Wall clock time and date at job start Mon Mar 30 2020 03:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47379 * 2 1 4 4 C 1.46503 * 120.00534 * 276.43954 * 3 2 1 5 5 C 1.50701 * 109.46739 * 269.99896 * 4 3 2 6 6 H 1.07989 * 120.00331 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99686 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00144 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99886 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47467 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47297 * 120.00240 * 9 7 5 12 12 H 1.48505 * 109.47267 * 240.00208 * 9 7 5 13 13 C 1.34778 * 119.99916 * 96.43367 * 3 2 1 14 14 O 1.21283 * 120.00307 * 183.50224 * 13 3 2 15 15 C 1.50701 * 119.99936 * 3.49845 * 13 3 2 16 16 C 1.52993 * 112.90820 * 291.54770 * 15 13 3 17 17 N 1.46902 * 109.47282 * 309.35848 * 16 15 13 18 18 C 1.53779 * 113.61364 * 62.79724 * 15 13 3 19 19 C 1.53778 * 87.08329 * 89.11400 * 18 15 13 20 20 C 1.53777 * 113.61458 * 160.29099 * 15 13 3 21 21 H 1.09001 * 109.47212 * 65.15309 * 1 2 3 22 22 H 1.08997 * 109.47299 * 185.15339 * 1 2 3 23 23 H 1.09008 * 109.46855 * 305.15685 * 1 2 3 24 24 H 1.09000 * 109.46736 * 240.00408 * 2 1 3 25 25 H 1.08997 * 109.47310 * 120.00725 * 2 1 3 26 26 H 1.09005 * 109.47027 * 29.99486 * 4 3 2 27 27 H 1.08994 * 109.47400 * 149.99490 * 4 3 2 28 28 H 0.96995 * 120.00078 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47499 * 69.36125 * 16 15 13 30 30 H 1.09004 * 109.47391 * 189.36152 * 16 15 13 31 31 H 1.00900 * 110.99785 * 61.38448 * 17 16 15 32 32 H 1.00899 * 111.00359 * 185.33997 * 17 16 15 33 33 H 1.09008 * 113.61274 * 334.56527 * 18 15 13 34 34 H 1.08998 * 113.69283 * 203.67735 * 18 15 13 35 35 H 1.08998 * 113.61696 * 139.98001 * 19 18 15 36 36 H 1.09002 * 113.61565 * 270.88830 * 19 18 15 37 37 H 1.09002 * 113.61342 * 156.33544 * 20 15 13 38 38 H 1.09005 * 113.61794 * 25.43596 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1285 2.1193 -1.2607 5 6 3.4973 1.9017 -1.8522 6 1 4.2137 1.2766 -1.3402 7 6 3.8351 2.5008 -3.0472 8 7 2.9629 3.2626 -3.6706 9 14 5.5320 2.2317 -3.7801 10 1 6.3199 1.3410 -2.8907 11 1 5.3991 1.6021 -5.1185 12 1 6.2262 3.5377 -3.9143 13 6 2.3663 1.9729 1.1599 14 8 2.7101 3.1360 1.1681 15 6 2.3282 1.1894 2.4466 16 6 0.9066 0.8286 2.8822 17 7 0.0690 2.0353 2.8679 18 6 3.3010 -0.0013 2.4719 19 6 4.3524 0.9707 3.0327 20 6 3.1786 1.8068 3.5692 21 1 -0.3634 0.4318 -0.9325 22 1 -0.3634 -1.0235 0.0923 23 1 -0.3633 0.5918 0.8403 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.3704 1.7625 -1.9580 27 1 1.9783 3.1825 -1.0735 28 1 3.2006 3.6843 -4.5111 29 1 0.4924 0.0905 2.1955 30 1 0.9296 0.4143 3.8902 31 1 0.0133 2.4257 1.9392 32 1 -0.8509 1.8413 3.2343 33 1 3.5462 -0.3860 1.4818 34 1 3.0146 -0.7862 3.1718 35 1 4.9738 0.5373 3.8163 36 1 4.9334 1.4777 2.2623 37 1 2.8575 1.5171 4.5698 38 1 3.3249 2.8820 3.4653 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168487489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:29 Heat of formation + Delta-G solvation = -36.776637 kcal Electronic energy + Delta-G solvation = -18654.347288 eV Core-core repulsion = 15917.531276 eV Total energy + Delta-G solvation = -2736.816013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.88379 -38.50592 -37.06303 -35.13606 -34.63008 -31.64388 -29.61944 -27.98660 -26.61540 -25.31401 -24.33761 -23.28198 -21.45185 -19.27150 -18.58906 -17.55895 -17.15414 -17.09997 -16.56191 -16.00019 -15.76023 -15.23060 -15.09183 -14.42973 -14.30319 -14.08122 -13.61664 -13.37097 -13.31440 -13.12760 -13.01065 -12.75944 -12.59232 -12.44666 -12.14559 -11.89192 -11.72669 -11.70846 -11.26898 -11.18479 -10.67400 -10.39918 -9.53310 -9.42180 -8.24740 -6.39694 1.33049 1.35716 1.47392 1.86328 2.28865 2.43048 3.04361 3.37529 3.54232 3.67403 3.91937 4.01010 4.08285 4.14821 4.35318 4.44463 4.55424 4.63982 4.79266 4.83384 4.86351 4.92875 4.93995 5.01885 5.02968 5.20509 5.21665 5.27006 5.35908 5.53913 5.56553 5.86297 6.04808 6.12706 6.57768 6.68876 6.83784 7.26795 7.53891 8.82390 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026654 B = 0.008144 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.231131 B = 3437.135878 C = 3838.944884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 N -0.599 5.599 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.526 3.474 14 O -0.597 6.597 15 C -0.104 4.104 16 C 0.075 3.925 17 N -0.857 5.857 18 C -0.118 4.118 19 C -0.146 4.146 20 C -0.106 4.106 21 H 0.039 0.961 22 H 0.099 0.901 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.020 0.980 27 H -0.006 1.006 28 H 0.267 0.733 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.328 0.672 32 H 0.354 0.646 33 H 0.064 0.936 34 H 0.136 0.864 35 H 0.099 0.901 36 H 0.040 0.960 37 H 0.117 0.883 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 -12.405 13.476 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.033 4.033 3 N -0.329 5.329 4 C 0.141 3.859 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.192 1.192 12 H -0.208 1.208 13 C 0.315 3.685 14 O -0.477 6.477 15 C -0.108 4.108 16 C -0.056 4.056 17 N -0.388 5.388 18 C -0.155 4.155 19 C -0.184 4.184 20 C -0.143 4.143 21 H 0.058 0.942 22 H 0.118 0.882 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.127 0.873 26 H 0.038 0.962 27 H 0.012 0.988 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.140 0.860 32 H 0.168 0.832 33 H 0.082 0.918 34 H 0.154 0.846 35 H 0.118 0.882 36 H 0.059 0.941 37 H 0.136 0.864 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.824 -11.414 13.800 18.312 hybrid contribution 0.203 0.256 -1.803 1.832 sum -3.620 -11.158 11.997 16.779 Atomic orbital electron populations 1.22327 0.94893 1.03691 1.01547 1.21980 0.95290 0.81920 1.04081 1.48168 1.63279 1.14802 1.06688 1.18668 0.95767 0.90826 0.80650 1.21720 0.99906 1.30180 1.06163 0.93055 1.25871 1.01579 0.94462 0.97317 1.70058 1.36765 1.32447 1.17491 0.85376 0.78986 0.78020 0.78491 1.19107 1.19221 1.20802 1.20607 0.75846 0.86646 0.85425 1.90611 1.49922 1.19928 1.87276 1.22008 0.98052 0.98212 0.92515 1.22077 0.89236 0.91464 1.02792 1.58629 1.19153 1.31419 1.29610 1.23158 0.94092 0.95732 1.02535 1.22815 0.96921 0.98048 1.00583 1.22783 0.94767 0.99032 0.97753 0.94176 0.88244 0.92212 0.91433 0.87272 0.96156 0.98829 0.92417 0.92254 0.87366 0.86022 0.83172 0.91765 0.84636 0.88215 0.94103 0.86434 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 9.23 71.98 0.66 -3.52 16 2 C 0.09 2.79 5.17 86.38 0.45 3.24 16 3 N -0.60 -25.89 2.46 -826.15 -2.03 -27.93 16 4 C 0.26 14.57 5.21 85.63 0.45 15.02 16 5 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 6 H 0.05 3.01 7.81 -2.92 -0.02 2.99 16 7 C 0.01 0.39 5.46 84.66 0.46 0.85 16 8 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 9 Si 0.97 45.84 29.54 68.60 2.03 47.86 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 C 0.53 22.74 5.15 87.66 0.45 23.20 16 14 O -0.60 -32.90 15.54 -3.04 -0.05 -32.95 16 15 C -0.10 -3.09 0.48 -52.41 -0.03 -3.11 16 16 C 0.07 1.64 5.35 86.30 0.46 2.10 16 17 N -0.86 -21.86 9.22 -186.73 -1.72 -23.58 16 18 C -0.12 -2.77 5.84 31.12 0.18 -2.59 16 19 C -0.15 -4.01 7.80 31.12 0.24 -3.77 16 20 C -0.11 -3.06 7.10 31.12 0.22 -2.84 16 21 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 1.42 5.04 -2.38 -0.01 1.41 16 24 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 25 H 0.11 2.68 3.72 -2.39 -0.01 2.67 16 26 H 0.02 1.15 8.07 -2.38 -0.02 1.13 16 27 H -0.01 -0.42 7.38 -2.39 -0.02 -0.43 16 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.06 1.14 4.06 -2.39 -0.01 1.13 16 30 H 0.11 1.72 7.98 -2.38 -0.02 1.70 16 31 H 0.33 10.37 7.36 -89.69 -0.66 9.71 16 32 H 0.35 6.63 9.08 -89.69 -0.81 5.81 16 33 H 0.06 1.72 6.59 -2.38 -0.02 1.71 16 34 H 0.14 1.94 8.10 -2.39 -0.02 1.92 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.12 2.51 7.99 -2.39 -0.02 2.49 16 38 H 0.04 1.53 7.35 -2.38 -0.02 1.51 16 Total: -1.00 -77.06 297.07 1.90 -75.15 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.40 Total: 21.58 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 3.79 Total: -3.18 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -3.47 Total: -108.47 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.05 Total: -32.95 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -77.06 1.90 -75.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168487489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.376 kcal (2) G-P(sol) polarization free energy of solvation -77.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds