Wall clock time and date at job start Mon Mar 30 2020 03:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47791 * 2 1 4 4 C 1.50702 * 109.47326 * 120.00093 * 2 1 3 5 5 H 1.07998 * 119.99871 * 119.99298 * 4 2 1 6 6 C 1.37878 * 119.99724 * 300.00179 * 4 2 1 7 7 N 1.31511 * 120.00150 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99665 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47467 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47034 * 119.99702 * 8 6 4 11 11 H 1.48495 * 109.47247 * 239.99813 * 8 6 4 12 12 N 1.46508 * 109.47077 * 239.99932 * 2 1 3 13 13 C 1.46500 * 119.99936 * 300.00253 * 12 2 1 14 14 C 1.34775 * 119.99937 * 120.00183 * 12 2 1 15 15 O 1.21286 * 119.99800 * 354.69671 * 14 12 2 16 16 C 1.50700 * 119.99942 * 174.69856 * 14 12 2 17 17 C 1.53002 * 112.84790 * 74.96675 * 16 14 12 18 18 N 1.46905 * 109.47268 * 57.26532 * 17 16 14 19 19 C 1.53782 * 113.61316 * 206.15698 * 16 14 12 20 20 C 1.53955 * 87.01675 * 89.23259 * 19 16 14 21 21 C 1.53772 * 113.61608 * 303.76781 * 16 14 12 22 22 H 1.08996 * 109.47791 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46916 * 300.00133 * 1 2 3 24 24 H 1.09005 * 109.47383 * 59.99427 * 1 2 3 25 25 H 0.97002 * 119.99725 * 179.97438 * 7 6 4 26 26 H 1.08992 * 109.47016 * 275.43147 * 13 12 2 27 27 H 1.08997 * 109.46662 * 35.43264 * 13 12 2 28 28 H 1.09002 * 109.46982 * 155.43046 * 13 12 2 29 29 H 1.09000 * 109.46936 * 177.26665 * 17 16 14 30 30 H 1.09004 * 109.46556 * 297.26716 * 17 16 14 31 31 H 1.00894 * 110.99686 * 61.11481 * 18 17 16 32 32 H 1.00900 * 110.99420 * 185.06101 * 18 17 16 33 33 H 1.09000 * 113.61219 * 203.75024 * 19 16 14 34 34 H 1.08998 * 113.61687 * 334.65276 * 19 16 14 35 35 H 1.09007 * 113.53733 * 270.81024 * 20 19 16 36 36 H 1.09002 * 113.66998 * 139.93038 * 20 19 16 37 37 H 1.09003 * 113.61336 * 25.34575 * 21 16 14 38 38 H 1.08995 * 113.61754 * 156.16472 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1455 -2.2877 3.6037 10 1 3.1466 -0.1874 4.8164 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0357 -2.0834 15 8 3.0071 1.1498 -1.9425 16 6 3.3936 -0.7763 -3.2504 17 6 2.3713 -1.0896 -4.3448 18 7 1.7533 0.1594 -4.8097 19 6 4.6897 -0.1417 -3.7817 20 6 5.4419 -1.0241 -2.7689 21 6 4.2458 -1.9881 -2.8383 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.7088 1.1613 3.4844 26 1 2.3607 -2.7372 -0.8912 27 1 0.6510 -2.2760 -1.0705 28 1 1.7177 -2.3098 -2.4950 29 1 2.8716 -1.5802 -5.1797 30 1 1.6011 -1.7490 -3.9444 31 1 2.4447 0.7806 -5.2022 32 1 1.0164 -0.0270 -5.4733 33 1 4.9036 -0.3907 -4.8211 34 1 4.7694 0.9258 -3.5761 35 1 5.5688 -0.5553 -1.7930 36 1 6.3672 -1.4474 -3.1597 37 1 3.9677 -2.4092 -1.8721 38 1 4.3369 -2.7435 -3.6187 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168500978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:10 Heat of formation + Delta-G solvation = -33.782027 kcal Electronic energy + Delta-G solvation = -18586.569004 eV Core-core repulsion = 15849.882848 eV Total energy + Delta-G solvation = -2736.686157 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.73755 -38.64349 -36.99631 -34.89976 -34.63776 -31.46309 -28.22573 -27.73415 -27.29004 -26.39715 -24.35204 -22.89172 -21.24254 -19.23355 -18.38048 -17.44260 -17.24738 -16.89530 -16.41296 -16.24999 -15.37771 -15.24469 -14.89985 -14.49452 -14.16020 -13.92085 -13.59305 -13.55385 -13.18556 -12.96334 -12.81042 -12.72093 -12.60183 -12.30468 -12.17991 -12.10281 -11.81346 -11.22601 -11.16127 -11.06155 -10.59078 -10.36472 -9.47208 -9.21578 -8.13909 -6.31137 1.39699 1.40941 1.52784 1.98394 2.34637 2.54535 3.13113 3.41256 3.53685 3.75147 3.90037 4.01091 4.11122 4.35611 4.49305 4.60665 4.73508 4.76857 4.80157 4.81377 4.89640 4.91647 5.01143 5.07033 5.08610 5.21927 5.26040 5.45605 5.50951 5.66526 5.72072 6.08083 6.17928 6.30114 6.67526 6.78042 6.97054 7.35538 7.62266 8.90609 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030657 B = 0.007679 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.122016 B = 3645.239217 C = 3981.022564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.264 3.736 3 H 0.001 0.999 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.599 5.599 13 C 0.080 3.920 14 C 0.535 3.465 15 O -0.606 6.606 16 C -0.105 4.105 17 C 0.084 3.916 18 N -0.867 5.867 19 C -0.115 4.115 20 C -0.144 4.144 21 C -0.120 4.120 22 H 0.047 0.953 23 H 0.066 0.934 24 H 0.015 0.985 25 H 0.264 0.736 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.345 0.655 32 H 0.353 0.647 33 H 0.120 0.880 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.301 -10.138 -14.804 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.161 3.839 3 H 0.019 0.981 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.329 5.329 13 C -0.062 4.062 14 C 0.325 3.675 15 O -0.488 6.488 16 C -0.109 4.109 17 C -0.047 4.047 18 N -0.399 5.399 19 C -0.152 4.152 20 C -0.181 4.181 21 C -0.158 4.158 22 H 0.066 0.934 23 H 0.085 0.915 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.158 0.842 32 H 0.167 0.833 33 H 0.138 0.862 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.086 -9.333 -13.817 17.168 hybrid contribution 0.330 0.099 0.443 0.561 sum 4.416 -9.235 -13.374 16.842 Atomic orbital electron populations 1.21842 0.97531 0.99870 0.99609 1.18451 0.91486 0.91912 0.82020 0.98055 1.21604 1.31705 1.12904 0.91127 0.92162 1.25789 0.95134 0.95681 1.02147 1.70050 1.37479 1.24014 1.24304 0.85382 0.78243 0.78483 0.78757 1.18757 1.21144 1.19882 1.48032 1.49437 1.13091 1.22294 1.22009 1.00944 0.80994 1.02221 1.20470 0.77562 0.86492 0.82999 1.90563 1.63229 1.18265 1.76777 1.22016 0.96041 0.98690 0.94132 1.21847 0.95873 0.91704 0.95235 1.58453 1.17315 1.15958 1.48210 1.22904 0.92908 0.99107 1.00300 1.22809 0.98973 0.97864 0.98503 1.23178 0.93886 0.95444 1.03261 0.93439 0.91521 0.96618 0.92688 0.92748 0.91888 0.88480 0.90925 0.90048 0.84238 0.83279 0.86207 0.93415 0.93951 0.88266 0.91623 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.71 8.93 71.98 0.64 -6.07 16 2 C 0.26 14.57 2.63 44.24 0.12 14.69 16 3 H 0.00 0.10 6.91 -2.39 -0.02 0.08 16 4 C -0.53 -30.22 8.37 25.60 0.21 -30.00 16 5 H 0.06 3.30 7.49 -2.91 -0.02 3.28 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.91 11.32 21.45 0.24 -54.67 16 8 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 N -0.60 -26.89 2.75 -826.80 -2.27 -29.16 16 13 C 0.08 2.71 8.25 127.77 1.05 3.76 16 14 C 0.54 23.50 5.98 87.66 0.52 24.03 16 15 O -0.61 -33.16 15.43 -3.05 -0.05 -33.21 16 16 C -0.11 -3.06 0.42 -52.40 -0.02 -3.08 16 17 C 0.08 1.85 5.84 86.30 0.50 2.35 16 18 N -0.87 -21.46 9.24 -186.70 -1.72 -23.18 16 19 C -0.11 -3.02 6.88 31.18 0.21 -2.80 16 20 C -0.14 -3.76 7.81 31.18 0.24 -3.51 16 21 C -0.12 -2.81 6.29 31.12 0.20 -2.61 16 22 H 0.05 2.21 6.70 -2.39 -0.02 2.19 16 23 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 24 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 26 H 0.05 1.76 6.91 -2.39 -0.02 1.74 16 27 H 0.06 2.14 6.45 -2.39 -0.02 2.13 16 28 H 0.10 2.48 3.84 -2.39 -0.01 2.47 16 29 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 30 H 0.08 1.76 5.66 -2.39 -0.01 1.75 16 31 H 0.34 8.11 8.79 -89.70 -0.79 7.33 16 32 H 0.35 6.65 9.08 -89.69 -0.81 5.84 16 33 H 0.12 2.14 8.09 -2.39 -0.02 2.12 16 34 H 0.05 1.60 7.40 -2.39 -0.02 1.58 16 35 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.78 5.80 -2.39 -0.01 1.77 16 38 H 0.13 1.90 8.10 -2.39 -0.02 1.88 16 Total: -1.00 -75.35 294.44 1.84 -73.51 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -0.52 Total: 22.67 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 4.14 Total: -2.14 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -3.75 Total: -107.01 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.05 Total: -33.21 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -75.35 1.84 -73.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168500978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.725 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds