Wall clock time and date at job start Mon Mar 30 2020 04:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46943 * 2 1 4 4 C 1.34773 * 120.00081 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99812 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00243 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47105 * 179.97438 * 6 4 3 8 8 N 1.46906 * 109.46923 * 179.97438 * 7 6 4 9 9 C 1.46894 * 110.99880 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47155 * 185.38213 * 9 8 7 11 11 C 1.50708 * 115.54730 * 294.80053 * 10 9 8 12 12 H 1.07994 * 120.00501 * 95.20134 * 11 10 9 13 13 C 1.37881 * 119.99823 * 274.92856 * 11 10 9 14 14 N 1.31521 * 119.99926 * 355.42157 * 13 11 10 15 15 Si 1.86801 * 120.00038 * 175.41588 * 13 11 10 16 16 H 1.48495 * 109.46929 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46745 * 120.00135 * 15 13 11 18 18 H 1.48498 * 109.47103 * 239.99813 * 15 13 11 19 19 C 1.52996 * 117.50305 * 80.46470 * 10 9 8 20 20 C 1.52994 * 117.50444 * 149.12972 * 10 9 8 21 21 H 1.08998 * 109.47601 * 299.99959 * 1 2 3 22 22 H 1.09001 * 109.47006 * 60.00404 * 1 2 3 23 23 H 1.08999 * 109.46753 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47149 * 240.00307 * 2 1 3 25 25 H 1.09001 * 109.47006 * 119.99596 * 2 1 3 26 26 H 0.96998 * 119.99791 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47082 * 59.99247 * 6 4 3 28 28 H 1.09001 * 109.46634 * 299.99347 * 6 4 3 29 29 H 1.08996 * 109.47149 * 60.00031 * 7 6 4 30 30 H 1.09001 * 109.47006 * 299.99321 * 7 6 4 31 31 H 1.00901 * 110.99671 * 303.95463 * 8 7 6 32 32 H 1.08995 * 109.47366 * 65.38019 * 9 8 7 33 33 H 1.09006 * 109.46837 * 305.37455 * 9 8 7 34 34 H 0.96995 * 119.99832 * 185.00406 * 14 13 11 35 35 H 1.08999 * 117.50032 * 215.00249 * 19 10 9 36 36 H 1.09002 * 117.49839 * 0.02981 * 19 10 9 37 37 H 1.09004 * 117.49798 * 359.97366 * 20 10 9 38 38 H 1.09005 * 117.50278 * 144.97026 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1314 0.7058 -0.0005 6 6 3.8457 3.0484 0.0001 7 6 5.3757 3.0484 -0.0001 8 7 5.8653 4.4335 -0.0001 9 6 7.3337 4.4727 -0.0008 10 6 7.8053 5.9219 0.1344 11 6 7.4593 6.8283 -1.0189 12 1 6.5705 7.4402 -0.9770 13 6 8.2806 6.8804 -2.1251 14 7 9.4114 6.2088 -2.1369 15 14 7.7873 7.9048 -3.6072 16 1 6.4804 8.5589 -3.3439 17 1 8.8189 8.9436 -3.8564 18 1 7.6709 7.0269 -4.7992 19 6 7.8132 6.5344 1.5364 20 6 9.1332 6.1687 0.8531 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.3879 2.1185 0.0004 27 1 3.4827 3.5617 0.8904 28 1 3.4819 3.5627 -0.8895 29 1 5.7389 2.5350 -0.8903 30 1 5.7391 2.5343 0.8897 31 1 5.4897 4.9497 -0.7815 32 1 7.7079 4.0546 -0.9353 33 1 7.7132 3.8875 0.8369 34 1 10.0232 6.3023 -2.8837 35 1 7.5683 7.5928 1.6247 36 1 7.4829 5.9047 2.3626 37 1 9.6708 5.2985 1.2299 38 1 9.7569 6.9863 0.4915 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163183595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:12 Heat of formation + Delta-G solvation = -49.801651 kcal Electronic energy + Delta-G solvation = -16879.964203 eV Core-core repulsion = 14142.583383 eV Total energy + Delta-G solvation = -2737.380820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77279 -38.77034 -36.52953 -36.01777 -33.93285 -32.36219 -30.71289 -27.70271 -26.29628 -24.11590 -23.00721 -22.67080 -21.47164 -20.85392 -18.11359 -17.81764 -17.15776 -16.95645 -16.59132 -16.27088 -15.71403 -15.37824 -15.20722 -14.61695 -14.15628 -14.04923 -13.51427 -13.34770 -13.17217 -12.90853 -12.84387 -12.68528 -12.46727 -12.37215 -12.24956 -12.12229 -11.93685 -11.22719 -10.92341 -10.79766 -10.36080 -10.10129 -9.91341 -9.17868 -8.05016 -6.18236 1.42289 1.45608 1.56200 1.62679 2.20372 2.45439 3.22287 3.33685 3.74872 3.89071 4.07786 4.15329 4.22555 4.34059 4.38970 4.52378 4.66634 4.67847 4.73565 4.91936 4.94141 4.96619 5.04682 5.07004 5.09447 5.12430 5.27000 5.32865 5.49169 5.66336 5.72548 5.83755 6.26905 6.49654 6.56040 6.65310 6.92321 7.26409 7.50470 9.01975 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028881 B = 0.004485 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.272689 B = 6241.639060 C = 6780.676153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.108 3.892 3 N -0.719 5.719 4 C 0.512 3.488 5 O -0.591 6.591 6 C -0.125 4.125 7 C 0.076 3.924 8 N -0.672 5.672 9 C 0.119 3.881 10 C 0.024 3.976 11 C -0.500 4.500 12 H 0.059 0.941 13 C 0.020 3.980 14 N -0.912 5.912 15 Si 0.951 3.049 16 H -0.261 1.261 17 H -0.286 1.286 18 H -0.286 1.286 19 C -0.175 4.175 20 C -0.165 4.165 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.418 0.582 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.008 0.992 30 H 0.059 0.941 31 H 0.345 0.655 32 H -0.003 1.003 33 H 0.044 0.956 34 H 0.257 0.743 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.989 -7.562 3.650 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.016 4.016 3 N -0.373 5.373 4 C 0.300 3.700 5 O -0.472 6.472 6 C -0.165 4.165 7 C -0.054 4.054 8 N -0.303 5.303 9 C -0.011 4.011 10 C 0.023 3.977 11 C -0.538 4.538 12 H 0.077 0.923 13 C -0.180 4.180 14 N -0.550 5.550 15 Si 0.777 3.223 16 H -0.185 1.185 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.213 4.213 20 C -0.204 4.204 21 H 0.091 0.909 22 H 0.089 0.911 23 H 0.102 0.898 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.255 0.745 27 H 0.141 0.859 28 H 0.132 0.868 29 H 0.026 0.974 30 H 0.078 0.922 31 H 0.163 0.837 32 H 0.016 0.984 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.392 -8.254 4.195 19.703 hybrid contribution 0.505 0.400 -1.821 1.932 sum -16.887 -7.853 2.373 18.775 Atomic orbital electron populations 1.21948 0.91598 1.04185 1.03431 1.21385 0.96423 0.82556 1.01215 1.45998 1.06467 1.09942 1.74843 1.21012 0.82695 0.91723 0.74593 1.90690 1.56802 1.48127 1.51581 1.21518 0.95296 0.92758 1.06930 1.21567 0.94516 0.89629 0.99672 1.60435 1.07883 1.11844 1.50091 1.21185 0.87218 0.96118 0.96580 1.18901 0.96164 0.92256 0.90391 1.20761 1.09041 1.23706 1.00256 0.92306 1.25745 0.95046 0.96450 1.00745 1.70147 1.10327 1.42415 1.32127 0.85613 0.78659 0.78415 0.79599 1.18475 1.21221 1.21172 1.22846 1.01393 1.00002 0.97012 1.22408 0.91263 1.01048 1.05651 0.90935 0.91095 0.89831 0.92962 0.92721 0.74456 0.85869 0.86837 0.97371 0.92209 0.83713 0.98439 0.93783 0.93401 0.90706 0.89700 0.91615 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.03 71.98 0.72 -0.58 16 2 C 0.11 1.75 6.39 86.38 0.55 2.30 16 3 N -0.72 -12.48 5.56 -463.06 -2.57 -15.05 16 4 C 0.51 13.27 7.83 87.66 0.69 13.96 16 5 O -0.59 -21.23 15.98 -3.02 -0.05 -21.28 16 6 C -0.13 -2.97 5.96 29.85 0.18 -2.79 16 7 C 0.08 2.58 4.97 86.30 0.43 3.01 16 8 N -0.67 -25.79 6.47 -513.89 -3.33 -29.11 16 9 C 0.12 5.47 5.54 86.30 0.48 5.95 16 10 C 0.02 1.16 1.65 -52.93 -0.09 1.08 16 11 C -0.50 -26.64 8.33 25.60 0.21 -26.42 16 12 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 13 C 0.02 1.07 5.43 84.65 0.46 1.53 16 14 N -0.91 -52.61 12.65 21.45 0.27 -52.34 16 15 Si 0.95 42.79 29.54 68.60 2.03 44.81 16 16 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 19 C -0.18 -7.73 9.96 30.62 0.30 -7.42 16 20 C -0.17 -8.09 9.14 30.62 0.28 -7.81 16 21 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 22 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.42 4.33 8.47 -92.71 -0.79 3.54 16 27 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.01 0.31 8.10 -2.39 -0.02 0.29 16 30 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 31 H 0.34 13.33 8.30 -89.69 -0.74 12.59 16 32 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.04 1.96 8.08 -2.38 -0.02 1.94 16 34 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 35 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 37 H 0.07 3.05 8.14 -2.39 -0.02 3.04 16 38 H 0.06 3.10 8.14 -2.38 -0.02 3.08 16 Total: -1.00 -67.21 321.64 0.07 -67.14 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.49 Total: 23.04 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 4.22 Total: -17.20 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -5.63 Total: -96.50 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.05 Total: -21.28 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -67.21 0.07 -67.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163183595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.333 kcal (2) G-P(sol) polarization free energy of solvation -67.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds