Wall clock time and date at job start Mon Mar 30 2020 03:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47379 * 2 1 4 4 C 1.46503 * 120.00534 * 276.43954 * 3 2 1 5 5 C 1.50701 * 109.46739 * 269.99896 * 4 3 2 6 6 H 1.07989 * 120.00331 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99686 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00144 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99886 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47467 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47297 * 120.00240 * 9 7 5 12 12 H 1.48505 * 109.47267 * 240.00208 * 9 7 5 13 13 C 1.34778 * 119.99916 * 96.43367 * 3 2 1 14 14 O 1.21283 * 120.00307 * 183.50224 * 13 3 2 15 15 C 1.50701 * 119.99936 * 3.49845 * 13 3 2 16 16 C 1.52993 * 112.90820 * 291.54770 * 15 13 3 17 17 N 1.46902 * 109.47282 * 309.35848 * 16 15 13 18 18 C 1.53779 * 113.61364 * 62.79724 * 15 13 3 19 19 C 1.53778 * 87.08329 * 89.11400 * 18 15 13 20 20 C 1.53777 * 113.61458 * 160.29099 * 15 13 3 21 21 H 1.09001 * 109.47212 * 65.15309 * 1 2 3 22 22 H 1.08997 * 109.47299 * 185.15339 * 1 2 3 23 23 H 1.09008 * 109.46855 * 305.15685 * 1 2 3 24 24 H 1.09000 * 109.46736 * 240.00408 * 2 1 3 25 25 H 1.08997 * 109.47310 * 120.00725 * 2 1 3 26 26 H 1.09005 * 109.47027 * 29.99486 * 4 3 2 27 27 H 1.08994 * 109.47400 * 149.99490 * 4 3 2 28 28 H 0.96995 * 120.00078 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47499 * 69.36125 * 16 15 13 30 30 H 1.09004 * 109.47391 * 189.36152 * 16 15 13 31 31 H 1.00900 * 110.99785 * 61.38448 * 17 16 15 32 32 H 1.00899 * 111.00359 * 185.33997 * 17 16 15 33 33 H 1.09008 * 113.61274 * 334.56527 * 18 15 13 34 34 H 1.08998 * 113.69283 * 203.67735 * 18 15 13 35 35 H 1.08998 * 113.61696 * 139.98001 * 19 18 15 36 36 H 1.09002 * 113.61565 * 270.88830 * 19 18 15 37 37 H 1.09002 * 113.61342 * 156.33544 * 20 15 13 38 38 H 1.09005 * 113.61794 * 25.43596 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1285 2.1193 -1.2607 5 6 3.4973 1.9017 -1.8522 6 1 4.2137 1.2766 -1.3402 7 6 3.8351 2.5008 -3.0472 8 7 2.9629 3.2626 -3.6706 9 14 5.5320 2.2317 -3.7801 10 1 6.3199 1.3410 -2.8907 11 1 5.3991 1.6021 -5.1185 12 1 6.2262 3.5377 -3.9143 13 6 2.3663 1.9729 1.1599 14 8 2.7101 3.1360 1.1681 15 6 2.3282 1.1894 2.4466 16 6 0.9066 0.8286 2.8822 17 7 0.0690 2.0353 2.8679 18 6 3.3010 -0.0013 2.4719 19 6 4.3524 0.9707 3.0327 20 6 3.1786 1.8068 3.5692 21 1 -0.3634 0.4318 -0.9325 22 1 -0.3634 -1.0235 0.0923 23 1 -0.3633 0.5918 0.8403 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.3704 1.7625 -1.9580 27 1 1.9783 3.1825 -1.0735 28 1 3.2006 3.6843 -4.5111 29 1 0.4924 0.0905 2.1955 30 1 0.9296 0.4143 3.8902 31 1 0.0133 2.4257 1.9392 32 1 -0.8509 1.8413 3.2343 33 1 3.5462 -0.3860 1.4818 34 1 3.0146 -0.7862 3.1718 35 1 4.9738 0.5373 3.8163 36 1 4.9334 1.4777 2.2623 37 1 2.8575 1.5171 4.5698 38 1 3.3249 2.8820 3.4653 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168487489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:29 Heat of formation + Delta-G solvation = -12.694878 kcal Electronic energy + Delta-G solvation = -18653.303025 eV Core-core repulsion = 15917.531276 eV Total energy + Delta-G solvation = -2735.771749 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47871 -37.00606 -35.39346 -33.83689 -32.69082 -30.10992 -27.90757 -26.49758 -25.44478 -23.47626 -22.96299 -21.96668 -20.04669 -17.73337 -16.44344 -16.19212 -15.79553 -15.66941 -14.87486 -14.62773 -14.24353 -13.93642 -13.54256 -13.09125 -12.84690 -12.32313 -12.23567 -12.10613 -11.91403 -11.61541 -11.35634 -11.17424 -10.88473 -10.71923 -10.56256 -10.46205 -10.18842 -10.07820 -9.96892 -9.59572 -8.72822 -8.50361 -8.43125 -7.61916 -6.03712 -4.08222 3.29518 3.36925 3.40025 3.47498 3.94174 4.44755 4.48257 4.76045 4.90937 5.06441 5.13722 5.26407 5.32038 5.36850 5.47782 5.56517 5.65113 5.71932 5.83234 5.93049 5.96232 6.05027 6.11435 6.22679 6.42603 6.47656 6.48677 6.66297 7.11194 7.21382 7.46738 7.52112 7.59493 7.93654 8.25170 8.48683 8.92453 9.17632 9.57170 11.04315 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026654 B = 0.008144 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.231131 B = 3437.135878 C = 3838.944884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.533 3.467 14 O -0.533 6.533 15 C -0.102 4.102 16 C 0.072 3.928 17 N -0.845 5.845 18 C -0.132 4.132 19 C -0.143 4.143 20 C -0.107 4.107 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.043 0.957 28 H 0.262 0.738 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.345 0.655 32 H 0.336 0.664 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 -9.318 11.694 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.319 3.681 14 O -0.409 6.409 15 C -0.106 4.106 16 C -0.059 4.059 17 N -0.376 5.376 18 C -0.170 4.170 19 C -0.181 4.181 20 C -0.145 4.145 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.801 -8.269 11.995 15.057 hybrid contribution 0.236 -0.750 -1.270 1.493 sum -3.566 -9.018 10.725 14.459 Atomic orbital electron populations 1.22381 0.97243 1.01224 1.02341 1.21643 0.93367 0.84805 1.03002 1.48179 1.63197 1.13138 1.08281 1.19253 0.96800 0.92885 0.78422 1.21471 0.99127 1.30002 1.05718 0.92488 1.24936 0.97353 0.94966 0.96889 1.69940 1.34649 1.31764 1.16999 0.86464 0.84248 0.78052 0.78789 1.19819 1.20997 1.20875 1.19574 0.77690 0.86986 0.83864 1.90651 1.47264 1.16859 1.86167 1.22000 0.95082 0.97697 0.95780 1.21967 0.91677 0.91668 1.00597 1.58634 1.17630 1.30621 1.30680 1.23083 0.96079 0.95840 1.02009 1.22858 0.96613 0.97885 1.00712 1.22705 0.94344 1.01332 0.96088 0.91969 0.92258 0.92943 0.90403 0.90512 0.95189 0.93878 0.92810 0.93750 0.90859 0.84122 0.85172 0.90442 0.89675 0.91607 0.89825 0.90208 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 9.23 37.16 0.34 -2.01 16 2 C 0.10 1.55 5.17 -4.04 -0.02 1.53 16 3 N -0.60 -12.51 2.46 -175.06 -0.43 -12.94 16 4 C 0.25 6.43 5.21 -5.19 -0.03 6.40 16 5 C -0.52 -14.91 9.39 -34.44 -0.32 -15.23 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.53 11.18 5.15 -10.98 -0.06 11.13 16 14 O -0.53 -13.74 15.54 5.55 0.09 -13.65 16 15 C -0.10 -1.60 0.48 -154.85 -0.07 -1.67 16 16 C 0.07 0.92 5.35 -3.83 -0.02 0.90 16 17 N -0.85 -11.52 9.22 -10.37 -0.10 -11.62 16 18 C -0.13 -1.80 5.84 -25.92 -0.15 -1.95 16 19 C -0.14 -2.09 7.80 -25.92 -0.20 -2.29 16 20 C -0.11 -1.63 7.10 -25.92 -0.18 -1.82 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.68 5.04 -51.92 -0.26 0.42 16 24 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 25 H 0.08 1.06 3.72 -51.93 -0.19 0.87 16 26 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 27 H 0.04 1.28 7.38 -51.93 -0.38 0.90 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.04 0.53 4.06 -51.93 -0.21 0.32 16 30 H 0.07 0.81 7.98 -51.93 -0.41 0.40 16 31 H 0.34 5.45 7.36 -39.29 -0.29 5.16 16 32 H 0.34 3.57 9.08 -39.29 -0.36 3.22 16 33 H 0.08 1.14 6.59 -51.92 -0.34 0.80 16 34 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.02 7.99 -51.93 -0.41 0.60 16 38 H 0.08 1.47 7.35 -51.93 -0.38 1.09 16 LS Contribution 297.07 15.07 4.48 4.48 Total: -1.00 -32.52 297.07 -6.81 -39.33 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.75 Total: 6.76 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -0.81 Total: -3.37 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.21 Total: -50.53 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.52 -6.81 -39.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168487489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.637 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds