37.22386 -34.85451 -33.81575 -32.25867 -31.14275 -27.99282 -26.79772 -24.89594 -24.11178 -23.21150 -21.61755 -19.82742 -18.79389 -18.12871 -17.02687 -16.61910 -16.28027 -15.70094 -15.49585 -15.23272 -15.07492 -14.70733 -14.51241 -14.18913 -14.08924 -13.52595 -13.40151 -13.18243 -13.14698 -12.71247 -12.54646 -12.43615 -12.19135 -12.04815 -11.83357 -11.59141 -11.46438 -11.39346 -10.69546 -10.61650 -9.61383 -9.11120 -8.23775 -6.33735 1.40472 1.41345 1.55390 1.63363 1.98607 2.40609 3.09680 3.46842 3.65218 3.86048 3.99859 4.02413 4.04019 4.12102 4.17892 4.37302 4.53361 4.60186 4.62690 4.70951 4.85942 4.93955 4.97313 5.00477 5.07150 5.14291 5.17166 5.24441 5.27383 5.47101 5.58440 5.65036 5.98865 6.32382 6.43862 6.65718 6.84908 7.23430 7.36650 8.87672 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048260 B = 0.004789 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.054152 B = 5845.846614 C = 6098.303110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.066 3.934 3 H 0.097 0.903 4 N -0.682 5.682 5 C 0.214 3.786 6 C -0.540 4.540 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.970 3.030 11 H -0.269 1.269 12 H -0.276 1.276 13 H -0.274 1.274 14 C 0.524 3.476 15 O -0.575 6.575 16 N -0.613 5.613 17 C 0.104 3.896 18 C -0.127 4.127 19 C -0.116 4.116 20 C -0.130 4.130 21 C 0.094 3.906 22 H 0.088 0.912 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.337 0.663 26 H 0.004 0.996 27 H -0.023 1.023 28 H 0.266 0.734 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 2.831 -19.865 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.048 4.048 3 H 0.115 0.885 4 N -0.313 5.313 5 C 0.087 3.913 6 C -0.578 4.578 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.795 3.205 11 H -0.193 1.193 12 H -0.202 1.202 13 H -0.199 1.199 14 C 0.312 3.688 15 O -0.453 6.453 16 N -0.347 5.347 17 C -0.018 4.018 18 C -0.165 4.165 19 C -0.154 4.154 20 C -0.168 4.168 21 C -0.027 4.027 22 H 0.107 0.893 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.155 0.845 26 H 0.022 0.978 27 H -0.005 1.005 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.647 2.440 -19.883 20.361 hybrid contribution -0.498 -0.250 1.269 1.386 sum -4.145 2.190 -18.614 19.195 Atomic orbital electron populations 1.22315 0.93377 1.02754 1.03734 1.21540 0.95529 0.98124 0.89590 0.88481 1.60241 1.57082 1.10035 1.03917 1.19245 0.93759 0.91204 0.87083 1.21539 1.44223 0.97069 0.94950 0.92559 1.25845 0.95435 0.95816 1.02021 1.70062 1.49494 1.10364 1.26963 0.85326 0.78094 0.78694 0.78430 1.19336 1.20199 1.19901 1.20907 0.76525 0.86611 0.84712 1.90598 1.51689 1.17843 1.85211 1.48207 1.61579 1.14431 1.10472 1.21695 0.96787 0.98441 0.84851 1.21871 0.99005 0.98198 0.97400 1.21524 1.01463 0.94660 0.97741 1.21922 0.97803 1.03063 0.94036 1.22075 0.99264 0.80652 1.00752 0.89319 0.92541 0.91706 0.84468 0.97760 1.00548 0.92474 0.91640 0.90461 0.89058 0.92772 0.90818 0.90093 0.88350 0.92047 0.90095 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 8.85 71.98 0.64 -4.29 16 2 C 0.07 2.43 2.12 44.17 0.09 2.52 16 3 H 0.10 3.44 6.41 -2.39 -0.02 3.43 16 4 N -0.68 -32.06 5.86 -499.46 -2.92 -34.99 16 5 C 0.21 11.61 5.24 85.56 0.45 12.06 16 6 C -0.54 -31.79 9.32 25.60 0.24 -31.56 16 7 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 8 C 0.01 0.43 5.46 84.66 0.46 0.89 16 9 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 10 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 C 0.52 19.08 6.90 87.66 0.60 19.69 16 15 O -0.57 -25.67 16.04 -3.03 -0.05 -25.72 16 16 N -0.61 -16.56 2.97 -818.90 -2.43 -19.00 16 17 C 0.10 2.42 6.44 86.36 0.56 2.98 16 18 C -0.13 -2.06 6.08 30.67 0.19 -1.87 16 19 C -0.12 -1.44 5.88 30.62 0.18 -1.26 16 20 C -0.13 -1.80 6.08 30.67 0.19 -1.62 16 21 C 0.09 1.84 5.91 86.36 0.51 2.35 16 22 H 0.09 2.07 7.16 -2.39 -0.02 2.05 16 23 H 0.06 1.76 8.04 -2.39 -0.02 1.75 16 24 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 25 H 0.34 15.88 8.40 -89.70 -0.75 15.13 16 26 H 0.00 0.25 8.06 -2.39 -0.02 0.23 16 27 H -0.02 -1.29 7.53 -2.39 -0.02 -1.31 16 28 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 29 H 0.07 1.87 7.00 -2.38 -0.02 1.85 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.74 4.88 -2.38 -0.01 1.73 16 Total: -1.00 -71.41 303.60 1.29 -70.12 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.28 Total: 17.85 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 4.10 Total: -0.11 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -5.07 Total: -109.35 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.41 1.29 -70.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156830413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.054 kcal (2) G-P(sol) polarization free energy of solvation -71.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds