Wall clock time and date at job start Mon Mar 30 2020 03:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47204 * 2 1 4 4 C 1.50703 * 109.47054 * 240.00701 * 2 1 3 5 5 H 1.07997 * 119.99952 * 245.34739 * 4 2 1 6 6 C 1.37872 * 120.00151 * 65.34636 * 4 2 1 7 7 N 1.31517 * 120.00231 * 6.32371 * 6 4 2 8 8 Si 1.86807 * 120.00130 * 186.32449 * 6 4 2 9 9 H 1.48494 * 109.47079 * 94.97699 * 8 6 4 10 10 H 1.48500 * 109.47194 * 214.98423 * 8 6 4 11 11 H 1.48501 * 109.46650 * 334.98128 * 8 6 4 12 12 N 1.46893 * 109.47635 * 120.00200 * 2 1 3 13 13 C 1.46900 * 111.00299 * 275.00494 * 12 2 1 14 14 H 1.09002 * 109.46894 * 34.99242 * 13 12 2 15 15 C 1.52999 * 109.46719 * 274.99887 * 13 12 2 16 16 C 1.50695 * 109.47280 * 154.99738 * 13 12 2 17 17 O 1.21275 * 120.00197 * 23.73507 * 16 13 12 18 18 N 1.34777 * 119.99836 * 203.46658 * 16 13 12 19 19 C 1.47020 * 125.65136 * 174.81785 * 18 16 13 20 20 C 1.54307 * 107.28105 * 180.96220 * 19 18 16 21 21 C 1.55160 * 102.86198 * 22.52442 * 20 19 18 22 22 C 1.47430 * 125.65027 * 355.11565 * 18 16 13 23 23 H 1.09001 * 109.47233 * 63.37550 * 1 2 3 24 24 H 1.08997 * 109.46944 * 183.37618 * 1 2 3 25 25 H 1.09000 * 109.46975 * 303.37981 * 1 2 3 26 26 H 0.97000 * 119.99819 * 179.97438 * 7 6 4 27 27 H 1.00905 * 110.99526 * 38.95288 * 12 2 1 28 28 H 1.09006 * 109.46929 * 304.41292 * 15 13 12 29 29 H 1.08996 * 109.47484 * 64.41248 * 15 13 12 30 30 H 1.08998 * 109.46874 * 184.41923 * 15 13 12 31 31 H 1.09006 * 109.88290 * 300.50905 * 19 18 16 32 32 H 1.09006 * 109.88426 * 61.67011 * 19 18 16 33 33 H 1.08998 * 110.92994 * 264.10940 * 20 19 18 34 34 H 1.09000 * 110.59281 * 140.78012 * 20 19 18 35 35 H 1.09001 * 111.00557 * 206.22733 * 21 20 19 36 36 H 1.09001 * 111.00716 * 82.38055 * 21 20 19 37 37 H 1.09005 * 110.36716 * 274.68448 * 22 18 16 38 38 H 1.09005 * 110.36297 * 36.88872 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5801 -1.6360 -1.1339 6 6 1.7925 -0.1783 -2.4797 7 7 1.2363 1.0080 -2.5936 8 14 2.2577 -1.1426 -4.0106 9 1 1.0767 -1.9007 -4.4960 10 1 2.7123 -0.2040 -5.0678 11 1 3.3541 -2.0897 -3.6848 12 7 2.0198 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 1.2576 0.9328 2.2907 15 6 3.4111 0.9808 2.3223 16 6 1.9787 -0.5678 3.6258 17 8 2.2907 -1.7397 3.6415 18 7 1.5444 0.0290 4.7534 19 6 1.2935 -0.6430 6.0367 20 6 0.7878 0.4292 7.0245 21 6 0.2363 1.5329 6.0837 22 6 1.2362 1.4630 4.9027 23 1 -0.3634 0.4605 -0.9187 24 1 -0.3633 -1.0259 0.0605 25 1 -0.3633 0.5654 0.8581 26 1 1.0680 1.3823 -3.4725 27 1 1.4496 -1.4980 1.4099 28 1 4.2358 0.2683 2.2993 29 1 3.4523 1.6130 1.4354 30 1 3.4919 1.6012 3.2148 31 1 0.5371 -1.4174 5.9080 32 1 2.2175 -1.0833 6.4115 33 1 1.6058 0.8146 7.6331 34 1 -0.0060 0.0268 7.6538 35 1 0.2690 2.5097 6.5661 36 1 -0.7752 1.2956 5.7539 37 1 2.1412 2.0231 5.1381 38 1 0.7780 1.8493 3.9921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157063208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:25 Heat of formation + Delta-G solvation = -59.285904 kcal Electronic energy + Delta-G solvation = -17808.513828 eV Core-core repulsion = 15070.721740 eV Total energy + Delta-G solvation = -2737.792088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25309 -38.66997 -37.57326 -34.85904 -33.00216 -31.84483 -29.93484 -28.79530 -27.23295 -25.78648 -23.59609 -22.15136 -21.63919 -20.23173 -18.76410 -18.02816 -17.42276 -16.76688 -16.61737 -16.06182 -15.38235 -14.81491 -14.51881 -14.47587 -14.20582 -14.03158 -13.75838 -13.34480 -13.27115 -13.08328 -12.95008 -12.79900 -12.63559 -12.37203 -12.22683 -12.18485 -12.05704 -11.87854 -11.57841 -11.10533 -10.73687 -10.47306 -9.70839 -9.07677 -8.12481 -6.19629 1.42388 1.43361 1.51027 1.55191 1.91148 2.45074 3.17867 3.41780 3.50233 3.67313 3.88260 4.03097 4.13035 4.28671 4.33537 4.47871 4.65019 4.65865 4.73606 4.80934 4.83518 4.87608 4.93830 5.01304 5.05546 5.11255 5.25873 5.30502 5.34898 5.39992 5.62536 5.75041 6.19248 6.38095 6.60829 6.69183 6.91650 7.10080 7.48551 8.95578 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046078 B = 0.005228 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.517224 B = 5354.618259 C = 5532.193019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.217 3.783 3 H 0.021 0.979 4 C -0.517 4.517 5 H 0.048 0.952 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.675 5.675 13 C 0.075 3.925 14 H 0.064 0.936 15 C -0.122 4.122 16 C 0.527 3.473 17 O -0.574 6.574 18 N -0.621 5.621 19 C 0.096 3.904 20 C -0.118 4.118 21 C -0.125 4.125 22 C 0.084 3.916 23 H 0.052 0.948 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.262 0.738 27 H 0.329 0.671 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 5.005 18.842 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.109 3.891 3 H 0.039 0.961 4 C -0.555 4.555 5 H 0.066 0.934 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.307 5.307 13 C -0.038 4.038 14 H 0.082 0.918 15 C -0.180 4.180 16 C 0.315 3.685 17 O -0.453 6.453 18 N -0.355 5.355 19 C -0.027 4.027 20 C -0.156 4.156 21 C -0.163 4.163 22 C -0.038 4.038 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.147 0.853 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.888 4.560 18.500 19.147 hybrid contribution -0.731 -0.538 -1.032 1.375 sum -2.619 4.022 17.468 18.115 Atomic orbital electron populations 1.22222 1.00078 0.98841 1.00026 1.19043 0.89751 0.93543 0.86738 0.96087 1.21366 1.34673 1.08203 0.91282 0.93404 1.25624 0.95470 0.95682 1.01581 1.70034 1.44985 1.16623 1.24344 0.85571 0.78413 0.78577 0.79219 1.20167 1.20603 1.19899 1.60682 1.58629 1.08698 1.02726 1.21491 1.00061 0.94428 0.87837 0.91794 1.21624 0.94727 0.99229 1.02431 1.20660 0.75893 0.86950 0.84964 1.90652 1.50323 1.18558 1.85718 1.48659 1.65427 1.11190 1.10247 1.22122 1.00378 0.96880 0.83272 1.22642 1.02125 0.94443 0.96395 1.22810 0.98062 1.00974 0.94486 1.22739 1.00264 0.80048 1.00706 0.92857 0.95015 0.94995 0.92858 0.85304 0.93220 0.92343 0.89776 0.92674 0.92291 0.88908 0.88227 0.86859 0.90750 0.89362 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.31 9.02 71.98 0.65 -6.66 16 2 C 0.22 11.23 2.25 44.17 0.10 11.33 16 3 H 0.02 1.18 7.12 -2.39 -0.02 1.16 16 4 C -0.52 -29.73 8.77 25.60 0.22 -29.51 16 5 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 6 C 0.02 0.85 5.23 84.65 0.44 1.29 16 7 N -0.92 -53.16 12.00 21.45 0.26 -52.91 16 8 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 12 N -0.68 -31.49 5.82 -477.17 -2.78 -34.27 16 13 C 0.07 2.81 2.26 44.17 0.10 2.91 16 14 H 0.06 2.27 5.83 -2.39 -0.01 2.26 16 15 C -0.12 -4.15 9.36 71.98 0.67 -3.47 16 16 C 0.53 19.03 6.88 87.66 0.60 19.63 16 17 O -0.57 -25.43 16.51 -3.01 -0.05 -25.48 16 18 N -0.62 -16.47 3.33 -811.81 -2.70 -19.17 16 19 C 0.10 2.06 6.87 86.72 0.60 2.66 16 20 C -0.12 -1.40 6.95 31.78 0.22 -1.18 16 21 C -0.13 -1.47 7.08 31.99 0.23 -1.24 16 22 C 0.08 1.52 6.39 86.85 0.55 2.07 16 23 H 0.05 2.80 6.69 -2.39 -0.02 2.78 16 24 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 25 H 0.03 1.32 7.47 -2.39 -0.02 1.31 16 26 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 27 H 0.33 15.69 7.61 -89.69 -0.68 15.01 16 28 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.06 2.13 7.48 -2.39 -0.02 2.11 16 30 H 0.08 2.16 7.74 -2.39 -0.02 2.14 16 31 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.31 8.10 -2.38 -0.02 1.29 16 38 H 0.08 1.46 6.82 -2.38 -0.02 1.44 16 Total: -1.00 -69.50 305.65 1.50 -68.00 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.35 Total: 18.95 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 4.39 Total: -2.16 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -5.22 Total: -106.34 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.50 1.50 -68.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157063208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.717 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds