Wall clock time and date at job start Mon Mar 30 2020 03:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47090 * 2 1 4 4 N 1.46900 * 109.47284 * 120.00158 * 2 1 3 5 5 C 1.46900 * 110.99727 * 275.86990 * 4 2 1 6 6 H 1.08997 * 109.47737 * 35.51410 * 5 4 2 7 7 C 1.53004 * 109.46758 * 155.51874 * 5 4 2 8 8 C 1.50697 * 109.46763 * 275.51245 * 5 4 2 9 9 H 1.08000 * 120.00575 * 0.02562 * 8 5 4 10 10 C 1.37885 * 119.99976 * 180.02562 * 8 5 4 11 11 N 1.31517 * 119.99457 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00265 * 179.97438 * 10 8 5 13 13 H 1.48503 * 109.46818 * 60.00138 * 12 10 8 14 14 H 1.48500 * 109.47233 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47188 * 300.00417 * 12 10 8 16 16 C 1.50704 * 109.46806 * 240.00322 * 2 1 3 17 17 O 1.21279 * 119.99790 * 260.97097 * 16 2 1 18 18 N 1.34774 * 120.00027 * 80.70519 * 16 2 1 19 19 C 1.47027 * 125.65017 * 4.43313 * 18 16 2 20 20 C 1.54314 * 107.27569 * 180.97529 * 19 18 16 21 21 C 1.55146 * 102.86322 * 22.52529 * 20 19 18 22 22 C 1.47420 * 125.64918 * 184.75189 * 18 16 2 23 23 H 1.08996 * 109.47459 * 186.38814 * 1 2 3 24 24 H 1.09004 * 109.47074 * 306.38376 * 1 2 3 25 25 H 1.09001 * 109.47288 * 66.38100 * 1 2 3 26 26 H 1.00892 * 110.99945 * 151.91317 * 4 2 1 27 27 H 1.09001 * 109.46772 * 185.63992 * 7 5 4 28 28 H 1.09005 * 109.47163 * 305.63918 * 7 5 4 29 29 H 1.09000 * 109.47371 * 65.63877 * 7 5 4 30 30 H 0.97008 * 119.99383 * 179.97438 * 11 10 8 31 31 H 1.09002 * 109.88143 * 300.51950 * 19 18 16 32 32 H 1.09000 * 109.87878 * 61.68153 * 19 18 16 33 33 H 1.09003 * 110.92097 * 264.10969 * 20 19 18 34 34 H 1.08997 * 110.58880 * 140.79412 * 20 19 18 35 35 H 1.09006 * 111.00837 * 206.22745 * 21 20 19 36 36 H 1.09007 * 111.03788 * 82.39485 * 21 20 19 37 37 H 1.09002 * 110.36642 * 274.66905 * 22 18 16 38 38 H 1.09002 * 110.37193 * 36.87841 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0629 0.2174 2.3518 6 1 1.2246 0.9119 2.2982 7 6 1.9713 -0.5939 3.6458 8 6 3.3569 0.9896 2.3337 9 1 4.0751 0.8217 1.5449 10 6 3.6239 1.9108 3.3244 11 7 2.7495 2.1150 4.2854 12 14 5.2282 2.8675 3.3025 13 1 5.3175 3.6552 2.0467 14 1 5.2724 3.7866 4.4681 15 1 6.3701 1.9210 3.3754 16 6 2.0323 -0.7104 -1.2306 17 8 2.3898 -1.8671 -1.1595 18 7 2.0791 -0.0619 -2.4111 19 6 1.7603 1.3578 -2.6221 20 6 1.9292 1.6464 -4.1286 21 6 1.7760 0.2414 -4.7687 22 6 2.4521 -0.6601 -3.7058 23 1 -0.3634 -1.0212 0.1143 24 1 -0.3633 0.6096 0.8274 25 1 -0.3634 0.4117 -0.9416 26 1 2.9237 -1.1085 1.0330 27 1 1.9024 0.0848 4.4960 28 1 1.0855 -1.2285 3.6148 29 1 2.8605 -1.2159 3.7485 30 1 2.9376 2.7628 4.9825 31 1 0.7327 1.5562 -2.3177 32 1 2.4461 1.9810 -2.0481 33 1 2.9158 2.0599 -4.3376 34 1 1.1461 2.3180 -4.4804 35 1 2.3038 0.1861 -5.7208 36 1 0.7249 -0.0202 -4.8914 37 1 3.5348 -0.6480 -3.8314 38 1 2.0744 -1.6802 -3.7754 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157063064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:22 Heat of formation + Delta-G solvation = -60.801380 kcal Electronic energy + Delta-G solvation = -17942.774200 eV Core-core repulsion = 15204.916396 eV Total energy + Delta-G solvation = -2737.857804 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21587 -38.63464 -37.50905 -34.85326 -32.97996 -31.83793 -29.93178 -28.89488 -27.17831 -25.72813 -23.40876 -22.11139 -21.71346 -20.11448 -18.76677 -18.10138 -17.42868 -16.89282 -16.71581 -15.96218 -15.38381 -14.88096 -14.55454 -14.30461 -14.17558 -14.11257 -13.55913 -13.34255 -13.27523 -13.01621 -12.92972 -12.80538 -12.58010 -12.27181 -12.19156 -12.12753 -12.01784 -11.94282 -11.57309 -11.16844 -10.71418 -10.53652 -9.69592 -9.20155 -8.10455 -6.31644 1.36954 1.39289 1.46566 1.53813 1.94534 2.38171 3.11375 3.42673 3.55333 3.68728 3.89676 4.05668 4.24242 4.28445 4.39881 4.47586 4.63989 4.73901 4.84359 4.87654 4.91072 4.95909 5.01364 5.11283 5.13301 5.19190 5.28835 5.30605 5.39955 5.45940 5.62917 5.98740 6.10241 6.26392 6.41505 6.66490 6.89775 7.11438 7.39630 8.88381 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025216 B = 0.006801 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.148544 B = 4116.023603 C = 4679.744163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.077 3.923 3 H 0.057 0.943 4 N -0.674 5.674 5 C 0.215 3.785 6 H 0.017 0.983 7 C -0.113 4.113 8 C -0.565 4.565 9 H 0.043 0.957 10 C 0.026 3.974 11 N -0.908 5.908 12 Si 0.951 3.049 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.278 1.278 16 C 0.528 3.472 17 O -0.574 6.574 18 N -0.621 5.621 19 C 0.085 3.915 20 C -0.121 4.121 21 C -0.119 4.119 22 C 0.094 3.906 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.328 0.672 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.019 0.981 30 H 0.265 0.735 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 1.986 -17.499 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.036 4.036 3 H 0.075 0.925 4 N -0.305 5.305 5 C 0.106 3.894 6 H 0.035 0.965 7 C -0.171 4.171 8 C -0.604 4.604 9 H 0.061 0.939 10 C -0.175 4.175 11 N -0.546 5.546 12 Si 0.776 3.224 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.203 1.203 16 C 0.317 3.683 17 O -0.454 6.454 18 N -0.355 5.355 19 C -0.037 4.037 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.028 4.028 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.145 0.855 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.172 1.199 -17.059 17.603 hybrid contribution 1.802 0.918 0.403 2.063 sum -2.370 2.117 -16.656 16.956 Atomic orbital electron populations 1.21621 0.91251 1.02463 1.02469 1.21391 0.98154 0.96258 0.87817 0.92479 1.60884 1.32326 1.33751 1.03513 1.19032 0.94428 0.88820 0.87081 0.96484 1.21523 0.97460 0.98255 0.99903 1.22008 1.04824 1.23075 1.10454 0.93907 1.25627 0.99610 0.97426 0.94858 1.69995 1.36289 1.34952 1.13378 0.85737 0.80255 0.78563 0.77837 1.19567 1.20379 1.20326 1.20693 0.76957 0.86202 0.84477 1.90628 1.50158 1.18978 1.85590 1.48632 1.67318 1.12344 1.07234 1.22391 1.01634 0.80199 0.99468 1.22657 1.04374 0.97820 0.91038 1.22773 1.01883 0.93433 0.97570 1.22435 0.99858 0.98287 0.82259 0.92524 0.92058 0.90100 0.85460 0.92056 0.95161 0.96139 0.92601 0.90051 0.92146 0.89811 0.87375 0.87377 0.89840 0.91808 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 9.34 71.98 0.67 -3.33 16 2 C 0.08 3.07 2.30 44.17 0.10 3.17 16 3 H 0.06 2.38 6.97 -2.39 -0.02 2.36 16 4 N -0.67 -31.65 5.82 -477.16 -2.78 -34.43 16 5 C 0.21 11.16 2.40 44.17 0.11 11.27 16 6 H 0.02 0.95 7.11 -2.39 -0.02 0.93 16 7 C -0.11 -5.80 9.21 71.98 0.66 -5.14 16 8 C -0.56 -31.31 8.23 25.60 0.21 -31.10 16 9 H 0.04 2.40 7.75 -2.91 -0.02 2.37 16 10 C 0.03 1.41 5.30 84.66 0.45 1.86 16 11 N -0.91 -51.50 11.38 21.45 0.24 -51.26 16 12 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 16 C 0.53 20.18 6.92 87.66 0.61 20.79 16 17 O -0.57 -26.07 16.40 -3.03 -0.05 -26.12 16 18 N -0.62 -18.01 3.33 -811.81 -2.70 -20.71 16 19 C 0.09 1.85 6.18 86.72 0.54 2.38 16 20 C -0.12 -1.62 6.95 31.78 0.22 -1.40 16 21 C -0.12 -1.60 7.08 31.98 0.23 -1.37 16 22 C 0.09 2.15 6.89 86.85 0.60 2.75 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 2.12 7.46 -2.38 -0.02 2.10 16 25 H 0.08 2.12 7.00 -2.39 -0.02 2.10 16 26 H 0.33 16.42 7.58 -89.70 -0.68 15.74 16 27 H 0.06 3.35 6.24 -2.39 -0.01 3.34 16 28 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 31 H 0.08 1.60 7.01 -2.39 -0.02 1.58 16 32 H 0.06 1.46 8.02 -2.39 -0.02 1.44 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 Total: -1.00 -66.78 305.25 1.49 -65.30 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.35 Total: 22.01 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 4.39 Total: -0.13 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -5.24 Total: -106.40 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.12 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -66.78 1.49 -65.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157063064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.494 kcal (2) G-P(sol) polarization free energy of solvation -66.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds