Wall clock time and date at job start Mon Mar 30 2020 03:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47226 * 2 1 4 4 C 1.47250 * 120.07094 * 270.01825 * 3 2 1 5 5 C 1.52891 * 108.31971 * 249.92064 * 4 3 2 6 6 C 1.51683 * 110.89182 * 274.31069 * 5 4 3 7 7 N 1.45752 * 113.82353 * 66.85578 * 6 5 4 8 8 C 1.46905 * 110.99684 * 167.33368 * 7 6 5 9 9 H 1.08991 * 109.47571 * 299.99909 * 8 7 6 10 10 C 1.53000 * 109.47101 * 60.00245 * 8 7 6 11 11 C 1.50706 * 109.46887 * 179.97438 * 8 7 6 12 12 H 1.07996 * 119.99772 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99514 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00472 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99750 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.46684 * 59.99901 * 15 13 11 17 17 H 1.48494 * 109.47325 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46968 * 300.00216 * 15 13 11 19 19 C 1.46880 * 112.44178 * 292.35113 * 7 6 5 20 20 C 1.33610 * 120.07807 * 89.99819 * 3 2 1 21 21 O 1.21281 * 119.88435 * 0.53446 * 20 3 2 22 22 H 1.09006 * 109.47156 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47280 * 300.00467 * 1 2 3 24 24 H 1.09000 * 109.47283 * 60.00441 * 1 2 3 25 25 H 1.08994 * 109.47137 * 239.99214 * 2 1 3 26 26 H 1.09002 * 109.46781 * 119.99660 * 2 1 3 27 27 H 1.09002 * 109.67926 * 9.70513 * 4 3 2 28 28 H 1.09001 * 109.67507 * 130.24216 * 4 3 2 29 29 H 1.09008 * 109.01932 * 154.02571 * 5 4 3 30 30 H 1.08998 * 109.27914 * 34.77049 * 5 4 3 31 31 H 1.09002 * 108.59356 * 305.77460 * 6 5 4 32 32 H 1.09001 * 108.58920 * 187.93144 * 6 5 4 33 33 H 1.08999 * 109.47254 * 179.97438 * 10 8 7 34 34 H 1.09006 * 109.46951 * 299.99953 * 10 8 7 35 35 H 1.09005 * 109.47368 * 59.99334 * 10 8 7 36 36 H 0.96996 * 120.00240 * 180.02562 * 14 13 11 37 37 H 1.08996 * 109.60294 * 205.54519 * 19 7 6 38 38 H 1.08996 * 109.59756 * 326.02746 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2639 2.0770 -1.2743 5 6 3.7731 2.2562 -1.4409 6 6 4.2488 3.5152 -0.7415 7 7 4.1321 3.4620 0.7104 8 6 4.8734 4.5636 1.3388 9 1 5.9273 4.4924 1.0701 10 6 4.3118 5.9003 0.8502 11 6 4.7293 4.4761 2.8364 12 1 4.1459 3.6814 3.2772 13 6 5.3424 5.4107 3.6437 14 7 6.0525 6.3788 3.1069 15 14 5.1633 5.3027 5.5000 16 1 5.7081 4.0054 5.9751 17 1 5.9127 6.4162 6.1353 18 1 3.7272 5.4000 5.8651 19 6 2.7341 3.4442 1.1603 20 6 2.2415 2.0126 1.1562 21 8 2.0484 1.4370 2.2061 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.8700 1.4827 -2.0988 28 1 1.7779 3.0525 -1.2594 29 1 4.0075 2.3255 -2.5033 30 1 4.2870 1.3937 -1.0164 31 1 3.6624 4.3584 -1.1065 32 1 5.2944 3.6825 -1.0001 33 1 4.8615 6.7178 1.3169 34 1 4.4156 5.9638 -0.2330 35 1 3.2578 5.9716 1.1190 36 1 6.4841 7.0360 3.6748 37 1 2.6695 3.8502 2.1697 38 1 2.1245 4.0425 0.4832 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190839576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:31 Heat of formation + Delta-G solvation = -26.578379 kcal Electronic energy + Delta-G solvation = -18466.264256 eV Core-core repulsion = 15729.890472 eV Total energy + Delta-G solvation = -2736.373783 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.94618 -37.17113 -35.75842 -33.33067 -31.76861 -30.37840 -28.77218 -26.64155 -25.24965 -24.54803 -22.90028 -21.29678 -19.40871 -18.47822 -16.87850 -16.39007 -16.10084 -14.96910 -14.68721 -14.10200 -13.96712 -13.83890 -13.56426 -13.12017 -12.71497 -12.41550 -12.29185 -11.98460 -11.87327 -11.68174 -11.26124 -11.16253 -10.90173 -10.75834 -10.71804 -10.56702 -10.33226 -10.01182 -9.84308 -9.23104 -8.88482 -8.41194 -8.37330 -7.25821 -6.01643 -4.05468 3.17309 3.35585 3.37976 3.40204 3.46714 4.44035 4.80172 4.92129 5.08656 5.10962 5.30523 5.35135 5.37645 5.44337 5.53217 5.69217 5.80457 5.84221 5.88013 5.96768 6.08214 6.21696 6.31780 6.47608 6.56064 6.71636 6.80257 6.84993 7.05255 7.42890 7.63761 7.79347 7.84134 8.02771 8.30982 8.55290 8.74745 9.01635 9.60342 11.05159 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030040 B = 0.007631 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.862940 B = 3668.195295 C = 4373.741539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.615 5.615 4 C 0.114 3.886 5 C -0.138 4.138 6 C 0.057 3.943 7 N -0.530 5.530 8 C 0.217 3.783 9 H 0.045 0.955 10 C -0.172 4.172 11 C -0.509 4.509 12 H 0.068 0.932 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.048 3.952 20 C 0.530 3.470 21 O -0.548 6.548 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.010 0.990 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.123 0.877 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 -7.111 -11.113 15.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.013 4.013 3 N -0.349 5.349 4 C -0.009 4.009 5 C -0.177 4.177 6 C -0.072 4.072 7 N -0.256 5.256 8 C 0.111 3.889 9 H 0.062 0.938 10 C -0.231 4.231 11 C -0.547 4.547 12 H 0.086 0.914 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.083 4.083 20 C 0.318 3.682 21 O -0.424 6.424 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.029 0.971 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.141 0.859 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.424 -7.686 -10.340 14.869 hybrid contribution -0.377 0.801 0.523 1.028 sum -7.801 -6.885 -9.817 14.305 Atomic orbital electron populations 1.22132 0.96414 1.01700 1.02132 1.21345 0.93906 0.83286 1.02734 1.48042 1.66526 1.13739 1.06613 1.21752 0.96359 0.97389 0.85359 1.21845 0.95436 1.00249 1.00126 1.21554 1.01037 0.95147 0.89447 1.61155 1.09783 1.49489 1.05157 1.19342 0.92867 0.82950 0.93694 0.93756 1.22437 1.00023 1.04278 0.96351 1.21178 1.31795 1.11547 0.90201 0.91397 1.24895 0.95001 0.95180 0.98865 1.69867 1.33216 1.15056 1.35169 0.86574 0.78279 0.77554 0.85157 1.20125 1.21419 1.20192 1.22406 0.90446 0.90715 1.04765 1.21059 0.75164 0.89466 0.82530 1.90631 1.52252 1.68008 1.31540 0.92031 0.92255 0.92913 0.91185 0.90051 0.90338 0.91174 0.90971 0.90655 0.95621 0.91252 0.89142 0.97100 0.95423 0.92909 0.85884 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 10.24 37.16 0.38 -1.47 16 2 C 0.11 1.42 6.08 -4.04 -0.02 1.39 16 3 N -0.61 -9.37 2.47 -173.19 -0.43 -9.80 16 4 C 0.11 1.39 5.93 -3.69 -0.02 1.36 16 5 C -0.14 -1.80 5.83 -27.45 -0.16 -1.96 16 6 C 0.06 0.95 4.21 -5.11 -0.02 0.93 16 7 N -0.53 -11.19 4.38 -230.86 -1.01 -12.20 16 8 C 0.22 5.34 2.36 -68.86 -0.16 5.17 16 9 H 0.04 1.20 8.07 -51.93 -0.42 0.78 16 10 C -0.17 -3.98 8.39 37.16 0.31 -3.67 16 11 C -0.51 -13.99 7.49 -34.44 -0.26 -14.25 16 12 H 0.07 1.94 6.65 -52.49 -0.35 1.60 16 13 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 14 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 15 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.05 0.97 3.87 -4.65 -0.02 0.95 16 20 C 0.53 10.47 7.19 -11.16 -0.08 10.38 16 21 O -0.55 -12.79 16.63 5.56 0.09 -12.70 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.71 8.03 -51.93 -0.42 0.30 16 26 H 0.08 1.22 7.40 -51.93 -0.38 0.83 16 27 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 28 H 0.07 0.85 6.76 -51.93 -0.35 0.50 16 29 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 30 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 31 H 0.03 0.42 6.55 -51.93 -0.34 0.08 16 32 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 33 H 0.09 2.34 6.07 -51.93 -0.31 2.03 16 34 H 0.01 0.21 6.67 -51.93 -0.35 -0.14 16 35 H 0.03 0.61 7.32 -51.93 -0.38 0.23 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.12 2.89 5.70 -51.93 -0.30 2.59 16 38 H 0.04 0.78 6.59 -51.93 -0.34 0.44 16 LS Contribution 293.12 15.07 4.42 4.42 Total: -1.00 -30.61 293.12 -7.48 -38.09 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.01 Total: -0.54 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -0.15 Total: 0.47 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.81 Total: -46.57 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.61 -7.48 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190839576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.515 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds