Wall clock time and date at job start Mon Mar 30 2020 03:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47546 * 2 1 4 4 C 1.50701 * 109.47101 * 239.99803 * 2 1 3 5 5 H 1.07998 * 120.00363 * 243.22577 * 4 2 1 6 6 C 1.37883 * 119.99530 * 63.22136 * 4 2 1 7 7 N 1.31515 * 119.99855 * 195.65134 * 6 4 2 8 8 Si 1.86798 * 120.00293 * 15.65515 * 6 4 2 9 9 H 1.48501 * 109.47196 * 95.43438 * 8 6 4 10 10 H 1.48501 * 109.47311 * 215.43796 * 8 6 4 11 11 H 1.48502 * 109.46967 * 335.43644 * 8 6 4 12 12 N 1.46896 * 109.46851 * 120.00362 * 2 1 3 13 13 C 1.46910 * 111.00037 * 271.17217 * 12 2 1 14 14 H 1.08999 * 109.46931 * 337.19844 * 13 12 2 15 15 C 1.53001 * 109.46702 * 97.18989 * 13 12 2 16 16 C 1.50697 * 109.47091 * 217.19434 * 13 12 2 17 17 O 1.21281 * 120.00266 * 339.81509 * 16 13 12 18 18 N 1.34775 * 119.99581 * 159.81792 * 16 13 12 19 19 C 1.47021 * 125.65160 * 355.29540 * 18 16 13 20 20 C 1.54317 * 107.27866 * 180.97119 * 19 18 16 21 21 C 1.55154 * 102.86064 * 22.52458 * 20 19 18 22 22 C 1.47422 * 125.64687 * 175.60776 * 18 16 13 23 23 H 1.09000 * 109.46966 * 305.81363 * 1 2 3 24 24 H 1.09001 * 109.47224 * 65.80901 * 1 2 3 25 25 H 1.09001 * 109.47376 * 185.81089 * 1 2 3 26 26 H 0.97000 * 119.99790 * 180.02562 * 7 6 4 27 27 H 1.00901 * 110.99941 * 147.22222 * 12 2 1 28 28 H 1.09008 * 109.46750 * 175.40595 * 15 13 12 29 29 H 1.08990 * 109.47661 * 295.40883 * 15 13 12 30 30 H 1.08998 * 109.46972 * 55.41224 * 15 13 12 31 31 H 1.09003 * 109.87925 * 300.51527 * 19 18 16 32 32 H 1.08996 * 109.88244 * 61.67773 * 19 18 16 33 33 H 1.08998 * 110.92601 * 264.11123 * 20 19 18 34 34 H 1.09002 * 110.58812 * 140.78517 * 20 19 18 35 35 H 1.09000 * 111.00424 * 206.22720 * 21 20 19 36 36 H 1.09009 * 111.00346 * 82.38009 * 21 20 19 37 37 H 1.09002 * 110.36556 * 274.67239 * 22 18 16 38 38 H 1.09005 * 110.36706 * 36.88070 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6096 -1.6179 -1.1323 6 6 1.7549 -0.2019 -2.4816 7 7 1.9134 -0.9554 -3.5478 8 14 1.1538 1.5575 -2.6625 9 1 2.3065 2.4467 -2.9561 10 1 0.1737 1.6339 -3.7755 11 1 0.5035 1.9907 -1.3997 12 7 2.0196 -0.6926 1.1994 13 6 2.1686 0.2420 2.3230 14 1 2.2796 1.2563 1.9397 15 6 0.9287 0.1673 3.2163 16 6 3.3892 -0.1280 3.1257 17 8 3.8541 -1.2451 3.0423 18 7 3.9640 0.7824 3.9363 19 6 3.5666 2.1925 4.0592 20 6 4.5177 2.8494 5.0815 21 6 5.7580 1.9178 5.0475 22 6 5.0997 0.5307 4.8420 23 1 -0.3633 0.6013 0.8334 24 1 -0.3634 0.4211 -0.9374 25 1 -0.3634 -1.0224 0.1040 26 1 1.7186 -0.5975 -4.4280 27 1 2.8868 -1.1727 1.0110 28 1 1.0736 0.7992 4.0926 29 1 0.0581 0.5129 2.6591 30 1 0.7712 -0.8635 3.5337 31 1 3.6579 2.6888 3.0930 32 1 2.5389 2.2582 4.4163 33 1 4.0718 2.8616 6.0761 34 1 4.7838 3.8578 4.7646 35 1 6.3016 1.9564 5.9915 36 1 6.4115 2.1678 4.2116 37 1 4.7454 0.1343 5.7936 38 1 5.8052 -0.1616 4.3826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157062949.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:20 Heat of formation + Delta-G solvation = -30.356200 kcal Electronic energy + Delta-G solvation = -17895.665358 eV Core-core repulsion = 15159.127756 eV Total energy + Delta-G solvation = -2736.537602 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06917 -37.57707 -35.93360 -32.97838 -31.78128 -30.61469 -29.11178 -27.93358 -24.92675 -24.57783 -22.22324 -21.28798 -19.89951 -19.01660 -17.39929 -16.60560 -16.46942 -15.42892 -14.77470 -14.48192 -14.11491 -13.76742 -13.65217 -13.32188 -12.96026 -12.56532 -12.52338 -12.22588 -11.93393 -11.64856 -11.55385 -11.50850 -11.37716 -11.06366 -10.98662 -10.71629 -10.62678 -10.14942 -9.62370 -9.38541 -9.06797 -8.62516 -8.42914 -7.55303 -6.11163 -4.05966 2.84027 3.01536 3.25679 3.35640 3.37203 4.28663 4.37616 4.40221 4.66147 4.90702 4.97569 5.06532 5.16445 5.21833 5.43081 5.47986 5.52412 5.58751 5.63090 5.68274 5.80759 5.91795 5.97422 6.10377 6.30948 6.42607 6.49186 6.71377 6.81256 6.92224 7.44567 7.51370 7.65718 7.94650 8.32643 8.39538 8.63554 8.99522 9.54028 11.02027 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030709 B = 0.006099 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.560567 B = 4589.729574 C = 4699.810257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.186 3.814 3 H -0.002 1.002 4 C -0.529 4.529 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.866 3.134 9 H -0.283 1.283 10 H -0.286 1.286 11 H -0.254 1.254 12 N -0.661 5.661 13 C 0.071 3.929 14 H 0.062 0.938 15 C -0.131 4.131 16 C 0.526 3.474 17 O -0.527 6.527 18 N -0.625 5.625 19 C 0.097 3.903 20 C -0.131 4.131 21 C -0.134 4.134 22 C 0.103 3.897 23 H 0.021 0.979 24 H 0.043 0.957 25 H 0.054 0.946 26 H 0.264 0.736 27 H 0.353 0.647 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 10.258 17.883 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.078 3.922 3 H 0.015 0.985 4 C -0.566 4.566 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.526 5.526 8 Si 0.693 3.307 9 H -0.209 1.209 10 H -0.212 1.212 11 H -0.178 1.178 12 N -0.297 5.297 13 C -0.042 4.042 14 H 0.080 0.920 15 C -0.190 4.190 16 C 0.314 3.686 17 O -0.402 6.402 18 N -0.361 5.361 19 C -0.026 4.026 20 C -0.169 4.169 21 C -0.172 4.172 22 C -0.019 4.019 23 H 0.040 0.960 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.175 0.825 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.833 9.337 17.748 20.254 hybrid contribution 0.471 1.510 -0.581 1.685 sum 3.304 10.847 17.168 20.574 Atomic orbital electron populations 1.22136 0.98062 1.00506 0.98198 1.19611 0.92395 0.92205 0.88036 0.98497 1.21100 1.35331 1.11480 0.88724 0.90417 1.24889 0.94636 0.97329 0.95730 1.69992 1.48629 1.35388 0.98595 0.87156 0.78837 0.86300 0.78435 1.20927 1.21160 1.17793 1.60649 1.36443 1.27058 1.05504 1.21637 0.91823 0.97000 0.93773 0.92000 1.21790 0.96966 1.02460 0.97734 1.20957 0.84773 0.84011 0.78819 1.90691 1.63917 1.20891 1.64655 1.48576 1.34429 1.10575 1.42559 1.22080 0.99021 0.81643 0.99837 1.22634 0.95640 0.99266 0.99366 1.22790 0.97300 0.94369 1.02763 1.22187 0.88627 0.97475 0.93631 0.95969 0.93807 0.92704 0.92651 0.82519 0.93416 0.91092 0.91619 0.91233 0.91124 0.90513 0.89997 0.89914 0.90537 0.91703 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.52 37.16 0.32 -2.63 16 2 C 0.19 4.51 2.15 -68.87 -0.15 4.36 16 3 H 0.00 -0.06 5.95 -51.93 -0.31 -0.37 16 4 C -0.53 -15.15 9.02 -34.44 -0.31 -15.46 16 5 H 0.08 2.45 7.83 -52.49 -0.41 2.04 16 6 C 0.08 2.23 5.32 -17.82 -0.09 2.14 16 7 N -0.89 -27.33 13.96 55.43 0.77 -26.56 16 8 Si 0.87 21.19 25.72 -169.99 -4.37 16.82 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.25 -5.81 5.48 56.52 0.31 -5.50 16 12 N -0.66 -14.67 6.07 -102.17 -0.62 -15.29 16 13 C 0.07 1.28 2.53 -68.86 -0.17 1.10 16 14 H 0.06 1.07 6.49 -51.93 -0.34 0.74 16 15 C -0.13 -1.99 9.37 37.16 0.35 -1.64 16 16 C 0.53 9.33 6.96 -10.99 -0.08 9.26 16 17 O -0.53 -11.27 16.05 5.56 0.09 -11.18 16 18 N -0.62 -8.54 3.33 -170.53 -0.57 -9.10 16 19 C 0.10 0.99 6.21 -3.07 -0.02 0.97 16 20 C -0.13 -0.95 6.95 -24.90 -0.17 -1.12 16 21 C -0.13 -1.06 7.08 -24.58 -0.17 -1.23 16 22 C 0.10 1.16 6.93 -2.53 -0.02 1.15 16 23 H 0.02 0.42 6.22 -51.93 -0.32 0.10 16 24 H 0.04 1.01 4.86 -51.93 -0.25 0.75 16 25 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.35 8.49 6.83 -39.29 -0.27 8.22 16 28 H 0.05 0.58 6.98 -51.92 -0.36 0.22 16 29 H 0.07 1.08 6.14 -51.93 -0.32 0.76 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.72 7.94 -51.93 -0.41 0.31 16 32 H 0.07 0.65 6.99 -51.93 -0.36 0.29 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.99 7.99 -51.93 -0.42 0.57 16 LS Contribution 295.39 15.07 4.45 4.45 Total: -1.00 -32.81 295.39 -6.73 -39.54 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.96 Total: 4.44 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.52 Total: -3.12 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.41 Total: -50.95 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.37 Total: 16.82 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.81 -6.73 -39.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157062949.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.184 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds