Wall clock time and date at job start Mon Mar 30 2020 03:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47275 * 2 1 4 4 N 1.46897 * 109.47003 * 239.99613 * 2 1 3 5 5 C 1.46902 * 111.00114 * 85.00053 * 4 2 1 6 6 C 1.52995 * 109.47382 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47454 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99820 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00338 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00362 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00012 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.47403 * 89.99931 * 11 9 7 13 13 H 1.48500 * 109.47332 * 209.99947 * 11 9 7 14 14 H 1.48503 * 109.46978 * 329.99800 * 11 9 7 15 15 C 1.50704 * 109.47145 * 119.99943 * 2 1 3 16 16 O 1.21276 * 120.00453 * 93.28950 * 15 2 1 17 17 N 1.34777 * 119.99761 * 273.29241 * 15 2 1 18 18 C 1.47027 * 125.64983 * 354.77808 * 17 15 2 19 19 C 1.54316 * 107.40112 * 180.95061 * 18 17 15 20 20 C 1.55543 * 102.76391 * 22.24325 * 19 18 17 21 21 C 1.47425 * 125.64805 * 174.74571 * 17 15 2 22 22 H 1.09002 * 109.46869 * 294.70677 * 1 2 3 23 23 H 1.09004 * 109.47247 * 54.70435 * 1 2 3 24 24 H 1.08997 * 109.47397 * 174.70520 * 1 2 3 25 25 H 1.00901 * 111.00239 * 208.95180 * 4 2 1 26 26 H 1.08995 * 109.47188 * 300.00452 * 5 4 2 27 27 H 1.09001 * 109.46535 * 60.00027 * 5 4 2 28 28 H 1.09005 * 109.47530 * 300.00443 * 6 5 4 29 29 H 1.08998 * 109.46973 * 59.99814 * 6 5 4 30 30 H 0.96995 * 119.99961 * 180.02562 * 10 9 7 31 31 H 1.09003 * 109.88390 * 300.44537 * 18 17 15 32 32 H 1.08998 * 109.87726 * 61.45368 * 18 17 15 33 33 H 1.09005 * 110.72075 * 140.63710 * 19 18 17 34 34 H 1.09005 * 110.72425 * 263.90528 * 19 18 17 35 35 H 1.09005 * 110.96972 * 206.40528 * 20 19 18 36 36 H 1.08994 * 111.02936 * 82.56037 * 20 19 18 37 37 H 1.08997 * 110.36314 * 274.73837 * 21 17 15 38 38 H 1.08996 * 110.36929 * 36.94916 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0824 0.2224 -2.3469 6 6 2.5961 -0.5331 -3.5741 7 6 2.6611 0.4057 -4.7512 8 1 2.3660 1.4381 -4.6354 9 6 3.0974 -0.0533 -5.9758 10 7 3.1537 0.7659 -7.0032 11 14 3.6073 -1.8392 -6.1764 12 1 2.4274 -2.6494 -6.5716 13 1 4.6519 -1.9408 -7.2269 14 1 4.1480 -2.3470 -4.8899 15 6 2.0323 -0.7104 1.2305 16 8 2.2913 -1.8943 1.1840 17 7 2.1937 -0.0300 2.3827 18 6 2.0230 1.4204 2.5525 19 6 2.3326 1.7519 4.0275 20 6 3.2132 0.5495 4.4725 21 6 2.5701 -0.6170 3.6816 22 1 -0.3633 0.4296 0.9336 23 1 -0.3634 0.5938 -0.8388 24 1 -0.3634 -1.0232 -0.0948 25 1 2.9172 -1.1206 -1.0287 26 1 1.0871 0.6162 -2.5525 27 1 2.7588 1.0460 -2.1182 28 1 3.5916 -0.9265 -3.3683 29 1 1.9201 -1.3569 -3.8029 30 1 3.4603 0.4428 -7.8649 31 1 2.7139 1.9539 1.8997 32 1 0.9971 1.7030 2.3164 33 1 2.8867 2.6875 4.1043 34 1 1.4147 1.7969 4.6136 35 1 3.1332 0.3839 5.5469 36 1 4.2523 0.6953 4.1775 37 1 1.6859 -0.9858 4.2016 38 1 3.2895 -1.4233 3.5394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162716960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:54 Heat of formation + Delta-G solvation = -41.362943 kcal Electronic energy + Delta-G solvation = -17270.578781 eV Core-core repulsion = 14533.563891 eV Total energy + Delta-G solvation = -2737.014890 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.25219 -37.71898 -35.97505 -33.19011 -32.03055 -30.95744 -29.32372 -28.39890 -25.17332 -23.91671 -22.12302 -21.33541 -20.41804 -19.11232 -17.27237 -16.85113 -16.62101 -15.89373 -14.86053 -14.68309 -14.27100 -13.91583 -13.78147 -13.44293 -13.14849 -12.88322 -12.69604 -12.44355 -12.10135 -12.05908 -11.67875 -11.62152 -11.54586 -11.25747 -11.11376 -10.94059 -10.18048 -9.90123 -9.76178 -9.53038 -9.20668 -8.81037 -8.51083 -7.99637 -6.02474 -4.00903 2.59886 2.79711 3.36867 3.43414 3.50183 4.11815 4.23223 4.49614 4.53463 4.55426 4.68307 4.91642 5.01841 5.20696 5.29202 5.32531 5.33091 5.36879 5.48651 5.52799 5.62797 5.73297 5.78715 5.90696 6.11269 6.15602 6.20538 6.33655 6.77736 7.09478 7.33216 7.40502 7.58905 7.73724 7.89418 8.14487 8.54381 9.00889 9.60265 11.10688 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041048 B = 0.004428 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.963198 B = 6321.808626 C = 6491.079335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.074 3.926 3 H 0.059 0.941 4 N -0.675 5.675 5 C 0.074 3.926 6 C -0.010 4.010 7 C -0.521 4.521 8 H 0.071 0.929 9 C 0.068 3.932 10 N -0.904 5.904 11 Si 0.881 3.119 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.264 1.264 15 C 0.528 3.472 16 O -0.524 6.524 17 N -0.624 5.624 18 C 0.097 3.903 19 C -0.131 4.131 20 C -0.134 4.134 21 C 0.103 3.897 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.344 0.656 26 H 0.067 0.933 27 H 0.022 0.978 28 H 0.014 0.986 29 H 0.023 0.977 30 H 0.263 0.737 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 2.412 24.025 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.040 4.040 3 H 0.077 0.923 4 N -0.308 5.308 5 C -0.054 4.054 6 C -0.048 4.048 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.133 4.133 10 N -0.543 5.543 11 Si 0.709 3.291 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.189 1.189 15 C 0.316 3.684 16 O -0.398 6.398 17 N -0.361 5.361 18 C -0.026 4.026 19 C -0.169 4.169 20 C -0.172 4.172 21 C -0.019 4.019 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.163 0.837 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.931 1.478 23.547 23.775 hybrid contribution 1.045 -0.204 -0.023 1.065 sum -1.886 1.274 23.524 23.634 Atomic orbital electron populations 1.21685 0.92280 1.03560 1.01469 1.21483 0.97783 0.96219 0.88495 0.92311 1.60566 1.34327 1.33282 1.02665 1.22067 1.00299 0.93228 0.89787 1.19546 0.95944 0.96628 0.92692 1.21047 1.44341 0.97674 0.92881 0.91092 1.24991 0.94961 0.97646 0.95750 1.69914 1.47821 1.35395 1.01202 0.86744 0.78681 0.85602 0.78092 1.20173 1.21502 1.18901 1.20666 0.77026 0.87225 0.83464 1.90711 1.49646 1.15475 1.83976 1.48583 1.70106 1.08489 1.08943 1.22080 1.01764 0.81229 0.97549 1.22704 1.00561 0.98942 0.94713 1.22855 0.99699 0.94420 1.00239 1.22205 0.99593 0.96733 0.83371 0.92867 0.91082 0.91186 0.83668 0.91435 0.95932 0.96768 0.95869 0.92730 0.91205 0.91079 0.89831 0.90429 0.89804 0.90510 0.91572 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.36 37.16 0.35 -1.40 16 2 C 0.07 1.10 2.60 -68.87 -0.18 0.92 16 3 H 0.06 0.80 6.85 -51.93 -0.36 0.45 16 4 N -0.67 -12.55 6.09 -107.96 -0.66 -13.21 16 5 C 0.07 1.53 5.42 -3.83 -0.02 1.51 16 6 C -0.01 -0.26 4.30 -27.89 -0.12 -0.38 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 11 Si 0.88 22.46 27.47 -169.99 -4.67 17.79 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 15 C 0.53 8.04 6.84 -10.98 -0.08 7.97 16 16 O -0.52 -9.95 16.50 5.56 0.09 -9.85 16 17 N -0.62 -7.23 3.33 -170.52 -0.57 -7.79 16 18 C 0.10 0.80 6.10 -3.07 -0.02 0.78 16 19 C -0.13 -0.76 6.98 -24.69 -0.17 -0.93 16 20 C -0.13 -0.86 7.10 -24.37 -0.17 -1.03 16 21 C 0.10 0.98 6.93 -2.53 -0.02 0.97 16 22 H 0.05 0.57 7.84 -51.93 -0.41 0.16 16 23 H 0.07 0.94 7.59 -51.93 -0.39 0.54 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.34 6.60 7.97 -39.29 -0.31 6.29 16 26 H 0.07 1.38 7.54 -51.93 -0.39 0.98 16 27 H 0.02 0.46 8.06 -51.93 -0.42 0.04 16 28 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 29 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 32 H 0.07 0.53 7.84 -51.93 -0.41 0.12 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.85 7.99 -51.93 -0.41 0.43 16 LS Contribution 308.37 15.07 4.65 4.65 Total: -1.00 -33.73 308.37 -7.64 -41.37 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.40 Total: -0.38 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.86 Total: -5.12 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.45 Total: -48.45 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.67 Total: 17.79 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.73 -7.64 -41.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162716960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.011 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds