Wall clock time and date at job start Mon Mar 30 2020 03:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47791 * 2 1 4 4 C 1.50702 * 109.47326 * 120.00093 * 2 1 3 5 5 H 1.07998 * 119.99871 * 119.99298 * 4 2 1 6 6 C 1.37878 * 119.99724 * 300.00179 * 4 2 1 7 7 N 1.31511 * 120.00150 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99665 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47467 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47034 * 119.99702 * 8 6 4 11 11 H 1.48495 * 109.47247 * 239.99813 * 8 6 4 12 12 N 1.46508 * 109.47077 * 239.99932 * 2 1 3 13 13 C 1.46500 * 119.99936 * 300.00253 * 12 2 1 14 14 C 1.34775 * 119.99937 * 120.00183 * 12 2 1 15 15 O 1.21286 * 119.99800 * 354.69671 * 14 12 2 16 16 C 1.50700 * 119.99942 * 174.69856 * 14 12 2 17 17 C 1.53002 * 112.84790 * 74.96675 * 16 14 12 18 18 N 1.46905 * 109.47268 * 57.26532 * 17 16 14 19 19 C 1.53782 * 113.61316 * 206.15698 * 16 14 12 20 20 C 1.53955 * 87.01675 * 89.23259 * 19 16 14 21 21 C 1.53772 * 113.61608 * 303.76781 * 16 14 12 22 22 H 1.08996 * 109.47791 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46916 * 300.00133 * 1 2 3 24 24 H 1.09005 * 109.47383 * 59.99427 * 1 2 3 25 25 H 0.97002 * 119.99725 * 179.97438 * 7 6 4 26 26 H 1.08992 * 109.47016 * 275.43147 * 13 12 2 27 27 H 1.08997 * 109.46662 * 35.43264 * 13 12 2 28 28 H 1.09002 * 109.46982 * 155.43046 * 13 12 2 29 29 H 1.09000 * 109.46936 * 177.26665 * 17 16 14 30 30 H 1.09004 * 109.46556 * 297.26716 * 17 16 14 31 31 H 1.00894 * 110.99686 * 61.11481 * 18 17 16 32 32 H 1.00900 * 110.99420 * 185.06101 * 18 17 16 33 33 H 1.09000 * 113.61219 * 203.75024 * 19 16 14 34 34 H 1.08998 * 113.61687 * 334.65276 * 19 16 14 35 35 H 1.09007 * 113.53733 * 270.81024 * 20 19 16 36 36 H 1.09002 * 113.66998 * 139.93038 * 20 19 16 37 37 H 1.09003 * 113.61336 * 25.34575 * 21 16 14 38 38 H 1.08995 * 113.61754 * 156.16472 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1455 -2.2877 3.6037 10 1 3.1466 -0.1874 4.8164 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0357 -2.0834 15 8 3.0071 1.1498 -1.9425 16 6 3.3936 -0.7763 -3.2504 17 6 2.3713 -1.0896 -4.3448 18 7 1.7533 0.1594 -4.8097 19 6 4.6897 -0.1417 -3.7817 20 6 5.4419 -1.0241 -2.7689 21 6 4.2458 -1.9881 -2.8383 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.7088 1.1613 3.4844 26 1 2.3607 -2.7372 -0.8912 27 1 0.6510 -2.2760 -1.0705 28 1 1.7177 -2.3098 -2.4950 29 1 2.8716 -1.5802 -5.1797 30 1 1.6011 -1.7490 -3.9444 31 1 2.4447 0.7806 -5.2022 32 1 1.0164 -0.0270 -5.4733 33 1 4.9036 -0.3907 -4.8211 34 1 4.7694 0.9258 -3.5761 35 1 5.5688 -0.5553 -1.7930 36 1 6.3672 -1.4474 -3.1597 37 1 3.9677 -2.4092 -1.8721 38 1 4.3369 -2.7435 -3.6187 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168500978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:11 Heat of formation + Delta-G solvation = -9.852350 kcal Electronic energy + Delta-G solvation = -18585.531336 eV Core-core repulsion = 15849.882848 eV Total energy + Delta-G solvation = -2735.648488 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.34487 -37.10014 -35.12518 -33.80629 -32.70370 -29.50493 -27.00053 -26.19626 -25.28856 -25.11843 -22.90959 -21.51987 -19.58854 -17.69439 -16.36759 -16.05662 -15.74212 -15.46154 -14.93826 -14.58424 -14.22834 -13.72443 -13.46114 -12.89760 -12.56003 -12.39993 -12.28753 -11.93531 -11.62214 -11.35712 -11.18106 -11.02049 -10.77489 -10.63352 -10.54075 -10.16678 -10.12699 -10.03387 -9.94372 -9.05538 -8.81864 -8.47255 -8.33523 -7.39722 -6.00694 -4.08426 3.28887 3.36544 3.39476 3.59635 4.05058 4.43308 4.49387 4.68723 4.96977 4.99267 5.05105 5.29429 5.33901 5.42906 5.59558 5.73611 5.78798 5.90527 6.03059 6.08551 6.18755 6.27964 6.37911 6.46805 6.57868 6.88628 6.96692 7.18665 7.20639 7.53365 7.59557 7.64935 7.81445 8.12843 8.29487 8.71476 8.92619 9.27193 9.58661 11.04421 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030657 B = 0.007679 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.122016 B = 3645.239217 C = 3981.022564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.061 0.939 4 C -0.522 4.522 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.590 5.590 13 C 0.083 3.917 14 C 0.548 3.452 15 O -0.548 6.548 16 C -0.102 4.102 17 C 0.080 3.920 18 N -0.842 5.842 19 C -0.121 4.121 20 C -0.140 4.140 21 C -0.134 4.134 22 H 0.028 0.972 23 H 0.091 0.909 24 H 0.013 0.987 25 H 0.262 0.738 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.342 0.658 32 H 0.338 0.662 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.598 -7.069 -13.147 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.079 0.921 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.321 5.321 13 C -0.061 4.061 14 C 0.334 3.666 15 O -0.427 6.427 16 C -0.106 4.106 17 C -0.051 4.051 18 N -0.372 5.372 19 C -0.159 4.159 20 C -0.177 4.177 21 C -0.172 4.172 22 H 0.047 0.953 23 H 0.110 0.890 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.394 -6.220 -12.132 14.049 hybrid contribution 0.543 -0.934 -0.049 1.081 sum 3.937 -7.153 -12.181 14.664 Atomic orbital electron populations 1.22062 0.98428 0.99141 1.00793 1.18875 0.90857 0.94380 0.79915 0.92092 1.21383 1.31520 1.12821 0.90382 0.92356 1.24898 0.95065 0.95012 0.98914 1.69902 1.36551 1.22674 1.23490 0.86470 0.78573 0.79582 0.82926 1.19871 1.20972 1.20993 1.48023 1.49249 1.11386 1.23465 1.21761 1.01082 0.83762 0.99496 1.19319 0.78562 0.86774 0.81971 1.90600 1.61483 1.15372 1.75205 1.22028 0.94780 0.97927 0.95855 1.21822 0.96325 0.91787 0.95127 1.58486 1.16354 1.15188 1.47139 1.22845 0.93827 1.01194 0.98044 1.22834 0.96867 0.97624 1.00387 1.23116 0.95799 0.95697 1.02572 0.95332 0.89026 0.96826 0.92836 0.93443 0.91609 0.92339 0.95209 0.90179 0.84531 0.84966 0.90482 0.89934 0.89774 0.91582 0.90011 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 8.93 37.15 0.33 -3.32 16 2 C 0.26 6.90 2.63 -69.08 -0.18 6.71 16 3 H 0.06 1.89 6.91 -51.93 -0.36 1.53 16 4 C -0.52 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.06 1.59 7.49 -52.49 -0.39 1.19 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.70 11.32 55.43 0.63 -25.08 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.59 -13.08 2.75 -175.27 -0.48 -13.56 16 13 C 0.08 1.46 8.25 59.85 0.49 1.96 16 14 C 0.55 11.78 5.98 -10.99 -0.07 11.72 16 15 O -0.55 -14.13 15.43 5.55 0.09 -14.04 16 16 C -0.10 -1.59 0.42 -154.85 -0.06 -1.66 16 17 C 0.08 1.04 5.84 -3.82 -0.02 1.02 16 18 N -0.84 -11.28 9.24 -10.36 -0.10 -11.37 16 19 C -0.12 -1.72 6.88 -25.83 -0.18 -1.90 16 20 C -0.14 -1.96 7.81 -25.83 -0.20 -2.16 16 21 C -0.13 -1.81 6.29 -25.92 -0.16 -1.97 16 22 H 0.03 0.65 6.70 -51.93 -0.35 0.31 16 23 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.05 0.81 6.91 -51.93 -0.36 0.45 16 27 H 0.07 1.17 6.45 -51.93 -0.34 0.84 16 28 H 0.06 0.84 3.84 -51.93 -0.20 0.64 16 29 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 30 H 0.08 1.04 5.66 -51.93 -0.29 0.74 16 31 H 0.34 4.31 8.79 -39.29 -0.35 3.96 16 32 H 0.34 3.59 9.08 -39.29 -0.36 3.24 16 33 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.08 1.36 7.40 -51.93 -0.38 0.98 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.22 5.80 -51.93 -0.30 0.92 16 38 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 294.44 15.07 4.44 4.44 Total: -1.00 -32.22 294.44 -6.54 -38.76 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.65 Total: 7.14 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.43 Total: -2.67 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.05 Total: -50.01 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.04 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.22 -6.54 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168500978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.908 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds