Wall clock time and date at job start Mon Mar 30 2020 03:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47185 * 2 1 4 4 C 1.50696 * 109.47171 * 239.99710 * 2 1 3 5 5 H 1.08002 * 120.00377 * 266.20548 * 4 2 1 6 6 C 1.37872 * 119.99937 * 86.48389 * 4 2 1 7 7 N 1.31517 * 120.00219 * 184.89598 * 6 4 2 8 8 Si 1.86807 * 120.00066 * 4.89318 * 6 4 2 9 9 H 1.48498 * 109.47106 * 94.00585 * 8 6 4 10 10 H 1.48497 * 109.47422 * 214.00745 * 8 6 4 11 11 H 1.48503 * 109.47099 * 334.00631 * 8 6 4 12 12 N 1.46505 * 109.46664 * 119.99628 * 2 1 3 13 13 C 1.34771 * 120.00410 * 274.99833 * 12 2 1 14 14 O 1.21287 * 119.99870 * 354.94992 * 13 12 2 15 15 C 1.50697 * 120.00080 * 174.94830 * 13 12 2 16 16 C 1.53003 * 110.43636 * 301.33384 * 15 13 12 17 17 N 1.46900 * 109.47017 * 294.73479 * 16 15 13 18 18 C 1.54898 * 110.48594 * 178.65305 * 15 13 12 19 19 C 1.54894 * 102.74369 * 279.26258 * 18 15 13 20 20 C 1.54265 * 104.19875 * 322.05440 * 19 18 15 21 21 C 1.53873 * 106.59564 * 23.61379 * 20 19 18 22 22 H 1.09007 * 109.47333 * 305.06241 * 1 2 3 23 23 H 1.09005 * 109.47095 * 65.05980 * 1 2 3 24 24 H 1.08998 * 109.47202 * 185.06327 * 1 2 3 25 25 H 0.97000 * 119.99877 * 180.02562 * 7 6 4 26 26 H 0.97007 * 119.99423 * 95.00694 * 12 2 1 27 27 H 1.08996 * 109.46558 * 54.72753 * 16 15 13 28 28 H 1.08992 * 109.47103 * 174.72825 * 16 15 13 29 29 H 1.00893 * 111.00333 * 62.43494 * 17 16 15 30 30 H 1.00897 * 110.99876 * 186.39901 * 17 16 15 31 31 H 1.08998 * 110.75626 * 37.57603 * 18 15 13 32 32 H 1.09000 * 110.75686 * 160.95059 * 18 15 13 33 33 H 1.09001 * 110.48259 * 203.37607 * 19 18 15 34 34 H 1.08996 * 110.48763 * 80.74151 * 19 18 15 35 35 H 1.08997 * 110.03734 * 264.32951 * 20 19 18 36 36 H 1.08996 * 110.02655 * 142.89385 * 20 19 18 37 37 H 1.08995 * 110.03473 * 240.70931 * 21 20 19 38 38 H 1.09008 * 110.03261 * 119.28253 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2707 -1.7629 -1.1868 6 6 2.1931 -0.0156 -2.4103 7 7 2.5387 -0.6534 -3.5073 8 14 1.9199 1.8320 -2.4509 9 1 3.2163 2.5285 -2.2523 10 1 1.3464 2.2189 -3.7649 11 1 0.9799 2.2173 -1.3677 12 7 2.0182 -0.6906 1.1963 13 6 2.1470 -0.0183 2.3572 14 8 1.9468 1.1775 2.3909 15 6 2.5396 -0.7522 3.6135 16 6 1.5274 -1.8563 3.9256 17 7 0.2253 -1.2525 4.2389 18 6 2.6555 0.2330 4.8031 19 6 4.0596 0.8538 4.5971 20 6 4.9238 -0.3226 4.0980 21 6 3.9574 -1.3436 3.4726 22 1 -0.3634 0.5904 0.8412 23 1 -0.3633 0.4334 -0.9319 24 1 -0.3633 -1.0236 0.0907 25 1 2.6521 -0.1644 -4.3373 26 1 2.2490 -1.6318 1.1527 27 1 1.4254 -2.5109 3.0601 28 1 1.8743 -2.4360 4.7808 29 1 -0.1365 -0.7422 3.4474 30 1 -0.4322 -1.9520 4.5495 31 1 1.8823 0.9993 4.7468 32 1 2.6043 -0.3000 5.7525 33 1 4.4481 1.2395 5.5397 34 1 4.0211 1.6440 3.8474 35 1 5.4562 -0.7760 4.9341 36 1 5.6336 0.0274 3.3485 37 1 4.0207 -2.2925 4.0051 38 1 4.1982 -1.4892 2.4195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168143994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:30 Heat of formation + Delta-G solvation = -83.421054 kcal Electronic energy + Delta-G solvation = -18382.835598 eV Core-core repulsion = 15643.996931 eV Total energy + Delta-G solvation = -2738.838666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44544 -38.38051 -36.63385 -35.12518 -34.33601 -31.86622 -29.79665 -29.43684 -27.32235 -24.57716 -24.12908 -21.85326 -21.28544 -20.56215 -18.77500 -17.65521 -17.23746 -17.13625 -16.26069 -15.83401 -15.42577 -15.31856 -15.13915 -14.77819 -14.55497 -14.32641 -14.06684 -13.34591 -13.10301 -12.97656 -12.82992 -12.42726 -12.35371 -12.14402 -11.94778 -11.86456 -11.85106 -11.76715 -11.28277 -11.25295 -10.85584 -10.46867 -9.78676 -9.59208 -8.40899 -6.45917 1.25566 1.31466 1.42928 1.82660 2.25025 2.48146 2.99676 3.39506 3.69019 3.76614 3.96033 4.17046 4.28466 4.43373 4.49548 4.61064 4.63388 4.70385 4.80175 4.80876 4.86194 4.92098 5.02758 5.07600 5.10500 5.20409 5.33886 5.35385 5.42853 5.45088 5.56832 5.73845 6.10822 6.14740 6.56286 6.57578 6.92785 7.19667 7.50739 8.74221 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028538 B = 0.007539 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.917064 B = 3712.884344 C = 3945.354405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.236 3.764 3 H 0.025 0.975 4 C -0.527 4.527 5 H 0.055 0.945 6 C 0.033 3.967 7 N -0.931 5.931 8 Si 0.922 3.078 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.252 1.252 12 N -0.705 5.705 13 C 0.515 3.485 14 O -0.591 6.591 15 C -0.080 4.080 16 C 0.081 3.919 17 N -0.851 5.851 18 C -0.076 4.076 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.113 4.113 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.270 0.730 26 H 0.401 0.599 27 H 0.034 0.966 28 H 0.108 0.892 29 H 0.332 0.668 30 H 0.354 0.646 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.107 0.893 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 -3.579 17.066 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.132 3.868 3 H 0.042 0.958 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.167 4.167 7 N -0.569 5.569 8 Si 0.747 3.253 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.176 1.176 12 N -0.354 5.354 13 C 0.303 3.697 14 O -0.472 6.472 15 C -0.083 4.083 16 C -0.051 4.051 17 N -0.381 5.381 18 C -0.113 4.113 19 C -0.168 4.168 20 C -0.159 4.159 21 C -0.152 4.152 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.236 0.764 27 H 0.052 0.948 28 H 0.126 0.874 29 H 0.143 0.857 30 H 0.168 0.832 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.423 -2.327 17.426 17.586 hybrid contribution -0.289 -0.009 -1.768 1.791 sum 0.134 -2.336 15.658 15.832 Atomic orbital electron populations 1.22148 0.97174 1.00938 0.99680 1.18832 0.91798 0.93030 0.83169 0.95752 1.21203 1.44617 0.96979 0.93684 0.92635 1.25545 0.94022 1.02017 0.95159 1.69982 1.48542 1.37797 1.00616 0.86119 0.79335 0.81547 0.78287 1.20446 1.20005 1.17557 1.46253 1.65638 1.14128 1.09369 1.21082 0.75815 0.87324 0.85523 1.90600 1.53040 1.16888 1.86651 1.21758 0.97202 0.97008 0.92363 1.21822 0.88970 0.93209 1.01050 1.58677 1.05689 1.32030 1.41717 1.22132 0.96185 0.96871 0.96149 1.22409 0.95916 0.97665 1.00843 1.22138 0.97531 0.95543 1.00683 1.22284 0.91111 1.00219 1.01550 0.94492 0.93488 0.92198 0.92085 0.76420 0.94770 0.87385 0.85673 0.83215 0.93009 0.88813 0.89892 0.94723 0.88856 0.93140 0.87476 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.00 9.09 71.98 0.65 -5.34 16 2 C 0.24 11.19 2.13 44.24 0.09 11.29 16 3 H 0.02 1.29 5.01 -2.39 -0.01 1.28 16 4 C -0.53 -28.59 9.06 25.60 0.23 -28.36 16 5 H 0.06 3.20 8.03 -2.91 -0.02 3.17 16 6 C 0.03 1.85 5.47 84.65 0.46 2.31 16 7 N -0.93 -55.71 13.96 21.45 0.30 -55.41 16 8 Si 0.92 44.94 26.42 68.60 1.81 46.75 16 9 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.25 -11.99 6.06 99.48 0.60 -11.39 16 12 N -0.70 -27.78 4.68 -446.10 -2.09 -29.86 16 13 C 0.51 19.33 5.45 87.66 0.48 19.81 16 14 O -0.59 -27.20 14.74 -3.05 -0.04 -27.24 16 15 C -0.08 -2.14 0.53 -51.85 -0.03 -2.16 16 16 C 0.08 1.70 5.62 86.30 0.49 2.19 16 17 N -0.85 -18.94 9.14 -186.72 -1.71 -20.64 16 18 C -0.08 -1.99 5.10 31.89 0.16 -1.83 16 19 C -0.13 -3.41 6.52 31.67 0.21 -3.20 16 20 C -0.12 -2.74 6.80 31.32 0.21 -2.53 16 21 C -0.11 -2.61 5.91 31.32 0.18 -2.42 16 22 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.05 2.05 7.07 -2.38 -0.02 2.03 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 26 H 0.40 14.14 7.86 -92.70 -0.73 13.41 16 27 H 0.03 0.72 7.55 -2.39 -0.02 0.70 16 28 H 0.11 1.69 8.02 -2.39 -0.02 1.67 16 29 H 0.33 8.95 8.31 -89.70 -0.75 8.21 16 30 H 0.35 5.94 9.08 -89.70 -0.81 5.13 16 31 H 0.05 1.68 7.41 -2.39 -0.02 1.66 16 32 H 0.09 1.97 8.06 -2.39 -0.02 1.95 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.03 1.14 7.65 -2.39 -0.02 1.13 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 1.73 7.75 -2.39 -0.02 1.71 16 38 H 0.05 1.46 7.47 -2.38 -0.02 1.44 16 Total: -1.00 -67.02 299.18 0.10 -66.92 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -1.32 Total: 29.74 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 3.15 Total: -10.26 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.49 Total: -105.91 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.04 Total: -27.24 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.81 Total: 46.75 kcal Total: -67.02 0.10 -66.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168143994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.498 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds