Wall clock time and date at job start Mon Mar 30 2020 03:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47226 * 2 1 4 4 C 1.47250 * 120.07094 * 270.01825 * 3 2 1 5 5 C 1.52891 * 108.31971 * 249.92064 * 4 3 2 6 6 C 1.51683 * 110.89182 * 274.31069 * 5 4 3 7 7 N 1.45752 * 113.82353 * 66.85578 * 6 5 4 8 8 C 1.46905 * 110.99684 * 167.33368 * 7 6 5 9 9 H 1.08991 * 109.47571 * 299.99909 * 8 7 6 10 10 C 1.53000 * 109.47101 * 60.00245 * 8 7 6 11 11 C 1.50706 * 109.46887 * 179.97438 * 8 7 6 12 12 H 1.07996 * 119.99772 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99514 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00472 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99750 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.46684 * 59.99901 * 15 13 11 17 17 H 1.48494 * 109.47325 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46968 * 300.00216 * 15 13 11 19 19 C 1.46880 * 112.44178 * 292.35113 * 7 6 5 20 20 C 1.33610 * 120.07807 * 89.99819 * 3 2 1 21 21 O 1.21281 * 119.88435 * 0.53446 * 20 3 2 22 22 H 1.09006 * 109.47156 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47280 * 300.00467 * 1 2 3 24 24 H 1.09000 * 109.47283 * 60.00441 * 1 2 3 25 25 H 1.08994 * 109.47137 * 239.99214 * 2 1 3 26 26 H 1.09002 * 109.46781 * 119.99660 * 2 1 3 27 27 H 1.09002 * 109.67926 * 9.70513 * 4 3 2 28 28 H 1.09001 * 109.67507 * 130.24216 * 4 3 2 29 29 H 1.09008 * 109.01932 * 154.02571 * 5 4 3 30 30 H 1.08998 * 109.27914 * 34.77049 * 5 4 3 31 31 H 1.09002 * 108.59356 * 305.77460 * 6 5 4 32 32 H 1.09001 * 108.58920 * 187.93144 * 6 5 4 33 33 H 1.08999 * 109.47254 * 179.97438 * 10 8 7 34 34 H 1.09006 * 109.46951 * 299.99953 * 10 8 7 35 35 H 1.09005 * 109.47368 * 59.99334 * 10 8 7 36 36 H 0.96996 * 120.00240 * 180.02562 * 14 13 11 37 37 H 1.08996 * 109.60294 * 205.54519 * 19 7 6 38 38 H 1.08996 * 109.59756 * 326.02746 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2639 2.0770 -1.2743 5 6 3.7731 2.2562 -1.4409 6 6 4.2488 3.5152 -0.7415 7 7 4.1321 3.4620 0.7104 8 6 4.8734 4.5636 1.3388 9 1 5.9273 4.4924 1.0701 10 6 4.3118 5.9003 0.8502 11 6 4.7293 4.4761 2.8364 12 1 4.1459 3.6814 3.2772 13 6 5.3424 5.4107 3.6437 14 7 6.0525 6.3788 3.1069 15 14 5.1633 5.3027 5.5000 16 1 5.7081 4.0054 5.9751 17 1 5.9127 6.4162 6.1353 18 1 3.7272 5.4000 5.8651 19 6 2.7341 3.4442 1.1603 20 6 2.2415 2.0126 1.1562 21 8 2.0484 1.4370 2.2061 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.8700 1.4827 -2.0988 28 1 1.7779 3.0525 -1.2594 29 1 4.0075 2.3255 -2.5033 30 1 4.2870 1.3937 -1.0164 31 1 3.6624 4.3584 -1.1065 32 1 5.2944 3.6825 -1.0001 33 1 4.8615 6.7178 1.3169 34 1 4.4156 5.9638 -0.2330 35 1 3.2578 5.9716 1.1190 36 1 6.4841 7.0360 3.6748 37 1 2.6695 3.8502 2.1697 38 1 2.1245 4.0425 0.4832 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190839576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:31 Heat of formation + Delta-G solvation = -47.643922 kcal Electronic energy + Delta-G solvation = -18467.177726 eV Core-core repulsion = 15729.890472 eV Total energy + Delta-G solvation = -2737.287254 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36916 -38.80439 -37.14992 -35.06558 -33.27325 -31.65445 -30.52037 -28.06339 -27.18370 -26.02091 -24.00563 -22.85051 -21.00225 -19.86271 -18.37624 -17.99334 -17.76357 -16.79901 -16.15585 -15.65599 -15.46437 -15.12414 -14.83469 -14.62497 -14.05583 -13.87611 -13.79716 -13.45382 -13.23077 -13.10353 -12.88509 -12.73932 -12.67823 -12.37480 -12.12573 -12.03254 -11.89506 -11.74212 -11.48959 -10.93261 -10.80993 -10.50251 -9.64655 -8.89760 -8.14418 -6.23871 1.39413 1.40410 1.49137 1.64739 2.15460 2.41051 3.14594 3.32177 3.75512 4.00995 4.06342 4.11263 4.29275 4.37742 4.51671 4.53346 4.64576 4.67202 4.78434 4.83340 4.86727 4.92521 4.96665 5.06696 5.09380 5.12573 5.30749 5.41383 5.52949 5.70120 5.71976 5.78262 6.13184 6.38345 6.44606 6.76246 6.88153 7.28684 7.44922 8.90943 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030040 B = 0.007631 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.862940 B = 3668.195295 C = 4373.741539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.104 3.896 3 N -0.604 5.604 4 C 0.109 3.891 5 C -0.128 4.128 6 C 0.051 3.949 7 N -0.545 5.545 8 C 0.223 3.777 9 H 0.015 0.985 10 C -0.155 4.155 11 C -0.524 4.524 12 H 0.047 0.953 13 C 0.021 3.979 14 N -0.913 5.913 15 Si 0.948 3.052 16 H -0.280 1.280 17 H -0.277 1.277 18 H -0.275 1.275 19 C 0.055 3.945 20 C 0.525 3.475 21 O -0.598 6.598 22 H 0.083 0.917 23 H 0.027 0.973 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.052 0.948 27 H 0.126 0.874 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.027 0.973 36 H 0.263 0.737 37 H 0.083 0.917 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 -7.899 -13.660 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.017 4.017 3 N -0.336 5.336 4 C -0.013 4.013 5 C -0.167 4.167 6 C -0.077 4.077 7 N -0.271 5.271 8 C 0.116 3.884 9 H 0.033 0.967 10 C -0.215 4.215 11 C -0.562 4.562 12 H 0.065 0.935 13 C -0.178 4.178 14 N -0.552 5.552 15 Si 0.775 3.225 16 H -0.205 1.205 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.076 4.076 20 C 0.312 3.688 21 O -0.479 6.479 22 H 0.102 0.898 23 H 0.047 0.953 24 H 0.092 0.908 25 H 0.128 0.872 26 H 0.070 0.930 27 H 0.144 0.856 28 H 0.094 0.906 29 H 0.133 0.867 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.511 -8.483 -12.951 17.667 hybrid contribution -0.041 1.003 1.224 1.583 sum -8.551 -7.480 -11.727 16.328 Atomic orbital electron populations 1.22064 0.94853 1.03061 1.01577 1.21589 0.95156 0.81745 1.03253 1.48115 1.64544 1.14550 1.06402 1.22101 0.95871 0.98458 0.84827 1.21812 0.95814 0.97208 1.01854 1.21746 1.01255 0.97950 0.86747 1.61006 1.09974 1.48114 1.07973 1.19049 0.91897 0.84955 0.92499 0.96748 1.22200 0.99301 1.02219 0.97760 1.21368 1.31541 1.11013 0.92262 0.93506 1.25522 0.94876 0.95031 1.02408 1.69960 1.33609 1.15389 1.36261 0.85764 0.78237 0.77497 0.81046 1.20550 1.20149 1.20062 1.22180 0.90496 0.91898 1.03051 1.20903 0.75295 0.89205 0.83352 1.90602 1.54804 1.68834 1.33654 0.89796 0.95328 0.90820 0.87204 0.92959 0.85610 0.90592 0.86722 0.92302 0.94460 0.91898 0.91912 0.94335 0.95350 0.92763 0.89874 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.24 71.98 0.74 -2.35 16 2 C 0.10 2.42 6.08 86.38 0.53 2.95 16 3 N -0.60 -17.06 2.47 -820.88 -2.03 -19.09 16 4 C 0.11 2.14 5.93 86.20 0.51 2.65 16 5 C -0.13 -2.86 5.83 30.13 0.18 -2.69 16 6 C 0.05 1.60 4.21 86.09 0.36 1.96 16 7 N -0.55 -23.10 4.38 -884.32 -3.88 -26.97 16 8 C 0.22 11.22 2.36 44.17 0.10 11.33 16 9 H 0.01 0.82 8.07 -2.39 -0.02 0.80 16 10 C -0.16 -7.22 8.39 71.98 0.60 -6.62 16 11 C -0.52 -29.87 7.49 25.60 0.19 -29.68 16 12 H 0.05 2.83 6.65 -2.91 -0.02 2.81 16 13 C 0.02 1.19 5.30 84.66 0.45 1.64 16 14 N -0.91 -52.41 11.32 21.45 0.24 -52.17 16 15 Si 0.95 45.81 29.54 68.60 2.03 47.84 16 16 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 19 C 0.05 2.25 3.87 85.78 0.33 2.58 16 20 C 0.52 20.82 7.19 88.06 0.63 21.45 16 21 O -0.60 -29.03 16.63 -3.03 -0.05 -29.08 16 22 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 23 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.11 1.71 8.03 -2.39 -0.02 1.69 16 26 H 0.05 1.54 7.40 -2.39 -0.02 1.52 16 27 H 0.13 1.41 7.92 -2.39 -0.02 1.39 16 28 H 0.08 1.48 6.76 -2.39 -0.02 1.46 16 29 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.06 1.56 8.05 -2.39 -0.02 1.54 16 31 H 0.04 1.10 6.55 -2.39 -0.02 1.08 16 32 H 0.06 2.05 7.93 -2.39 -0.02 2.03 16 33 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 34 H 0.04 1.53 6.67 -2.38 -0.02 1.51 16 35 H 0.03 1.26 7.32 -2.38 -0.02 1.25 16 36 H 0.26 14.41 8.31 -92.71 -0.77 13.63 16 37 H 0.08 4.09 5.70 -2.39 -0.01 4.08 16 38 H 0.07 2.36 6.59 -2.39 -0.02 2.34 16 Total: -1.00 -70.45 293.12 1.97 -68.48 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.03 Total: 7.78 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 4.62 Total: 3.22 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -5.66 Total: -98.24 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.05 Total: -29.08 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -70.45 1.97 -68.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190839576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.839 kcal (2) G-P(sol) polarization free energy of solvation -70.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds