Wall clock time and date at job start Mon Mar 30 2020 03:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47185 * 2 1 4 4 C 1.50696 * 109.47171 * 239.99710 * 2 1 3 5 5 H 1.08002 * 120.00377 * 266.20548 * 4 2 1 6 6 C 1.37872 * 119.99937 * 86.48389 * 4 2 1 7 7 N 1.31517 * 120.00219 * 184.89598 * 6 4 2 8 8 Si 1.86807 * 120.00066 * 4.89318 * 6 4 2 9 9 H 1.48498 * 109.47106 * 94.00585 * 8 6 4 10 10 H 1.48497 * 109.47422 * 214.00745 * 8 6 4 11 11 H 1.48503 * 109.47099 * 334.00631 * 8 6 4 12 12 N 1.46505 * 109.46664 * 119.99628 * 2 1 3 13 13 C 1.34771 * 120.00410 * 274.99833 * 12 2 1 14 14 O 1.21287 * 119.99870 * 354.94992 * 13 12 2 15 15 C 1.50697 * 120.00080 * 174.94830 * 13 12 2 16 16 C 1.53003 * 110.43636 * 301.33384 * 15 13 12 17 17 N 1.46900 * 109.47017 * 294.73479 * 16 15 13 18 18 C 1.54898 * 110.48594 * 178.65305 * 15 13 12 19 19 C 1.54894 * 102.74369 * 279.26258 * 18 15 13 20 20 C 1.54265 * 104.19875 * 322.05440 * 19 18 15 21 21 C 1.53873 * 106.59564 * 23.61379 * 20 19 18 22 22 H 1.09007 * 109.47333 * 305.06241 * 1 2 3 23 23 H 1.09005 * 109.47095 * 65.05980 * 1 2 3 24 24 H 1.08998 * 109.47202 * 185.06327 * 1 2 3 25 25 H 0.97000 * 119.99877 * 180.02562 * 7 6 4 26 26 H 0.97007 * 119.99423 * 95.00694 * 12 2 1 27 27 H 1.08996 * 109.46558 * 54.72753 * 16 15 13 28 28 H 1.08992 * 109.47103 * 174.72825 * 16 15 13 29 29 H 1.00893 * 111.00333 * 62.43494 * 17 16 15 30 30 H 1.00897 * 110.99876 * 186.39901 * 17 16 15 31 31 H 1.08998 * 110.75626 * 37.57603 * 18 15 13 32 32 H 1.09000 * 110.75686 * 160.95059 * 18 15 13 33 33 H 1.09001 * 110.48259 * 203.37607 * 19 18 15 34 34 H 1.08996 * 110.48763 * 80.74151 * 19 18 15 35 35 H 1.08997 * 110.03734 * 264.32951 * 20 19 18 36 36 H 1.08996 * 110.02655 * 142.89385 * 20 19 18 37 37 H 1.08995 * 110.03473 * 240.70931 * 21 20 19 38 38 H 1.09008 * 110.03261 * 119.28253 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2707 -1.7629 -1.1868 6 6 2.1931 -0.0156 -2.4103 7 7 2.5387 -0.6534 -3.5073 8 14 1.9199 1.8320 -2.4509 9 1 3.2163 2.5285 -2.2523 10 1 1.3464 2.2189 -3.7649 11 1 0.9799 2.2173 -1.3677 12 7 2.0182 -0.6906 1.1963 13 6 2.1470 -0.0183 2.3572 14 8 1.9468 1.1775 2.3909 15 6 2.5396 -0.7522 3.6135 16 6 1.5274 -1.8563 3.9256 17 7 0.2253 -1.2525 4.2389 18 6 2.6555 0.2330 4.8031 19 6 4.0596 0.8538 4.5971 20 6 4.9238 -0.3226 4.0980 21 6 3.9574 -1.3436 3.4726 22 1 -0.3634 0.5904 0.8412 23 1 -0.3633 0.4334 -0.9319 24 1 -0.3633 -1.0236 0.0907 25 1 2.6521 -0.1644 -4.3373 26 1 2.2490 -1.6318 1.1527 27 1 1.4254 -2.5109 3.0601 28 1 1.8743 -2.4360 4.7808 29 1 -0.1365 -0.7422 3.4474 30 1 -0.4322 -1.9520 4.5495 31 1 1.8823 0.9993 4.7468 32 1 2.6043 -0.3000 5.7525 33 1 4.4481 1.2395 5.5397 34 1 4.0211 1.6440 3.8474 35 1 5.4562 -0.7760 4.9341 36 1 5.6336 0.0274 3.3485 37 1 4.0207 -2.2925 4.0051 38 1 4.1982 -1.4892 2.4195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168143994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:30 Heat of formation + Delta-G solvation = -60.309927 kcal Electronic energy + Delta-G solvation = -18381.833424 eV Core-core repulsion = 15643.996931 eV Total energy + Delta-G solvation = -2737.836493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.07167 -36.99248 -34.84588 -34.09254 -32.33842 -30.21575 -28.54673 -28.36395 -25.29675 -23.55159 -22.62805 -20.32265 -20.01830 -18.97070 -16.98387 -16.17278 -16.08829 -15.44833 -14.88949 -14.46464 -14.39107 -13.90398 -13.66885 -13.19986 -13.03981 -12.59922 -12.34687 -11.97232 -11.54059 -11.25836 -11.17911 -11.09108 -10.88800 -10.80701 -10.73257 -10.67467 -10.52979 -10.23885 -9.84467 -9.21267 -8.93300 -8.69081 -8.64864 -8.05948 -6.23277 -4.26038 3.24368 3.32422 3.34158 3.42032 4.00357 4.32668 4.41396 4.78962 4.86777 4.98150 5.14605 5.25524 5.44263 5.46392 5.64156 5.68310 5.80606 5.85896 5.97089 6.05728 6.10413 6.22777 6.31969 6.39550 6.49106 6.54479 6.65379 6.67381 6.94163 7.11859 7.18653 7.38077 7.44137 7.56309 8.15743 8.58564 8.76682 9.03467 9.39207 10.88644 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028538 B = 0.007539 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.917064 B = 3712.884344 C = 3945.354405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.232 3.768 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.077 0.923 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.871 3.129 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.256 1.256 12 N -0.707 5.707 13 C 0.516 3.484 14 O -0.550 6.550 15 C -0.085 4.085 16 C 0.079 3.921 17 N -0.847 5.847 18 C -0.080 4.080 19 C -0.129 4.129 20 C -0.123 4.123 21 C -0.114 4.114 22 H 0.027 0.973 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.267 0.733 26 H 0.391 0.609 27 H 0.032 0.968 28 H 0.077 0.923 29 H 0.345 0.655 30 H 0.339 0.661 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -2.695 14.863 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.095 0.905 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.697 3.303 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.180 1.180 12 N -0.355 5.355 13 C 0.301 3.699 14 O -0.429 6.429 15 C -0.089 4.089 16 C -0.052 4.052 17 N -0.376 5.376 18 C -0.118 4.118 19 C -0.167 4.167 20 C -0.160 4.160 21 C -0.153 4.153 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.224 0.776 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.444 -1.412 15.196 15.268 hybrid contribution -0.314 -0.252 -1.136 1.205 sum 0.130 -1.664 14.060 14.159 Atomic orbital electron populations 1.22282 0.98919 0.99797 0.99731 1.19100 0.90560 0.94542 0.82872 0.93227 1.21004 1.45624 0.97789 0.92510 0.90506 1.24887 0.93782 0.98426 0.95278 1.69890 1.46647 1.36261 0.99939 0.86942 0.79573 0.85881 0.77883 1.20092 1.21082 1.17992 1.46460 1.65381 1.13733 1.09934 1.20249 0.77292 0.87690 0.84667 1.90618 1.51451 1.14834 1.85979 1.21727 0.95447 0.96560 0.95130 1.21752 0.89701 0.94152 0.99641 1.58672 1.05134 1.31388 1.42422 1.22153 0.97034 0.97468 0.95169 1.22419 0.95410 0.98038 1.00790 1.22108 0.97891 0.96101 0.99925 1.22222 0.92484 0.98595 1.01963 0.95341 0.92731 0.93786 0.92324 0.77618 0.94967 0.90461 0.84223 0.84917 0.90157 0.91567 0.92142 0.91006 0.92007 0.91903 0.91087 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.09 37.16 0.34 -2.89 16 2 C 0.23 5.50 2.13 -69.08 -0.15 5.35 16 3 H 0.05 1.30 5.01 -51.93 -0.26 1.04 16 4 C -0.53 -14.27 9.06 -34.44 -0.31 -14.58 16 5 H 0.08 2.17 8.03 -52.49 -0.42 1.75 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 8 Si 0.87 21.57 26.42 -169.99 -4.49 17.08 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.26 -6.23 6.06 56.52 0.34 -5.88 16 12 N -0.71 -14.05 4.68 -54.93 -0.26 -14.31 16 13 C 0.52 9.80 5.45 -10.99 -0.06 9.74 16 14 O -0.55 -12.50 14.74 5.55 0.08 -12.42 16 15 C -0.08 -1.23 0.53 -154.00 -0.08 -1.31 16 16 C 0.08 0.96 5.62 -3.82 -0.02 0.94 16 17 N -0.85 -10.44 9.14 -10.37 -0.09 -10.53 16 18 C -0.08 -1.14 5.10 -24.73 -0.13 -1.27 16 19 C -0.13 -1.78 6.52 -25.07 -0.16 -1.94 16 20 C -0.12 -1.54 6.80 -25.61 -0.17 -1.72 16 21 C -0.11 -1.47 5.91 -25.61 -0.15 -1.63 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 1.21 7.07 -51.93 -0.37 0.84 16 24 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.39 7.03 7.86 -40.82 -0.32 6.70 16 27 H 0.03 0.39 7.55 -51.93 -0.39 0.00 16 28 H 0.08 0.80 8.02 -51.93 -0.42 0.39 16 29 H 0.34 4.90 8.31 -39.30 -0.33 4.57 16 30 H 0.34 3.32 9.08 -39.29 -0.36 2.96 16 31 H 0.08 1.33 7.41 -51.93 -0.38 0.94 16 32 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.18 7.65 -51.93 -0.40 0.78 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.75 7.75 -51.93 -0.40 0.34 16 38 H 0.07 1.02 7.47 -51.92 -0.39 0.64 16 LS Contribution 299.18 15.07 4.51 4.51 Total: -1.00 -30.59 299.18 -6.64 -37.23 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.16 Total: 11.11 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -1.00 Total: -7.15 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.42 Total: -50.36 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.49 Total: 17.08 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.59 -6.64 -37.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168143994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.082 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds