Wall clock time and date at job start Mon Mar 30 2020 03:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47275 * 2 1 4 4 N 1.46897 * 109.47003 * 239.99613 * 2 1 3 5 5 C 1.46902 * 111.00114 * 85.00053 * 4 2 1 6 6 C 1.52995 * 109.47382 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47454 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99820 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00338 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00362 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00012 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.47403 * 89.99931 * 11 9 7 13 13 H 1.48500 * 109.47332 * 209.99947 * 11 9 7 14 14 H 1.48503 * 109.46978 * 329.99800 * 11 9 7 15 15 C 1.50704 * 109.47145 * 119.99943 * 2 1 3 16 16 O 1.21276 * 120.00453 * 93.28950 * 15 2 1 17 17 N 1.34777 * 119.99761 * 273.29241 * 15 2 1 18 18 C 1.47027 * 125.64983 * 354.77808 * 17 15 2 19 19 C 1.54316 * 107.40112 * 180.95061 * 18 17 15 20 20 C 1.55543 * 102.76391 * 22.24325 * 19 18 17 21 21 C 1.47425 * 125.64805 * 174.74571 * 17 15 2 22 22 H 1.09002 * 109.46869 * 294.70677 * 1 2 3 23 23 H 1.09004 * 109.47247 * 54.70435 * 1 2 3 24 24 H 1.08997 * 109.47397 * 174.70520 * 1 2 3 25 25 H 1.00901 * 111.00239 * 208.95180 * 4 2 1 26 26 H 1.08995 * 109.47188 * 300.00452 * 5 4 2 27 27 H 1.09001 * 109.46535 * 60.00027 * 5 4 2 28 28 H 1.09005 * 109.47530 * 300.00443 * 6 5 4 29 29 H 1.08998 * 109.46973 * 59.99814 * 6 5 4 30 30 H 0.96995 * 119.99961 * 180.02562 * 10 9 7 31 31 H 1.09003 * 109.88390 * 300.44537 * 18 17 15 32 32 H 1.08998 * 109.87726 * 61.45368 * 18 17 15 33 33 H 1.09005 * 110.72075 * 140.63710 * 19 18 17 34 34 H 1.09005 * 110.72425 * 263.90528 * 19 18 17 35 35 H 1.09005 * 110.96972 * 206.40528 * 20 19 18 36 36 H 1.08994 * 111.02936 * 82.56037 * 20 19 18 37 37 H 1.08997 * 110.36314 * 274.73837 * 21 17 15 38 38 H 1.08996 * 110.36929 * 36.94916 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0824 0.2224 -2.3469 6 6 2.5961 -0.5331 -3.5741 7 6 2.6611 0.4057 -4.7512 8 1 2.3660 1.4381 -4.6354 9 6 3.0974 -0.0533 -5.9758 10 7 3.1537 0.7659 -7.0032 11 14 3.6073 -1.8392 -6.1764 12 1 2.4274 -2.6494 -6.5716 13 1 4.6519 -1.9408 -7.2269 14 1 4.1480 -2.3470 -4.8899 15 6 2.0323 -0.7104 1.2305 16 8 2.2913 -1.8943 1.1840 17 7 2.1937 -0.0300 2.3827 18 6 2.0230 1.4204 2.5525 19 6 2.3326 1.7519 4.0275 20 6 3.2132 0.5495 4.4725 21 6 2.5701 -0.6170 3.6816 22 1 -0.3633 0.4296 0.9336 23 1 -0.3634 0.5938 -0.8388 24 1 -0.3634 -1.0232 -0.0948 25 1 2.9172 -1.1206 -1.0287 26 1 1.0871 0.6162 -2.5525 27 1 2.7588 1.0460 -2.1182 28 1 3.5916 -0.9265 -3.3683 29 1 1.9201 -1.3569 -3.8029 30 1 3.4603 0.4428 -7.8649 31 1 2.7139 1.9539 1.8997 32 1 0.9971 1.7030 2.3164 33 1 2.8867 2.6875 4.1043 34 1 1.4147 1.7969 4.6136 35 1 3.1332 0.3839 5.5469 36 1 4.2523 0.6953 4.1775 37 1 1.6859 -0.9858 4.2016 38 1 3.2895 -1.4233 3.5394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162716960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:53 Heat of formation + Delta-G solvation = -65.715510 kcal Electronic energy + Delta-G solvation = -17271.634788 eV Core-core repulsion = 14533.563891 eV Total energy + Delta-G solvation = -2738.070896 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28688 -38.65894 -37.42984 -35.17310 -33.36785 -32.26409 -30.24730 -29.75971 -26.56696 -25.30853 -23.19155 -22.29546 -21.94617 -20.13624 -18.95796 -18.33340 -17.62050 -17.13033 -16.35111 -15.92348 -15.73429 -15.33889 -14.87390 -14.61357 -14.41867 -14.22230 -13.77440 -13.73634 -13.33790 -13.20604 -13.03975 -13.00699 -12.65505 -12.20170 -12.14738 -11.99300 -11.84241 -11.67937 -11.59807 -11.42658 -10.81174 -10.77739 -9.73264 -9.46050 -8.31275 -6.35181 1.36279 1.36828 1.45023 1.50013 1.85245 2.35379 3.04376 3.14883 3.35947 3.66038 3.83044 4.01485 4.06979 4.16515 4.29278 4.41358 4.46642 4.50366 4.62363 4.70098 4.81348 4.84865 4.93090 4.93304 4.98842 5.11004 5.21615 5.23915 5.27817 5.38102 5.44738 5.60156 6.00166 6.18942 6.31492 6.41371 6.72030 7.03401 7.29919 8.84970 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041048 B = 0.004428 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.963198 B = 6321.808626 C = 6491.079335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.072 3.928 3 H 0.077 0.923 4 N -0.683 5.683 5 C 0.089 3.911 6 C -0.006 4.006 7 C -0.531 4.531 8 H 0.039 0.961 9 C 0.010 3.990 10 N -0.947 5.947 11 Si 0.948 3.052 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.254 1.254 15 C 0.524 3.476 16 O -0.573 6.573 17 N -0.620 5.620 18 C 0.085 3.915 19 C -0.122 4.122 20 C -0.125 4.125 21 C 0.094 3.906 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.339 0.661 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.014 0.986 29 H 0.019 0.981 30 H 0.267 0.733 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 2.614 26.174 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.040 4.040 3 H 0.095 0.905 4 N -0.317 5.317 5 C -0.039 4.039 6 C -0.044 4.044 7 C -0.569 4.569 8 H 0.058 0.942 9 C -0.187 4.187 10 N -0.588 5.588 11 Si 0.772 3.228 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.178 1.178 15 C 0.313 3.687 16 O -0.452 6.452 17 N -0.355 5.355 18 C -0.037 4.037 19 C -0.159 4.159 20 C -0.163 4.163 21 C -0.028 4.028 22 H 0.101 0.899 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.158 0.842 26 H 0.087 0.913 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.125 1.727 25.748 25.994 hybrid contribution 1.077 -0.158 -0.618 1.252 sum -2.048 1.569 25.130 25.262 Atomic orbital electron populations 1.21666 0.90915 1.02779 1.03132 1.21584 0.98753 0.96587 0.87113 0.90509 1.60478 1.34108 1.33374 1.03704 1.21748 1.00097 0.92891 0.89184 1.19443 0.95997 0.95953 0.93035 1.21351 1.43816 0.97112 0.94622 0.94230 1.25896 0.95041 1.02362 0.95413 1.70042 1.49105 1.37691 1.01934 0.85686 0.78687 0.79870 0.78553 1.19279 1.20658 1.17831 1.20635 0.76942 0.86676 0.84463 1.90684 1.52173 1.17435 1.84888 1.48663 1.68161 1.10069 1.08561 1.22412 1.02691 0.78949 0.99674 1.22730 1.01321 0.99174 0.92718 1.22847 0.99277 0.93122 1.01058 1.22430 0.99832 0.97654 0.82908 0.89866 0.91022 0.92881 0.84223 0.91276 0.95725 0.96800 0.96233 0.92374 0.91155 0.89760 0.88055 0.88885 0.87438 0.90889 0.90668 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.36 71.98 0.67 -2.49 16 2 C 0.07 2.08 2.60 44.17 0.11 2.20 16 3 H 0.08 1.95 6.85 -2.39 -0.02 1.93 16 4 N -0.68 -25.09 6.09 -495.47 -3.02 -28.11 16 5 C 0.09 3.64 5.42 86.30 0.47 4.11 16 6 C -0.01 -0.32 4.30 29.85 0.13 -0.19 16 7 C -0.53 -31.19 9.66 25.60 0.25 -30.94 16 8 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 9 C 0.01 0.61 5.47 84.65 0.46 1.07 16 10 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 11 Si 0.95 46.19 27.47 68.60 1.88 48.07 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 H -0.25 -11.89 6.54 99.48 0.65 -11.24 16 15 C 0.52 15.63 6.84 87.66 0.60 16.23 16 16 O -0.57 -22.04 16.50 -3.02 -0.05 -22.09 16 17 N -0.62 -13.37 3.33 -811.80 -2.70 -16.07 16 18 C 0.08 1.16 6.10 86.73 0.53 1.69 16 19 C -0.12 -0.95 6.98 31.92 0.22 -0.72 16 20 C -0.13 -1.24 7.10 32.12 0.23 -1.01 16 21 C 0.09 1.65 6.93 86.86 0.60 2.25 16 22 H 0.08 1.55 7.84 -2.39 -0.02 1.53 16 23 H 0.07 1.78 7.59 -2.38 -0.02 1.76 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.34 12.99 7.97 -89.69 -0.71 12.28 16 26 H 0.07 2.78 7.54 -2.39 -0.02 2.76 16 27 H 0.02 0.98 8.06 -2.39 -0.02 0.96 16 28 H 0.01 0.68 7.20 -2.38 -0.02 0.66 16 29 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 30 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.07 0.98 7.92 -2.39 -0.02 0.96 16 32 H 0.08 0.96 7.84 -2.39 -0.02 0.94 16 33 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.26 7.99 -2.39 -0.02 1.24 16 Total: -1.00 -73.87 308.37 0.95 -72.92 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.26 Total: 12.76 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 4.28 Total: -7.82 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -5.42 Total: -103.83 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.05 Total: -22.09 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.88 Total: 48.07 kcal Total: -73.87 0.95 -72.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162716960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.200 kcal (2) G-P(sol) polarization free energy of solvation -73.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds