Wall clock time and date at job start Mon Mar 30 2020 03:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47592 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00356 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99989 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00117 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46744 * 90.00434 * 12 10 8 14 14 H 1.48500 * 109.47304 * 210.00023 * 12 10 8 15 15 H 1.48498 * 109.47341 * 330.00626 * 12 10 8 16 16 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 17 17 O 1.21284 * 120.00581 * 240.00048 * 16 2 1 18 18 N 1.34784 * 119.99839 * 60.00251 * 16 2 1 19 19 C 1.46494 * 119.99995 * 179.97438 * 18 16 2 20 20 C 1.53001 * 117.50162 * 223.74275 * 19 18 16 21 21 C 1.53001 * 117.49973 * 155.08556 * 19 18 16 22 22 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 24 24 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 25 25 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 26 26 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 27 27 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 29 29 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 30 30 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 31 31 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 32 32 H 0.96996 * 119.99885 * 179.97438 * 11 10 8 33 33 H 0.96999 * 119.99358 * 359.97438 * 18 16 2 34 34 H 1.09003 * 115.55446 * 9.42254 * 19 18 16 35 35 H 1.09005 * 117.49423 * 0.02562 * 20 19 18 36 36 H 1.08993 * 117.49878 * 145.01836 * 20 19 18 37 37 H 1.09003 * 117.50461 * 214.98503 * 21 19 18 38 38 H 1.09005 * 117.49906 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6610 0.4201 4.7694 8 6 3.1653 -0.3244 5.9787 9 1 3.4143 -1.3726 5.9025 10 6 3.3099 0.3327 7.1821 11 7 3.0072 1.6092 7.2748 12 14 3.9343 -0.5903 8.6813 13 1 5.4155 -0.4991 8.7372 14 1 3.3548 0.0104 9.9095 15 1 3.5294 -2.0160 8.5890 16 6 2.0323 -0.7105 -1.2304 17 8 2.7296 -1.6966 -1.1191 18 7 1.7067 -0.2500 -2.4546 19 6 2.1955 -0.9403 -3.6506 20 6 2.7348 -0.0777 -4.7934 21 6 1.3841 -0.7830 -4.9382 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.4494 -1.4979 1.4101 26 1 2.7588 1.0462 2.1182 27 1 1.0870 0.6163 2.5526 28 1 1.9183 -1.3565 3.8030 29 1 3.5903 -0.9272 3.3692 30 1 3.3380 1.2432 4.5406 31 1 1.6659 0.8145 4.9750 32 1 3.1085 2.0714 8.1216 33 1 1.1488 0.5385 -2.5435 34 1 2.6784 -1.9015 -3.4745 35 1 2.7264 1.0035 -4.6550 36 1 3.5724 -0.4714 -5.3691 37 1 1.3336 -1.6406 -5.6093 38 1 0.4864 -0.1663 -4.8953 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157519425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:31 Heat of formation + Delta-G solvation = -26.677431 kcal Electronic energy + Delta-G solvation = -16588.168303 eV Core-core repulsion = 13851.790224 eV Total energy + Delta-G solvation = -2736.378078 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.00086 -37.54354 -36.30738 -33.86660 -32.97354 -31.66953 -29.18252 -26.01021 -24.58043 -22.74486 -22.52273 -21.62068 -20.58156 -20.01622 -17.22496 -16.80674 -16.22642 -15.47554 -15.12312 -14.69186 -14.53456 -14.36069 -14.08970 -13.37403 -12.98374 -12.79129 -12.50377 -12.19886 -11.96229 -11.78058 -11.68475 -11.43202 -11.35298 -10.85233 -10.81874 -10.56125 -10.50686 -9.77871 -9.66021 -9.30210 -9.02538 -8.94648 -8.31091 -8.14656 -5.96622 -3.98253 2.57899 2.84362 3.35378 3.41121 3.45302 3.60451 4.35088 4.44729 4.51440 4.60604 4.61330 4.65952 4.90508 4.99453 5.25521 5.39312 5.40082 5.45909 5.51145 5.64587 5.70792 5.79993 5.80898 5.96523 6.31042 6.32576 6.74212 6.75762 7.16036 7.21332 7.41237 7.61016 7.72133 7.86854 8.04129 8.22063 8.47868 9.08994 9.65657 11.14928 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.063011 B = 0.003266 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.262966 B = 8571.728144 C = 8719.958290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.068 3.932 3 H 0.104 0.896 4 N -0.668 5.668 5 C 0.061 3.939 6 C -0.108 4.108 7 C 0.023 3.977 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.521 3.479 17 O -0.513 6.513 18 N -0.710 5.710 19 C 0.084 3.916 20 C -0.196 4.196 21 C -0.192 4.192 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.346 0.654 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.014 0.986 32 H 0.260 0.740 33 H 0.399 0.601 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 -0.904 -22.904 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.046 4.046 3 H 0.121 0.879 4 N -0.299 5.299 5 C -0.067 4.067 6 C -0.146 4.146 7 C -0.015 4.015 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C 0.307 3.693 17 O -0.386 6.386 18 N -0.363 5.363 19 C -0.023 4.023 20 C -0.235 4.235 21 C -0.230 4.230 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.165 0.835 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.233 0.767 34 H 0.155 0.845 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.279 -1.425 -22.795 23.442 hybrid contribution -0.916 0.219 0.926 1.320 sum -6.195 -1.207 -21.869 22.762 Atomic orbital electron populations 1.22474 0.95225 1.03031 1.03128 1.21449 0.93826 0.98831 0.90492 0.87855 1.60212 1.57089 1.09718 1.02907 1.22201 0.99181 0.95321 0.90006 1.21626 1.00367 0.98950 0.93620 1.19062 0.96999 0.94315 0.91118 1.21273 1.43373 0.96446 0.94515 0.92623 1.25030 0.95651 0.94898 0.98978 1.69968 1.49056 1.08998 1.25723 0.86589 0.79030 0.80019 0.82347 1.20653 1.21286 1.19867 1.20820 0.79841 0.84722 0.83907 1.90698 1.36008 1.25605 1.86261 1.45465 1.54061 1.31955 1.04773 1.21558 1.01689 0.98438 0.80569 1.23433 0.97522 0.99603 1.02893 1.23379 0.95508 1.03754 1.00404 0.91802 0.90961 0.91923 0.83549 0.91385 0.95488 0.93525 0.92362 0.96573 0.96803 0.93073 0.76687 0.84548 0.88523 0.88056 0.87984 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.06 37.15 0.34 -1.33 16 2 C 0.07 0.82 3.00 -68.87 -0.21 0.62 16 3 H 0.10 1.15 7.80 -51.93 -0.40 0.74 16 4 N -0.67 -10.41 5.74 -107.96 -0.62 -11.03 16 5 C 0.06 1.05 5.48 -3.83 -0.02 1.03 16 6 C -0.11 -2.29 5.41 -26.74 -0.14 -2.44 16 7 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 8 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 9 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 12 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.52 6.81 7.22 -10.98 -0.08 6.73 16 17 O -0.51 -9.01 16.00 5.55 0.09 -8.92 16 18 N -0.71 -6.64 5.46 -53.81 -0.29 -6.94 16 19 C 0.08 0.75 6.43 -67.93 -0.44 0.31 16 20 C -0.20 -1.36 10.46 -26.70 -0.28 -1.63 16 21 C -0.19 -1.21 10.46 -26.70 -0.28 -1.49 16 22 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 23 H 0.07 0.71 7.45 -51.93 -0.39 0.32 16 24 H 0.06 0.43 7.56 -51.93 -0.39 0.03 16 25 H 0.35 5.23 8.47 -39.29 -0.33 4.90 16 26 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 27 H 0.03 0.44 7.44 -51.93 -0.39 0.06 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.40 2.59 8.24 -40.82 -0.34 2.26 16 34 H 0.14 1.46 7.40 -51.93 -0.38 1.08 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 320.14 15.07 4.82 4.82 Total: -1.00 -33.46 320.14 -8.33 -41.80 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.39 Total: 1.37 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.66 Total: -11.56 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.18 Total: -44.58 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.46 -8.33 -41.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157519425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.118 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds