Wall clock time and date at job start Mon Mar 30 2020 03:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47592 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00356 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99989 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00117 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46744 * 90.00434 * 12 10 8 14 14 H 1.48500 * 109.47304 * 210.00023 * 12 10 8 15 15 H 1.48498 * 109.47341 * 330.00626 * 12 10 8 16 16 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 17 17 O 1.21284 * 120.00581 * 240.00048 * 16 2 1 18 18 N 1.34784 * 119.99839 * 60.00251 * 16 2 1 19 19 C 1.46494 * 119.99995 * 179.97438 * 18 16 2 20 20 C 1.53001 * 117.50162 * 223.74275 * 19 18 16 21 21 C 1.53001 * 117.49973 * 155.08556 * 19 18 16 22 22 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 24 24 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 25 25 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 26 26 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 27 27 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 29 29 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 30 30 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 31 31 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 32 32 H 0.96996 * 119.99885 * 179.97438 * 11 10 8 33 33 H 0.96999 * 119.99358 * 359.97438 * 18 16 2 34 34 H 1.09003 * 115.55446 * 9.42254 * 19 18 16 35 35 H 1.09005 * 117.49423 * 0.02562 * 20 19 18 36 36 H 1.08993 * 117.49878 * 145.01836 * 20 19 18 37 37 H 1.09003 * 117.50461 * 214.98503 * 21 19 18 38 38 H 1.09005 * 117.49906 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6610 0.4201 4.7694 8 6 3.1653 -0.3244 5.9787 9 1 3.4143 -1.3726 5.9025 10 6 3.3099 0.3327 7.1821 11 7 3.0072 1.6092 7.2748 12 14 3.9343 -0.5903 8.6813 13 1 5.4155 -0.4991 8.7372 14 1 3.3548 0.0104 9.9095 15 1 3.5294 -2.0160 8.5890 16 6 2.0323 -0.7105 -1.2304 17 8 2.7296 -1.6966 -1.1191 18 7 1.7067 -0.2500 -2.4546 19 6 2.1955 -0.9403 -3.6506 20 6 2.7348 -0.0777 -4.7934 21 6 1.3841 -0.7830 -4.9382 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.4494 -1.4979 1.4101 26 1 2.7588 1.0462 2.1182 27 1 1.0870 0.6163 2.5526 28 1 1.9183 -1.3565 3.8030 29 1 3.5903 -0.9272 3.3692 30 1 3.3380 1.2432 4.5406 31 1 1.6659 0.8145 4.9750 32 1 3.1085 2.0714 8.1216 33 1 1.1488 0.5385 -2.5435 34 1 2.6784 -1.9015 -3.4745 35 1 2.7264 1.0035 -4.6550 36 1 3.5724 -0.4714 -5.3691 37 1 1.3336 -1.6406 -5.6093 38 1 0.4864 -0.1663 -4.8953 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157519425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:31 Heat of formation + Delta-G solvation = -50.720777 kcal Electronic energy + Delta-G solvation = -16589.210900 eV Core-core repulsion = 13851.790224 eV Total energy + Delta-G solvation = -2737.420676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96298 -38.38553 -37.50424 -35.67644 -34.15720 -33.25769 -30.57702 -27.70124 -25.68093 -24.16041 -23.25469 -22.46617 -22.05723 -21.26867 -18.58614 -18.05433 -17.60881 -16.70130 -16.51217 -16.07769 -15.81154 -15.31790 -15.20565 -14.70289 -14.38245 -13.80510 -13.60316 -13.56542 -13.43614 -13.05972 -12.68777 -12.57381 -12.46719 -12.41846 -12.29381 -12.26754 -11.54858 -11.45703 -11.39550 -11.18258 -10.75001 -10.54757 -9.71229 -9.33176 -8.20236 -6.30693 1.39907 1.41370 1.52607 1.61195 2.00816 2.41398 3.00525 3.12829 3.25102 3.71415 3.84097 4.00391 4.08004 4.09056 4.10693 4.27215 4.39046 4.63754 4.71060 4.77474 4.77730 4.85546 4.99813 5.03931 5.09508 5.16689 5.22189 5.23977 5.52142 5.55488 5.76086 5.86506 5.97517 6.27575 6.36738 6.60176 6.85787 7.30926 7.38265 8.91644 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.063011 B = 0.003266 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.262966 B = 8571.728144 C = 8719.958290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.068 3.932 3 H 0.116 0.884 4 N -0.684 5.684 5 C 0.077 3.923 6 C -0.095 4.095 7 C 0.028 3.972 8 C -0.545 4.545 9 H 0.056 0.944 10 C 0.000 4.000 11 N -0.932 5.932 12 Si 0.964 3.036 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.265 1.265 16 C 0.520 3.480 17 O -0.568 6.568 18 N -0.691 5.691 19 C 0.050 3.950 20 C -0.188 4.188 21 C -0.168 4.168 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.346 0.654 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.045 0.955 30 H -0.007 1.007 31 H -0.003 1.003 32 H 0.264 0.736 33 H 0.415 0.585 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.354 -0.712 -24.035 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.045 4.045 3 H 0.134 0.866 4 N -0.316 5.316 5 C -0.052 4.052 6 C -0.133 4.133 7 C -0.010 4.010 8 C -0.583 4.583 9 H 0.074 0.926 10 C -0.198 4.198 11 N -0.573 5.573 12 Si 0.789 3.211 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.189 1.189 16 C 0.307 3.693 17 O -0.446 6.446 18 N -0.343 5.343 19 C -0.057 4.057 20 C -0.226 4.226 21 C -0.206 4.206 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.112 0.888 25 H 0.165 0.835 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.011 0.989 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.198 -1.203 -23.980 24.797 hybrid contribution -0.645 0.189 1.182 1.360 sum -6.843 -1.014 -22.798 23.825 Atomic orbital electron populations 1.22400 0.92685 1.03275 1.04612 1.21536 0.95766 0.98706 0.88522 0.86624 1.60064 1.58363 1.09830 1.03308 1.21874 0.99427 0.94760 0.89090 1.21387 1.00021 0.98225 0.93688 1.18948 0.95096 0.94366 0.92598 1.21709 1.43856 0.96808 0.95932 0.92594 1.25962 0.95644 0.95815 1.02345 1.70085 1.49815 1.10565 1.26806 0.85460 0.78591 0.78901 0.78183 1.19855 1.20432 1.18926 1.20986 0.79182 0.84069 0.85105 1.90677 1.38731 1.28084 1.87075 1.45259 1.53193 1.31963 1.03897 1.21596 1.04442 0.98351 0.81267 1.23505 0.98306 0.99837 1.00966 1.23466 0.95680 1.03870 0.97627 0.92185 0.91092 0.88777 0.83457 0.91652 0.94319 0.93180 0.93656 0.98890 0.98495 0.92711 0.74727 0.87102 0.87606 0.87625 0.87038 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.06 71.98 0.65 -2.14 16 2 C 0.07 1.56 3.00 44.16 0.13 1.69 16 3 H 0.12 2.35 7.80 -2.39 -0.02 2.34 16 4 N -0.68 -21.11 5.74 -495.47 -2.84 -23.95 16 5 C 0.08 2.64 5.48 86.30 0.47 3.12 16 6 C -0.10 -4.11 5.41 30.59 0.17 -3.95 16 7 C 0.03 1.48 4.97 29.84 0.15 1.63 16 8 C -0.55 -32.07 9.11 25.60 0.23 -31.84 16 9 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 10 C 0.00 0.00 5.46 84.65 0.46 0.46 16 11 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 12 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 16 C 0.52 13.30 7.22 87.65 0.63 13.93 16 17 O -0.57 -20.45 16.00 -3.04 -0.05 -20.50 16 18 N -0.69 -11.85 5.46 -442.53 -2.42 -14.26 16 19 C 0.05 0.84 6.43 44.99 0.29 1.13 16 20 C -0.19 -2.21 10.46 30.62 0.32 -1.89 16 21 C -0.17 -1.68 10.46 30.62 0.32 -1.36 16 22 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 23 H 0.07 1.22 7.45 -2.39 -0.02 1.20 16 24 H 0.09 0.94 7.56 -2.39 -0.02 0.92 16 25 H 0.35 10.44 8.47 -89.69 -0.76 9.69 16 26 H 0.06 2.27 8.06 -2.39 -0.02 2.25 16 27 H 0.04 1.24 7.44 -2.39 -0.02 1.22 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 30 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.42 4.22 8.24 -92.71 -0.76 3.46 16 34 H 0.11 2.47 7.40 -2.39 -0.02 2.45 16 35 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -73.54 320.14 0.35 -73.19 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -0.48 Total: 14.52 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 3.83 Total: -19.21 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -4.97 Total: -95.32 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.54 0.35 -73.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157519425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.466 kcal (2) G-P(sol) polarization free energy of solvation -73.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds