Wall clock time and date at job start Mon Mar 30 2020 03:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46868 * 2 1 4 4 C 1.50707 * 109.46890 * 119.99997 * 2 1 3 5 5 H 1.07996 * 119.99904 * 119.99891 * 4 2 1 6 6 C 1.37872 * 119.99578 * 300.00110 * 4 2 1 7 7 N 1.31512 * 120.00465 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99613 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47107 * 90.00131 * 8 6 4 10 10 H 1.48500 * 109.47205 * 209.99742 * 8 6 4 11 11 H 1.48501 * 109.47247 * 329.99599 * 8 6 4 12 12 N 1.46897 * 109.47267 * 239.99803 * 2 1 3 13 13 C 1.46900 * 110.99945 * 85.00246 * 12 2 1 14 14 H 1.08997 * 109.46905 * 324.99616 * 13 12 2 15 15 C 1.52999 * 109.47285 * 84.99890 * 13 12 2 16 16 C 1.50705 * 109.47008 * 205.00127 * 13 12 2 17 17 O 1.21280 * 120.00080 * 333.13866 * 16 13 12 18 18 N 1.34779 * 119.99831 * 153.14316 * 16 13 12 19 19 C 1.47020 * 125.64885 * 4.63250 * 18 16 13 20 20 C 1.54313 * 107.27678 * 180.96912 * 19 18 16 21 21 C 1.55162 * 102.86074 * 22.52730 * 20 19 18 22 22 C 1.47428 * 125.64533 * 184.94305 * 18 16 13 23 23 H 1.08999 * 109.47192 * 300.00343 * 1 2 3 24 24 H 1.09003 * 109.47350 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46945 * 60.00287 * 1 2 3 26 26 H 0.97005 * 120.00198 * 179.97438 * 7 6 4 27 27 H 1.00899 * 111.00328 * 208.95929 * 12 2 1 28 28 H 1.08997 * 109.46942 * 181.50726 * 15 13 12 29 29 H 1.08999 * 109.46867 * 301.51102 * 15 13 12 30 30 H 1.09004 * 109.46723 * 61.50917 * 15 13 12 31 31 H 1.09001 * 109.88198 * 300.51476 * 19 18 16 32 32 H 1.09003 * 109.88148 * 61.67985 * 19 18 16 33 33 H 1.09004 * 110.92465 * 264.11618 * 20 19 18 34 34 H 1.08997 * 110.59517 * 140.78219 * 20 19 18 35 35 H 1.09001 * 111.00310 * 206.23379 * 21 20 19 36 36 H 1.08993 * 111.00858 * 82.37815 * 21 20 19 37 37 H 1.09003 * 110.36409 * 274.67092 * 22 18 16 38 38 H 1.08991 * 110.36678 * 36.88312 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3223 -1.1195 4.0080 9 1 3.6302 -0.5440 4.4119 10 1 1.3442 -0.9489 5.1123 11 1 2.4878 -2.5654 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3468 14 1 1.2577 0.9328 -2.2907 15 6 3.4112 0.9809 -2.3223 16 6 1.9787 -0.5677 -3.6258 17 8 2.3438 -1.7239 -3.6557 18 7 1.4801 0.0104 -4.7366 19 6 1.0923 1.4225 -4.8672 20 6 0.5563 1.6198 -6.3008 21 6 0.1368 0.1840 -6.7133 22 6 1.2273 -0.6700 -6.0198 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 0.7087 1.1614 3.4844 27 1 2.9173 -1.1206 -1.0287 28 1 3.4464 1.6791 -3.1585 29 1 3.4981 1.5311 -1.3854 30 1 4.2354 0.2724 -2.4054 31 1 0.3142 1.6618 -4.1424 32 1 1.9605 2.0617 -4.7069 33 1 1.3379 1.9975 -6.9601 34 1 -0.3050 2.2878 -6.2996 35 1 0.1746 0.0618 -7.7958 36 1 -0.8535 -0.0594 -6.3286 37 1 2.1345 -0.6901 -6.6236 38 1 0.8650 -1.6833 -5.8469 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157062796.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:17 Heat of formation + Delta-G solvation = -38.315940 kcal Electronic energy + Delta-G solvation = -17806.124189 eV Core-core repulsion = 15069.241427 eV Total energy + Delta-G solvation = -2736.882762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.84562 -37.38048 -35.85966 -33.04701 -31.58551 -30.19447 -28.99606 -26.92963 -25.25501 -24.52301 -22.31440 -21.20934 -19.78466 -18.82461 -17.26055 -16.46979 -16.15428 -14.90957 -14.82984 -14.41524 -13.90072 -13.65096 -13.55185 -13.17463 -12.81729 -12.58000 -12.36887 -12.03370 -11.78874 -11.49780 -11.43187 -11.31069 -11.02321 -10.89446 -10.78343 -10.70150 -10.41282 -10.12510 -10.01109 -9.27106 -8.83864 -8.48215 -8.45501 -7.25817 -6.02758 -4.08383 3.05930 3.18181 3.31065 3.37647 3.43195 4.38417 4.42741 4.48276 4.75205 5.08369 5.16679 5.24718 5.26551 5.33187 5.50766 5.56129 5.56353 5.63436 5.69717 5.77236 5.87268 6.00382 6.03972 6.16262 6.43226 6.47347 6.84303 7.12328 7.19911 7.45785 7.72209 7.80513 7.88446 8.25886 8.38585 8.59250 8.66974 9.02012 9.57530 11.03785 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044772 B = 0.005247 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.238642 B = 5335.255401 C = 5503.652629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.669 5.669 13 C 0.075 3.925 14 H 0.090 0.910 15 C -0.172 4.172 16 C 0.541 3.459 17 O -0.528 6.528 18 N -0.628 5.628 19 C 0.099 3.901 20 C -0.131 4.131 21 C -0.134 4.134 22 C 0.106 3.894 23 H 0.082 0.918 24 H 0.032 0.968 25 H 0.001 0.999 26 H 0.261 0.739 27 H 0.341 0.659 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 4.467 -16.424 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.302 5.302 13 C -0.040 4.040 14 H 0.108 0.892 15 C -0.231 4.231 16 C 0.330 3.670 17 O -0.402 6.402 18 N -0.366 5.366 19 C -0.024 4.024 20 C -0.169 4.169 21 C -0.172 4.172 22 C -0.017 4.017 23 H 0.101 0.899 24 H 0.051 0.949 25 H 0.020 0.980 26 H 0.071 0.929 27 H 0.160 0.840 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.955 3.644 -16.345 16.773 hybrid contribution 0.967 0.236 1.050 1.446 sum 0.011 3.881 -15.295 15.779 Atomic orbital electron populations 1.21752 0.97915 0.99506 0.99203 1.19154 0.92528 0.92449 0.85258 0.97810 1.21248 1.31394 1.12559 0.90287 0.92076 1.24898 0.95012 0.95009 0.99016 1.69892 1.36698 1.22957 1.23469 0.86506 0.78419 0.80180 0.82371 1.20758 1.21224 1.19787 1.60463 1.33370 1.31511 1.04807 1.21396 0.98238 0.93855 0.90491 0.89178 1.22385 0.97462 1.00614 1.02631 1.20796 0.75520 0.87300 0.83427 1.90637 1.47638 1.17671 1.84271 1.48618 1.65657 1.10464 1.11841 1.22036 0.99918 0.82920 0.97572 1.22631 1.01361 0.97418 0.95502 1.22789 0.99059 0.94798 1.00561 1.22136 0.97651 0.97300 0.84629 0.89924 0.94861 0.97963 0.92942 0.83987 0.92904 0.90786 0.92213 0.91179 0.91445 0.90653 0.90047 0.90064 0.90546 0.91993 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.17 37.16 0.34 -2.82 16 2 C 0.21 5.43 2.41 -68.86 -0.17 5.27 16 3 H 0.00 0.11 7.11 -51.93 -0.37 -0.25 16 4 C -0.52 -14.34 8.59 -34.44 -0.30 -14.64 16 5 H 0.06 1.70 7.62 -52.49 -0.40 1.30 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.67 -15.30 5.68 -102.17 -0.58 -15.88 16 13 C 0.07 1.40 2.29 -68.86 -0.16 1.25 16 14 H 0.09 1.67 6.17 -51.93 -0.32 1.34 16 15 C -0.17 -2.79 9.13 37.16 0.34 -2.45 16 16 C 0.54 10.10 7.04 -10.98 -0.08 10.02 16 17 O -0.53 -11.77 16.94 5.56 0.09 -11.67 16 18 N -0.63 -9.14 3.33 -170.53 -0.57 -9.71 16 19 C 0.10 1.08 6.29 -3.07 -0.02 1.06 16 20 C -0.13 -1.04 6.95 -24.90 -0.17 -1.21 16 21 C -0.13 -1.14 7.08 -24.58 -0.17 -1.32 16 22 C 0.11 1.27 6.89 -2.53 -0.02 1.25 16 23 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.00 0.03 7.43 -51.92 -0.39 -0.35 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 27 H 0.34 7.90 7.97 -39.29 -0.31 7.59 16 28 H 0.05 0.71 7.31 -51.93 -0.38 0.33 16 29 H 0.07 1.28 7.41 -51.93 -0.38 0.89 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 32 H 0.07 0.68 7.31 -51.93 -0.38 0.30 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 LS Contribution 304.75 15.07 4.59 4.59 Total: -1.00 -31.55 304.75 -7.51 -39.06 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.16 Total: 3.81 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.50 Total: -1.96 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.52 Total: -50.28 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.55 -7.51 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157062796.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.746 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds