Wall clock time and date at job start Mon Mar 30 2020 03:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46546 * 2 1 4 4 C 1.47254 * 120.07717 * 90.00486 * 3 2 1 5 5 C 1.53105 * 108.40196 * 110.03100 * 4 3 2 6 6 C 1.51686 * 110.75939 * 85.59342 * 5 4 3 7 7 N 1.45758 * 113.93755 * 293.22778 * 6 5 4 8 8 C 1.46901 * 110.99512 * 302.69548 * 7 6 5 9 9 H 1.09000 * 109.47680 * 54.99922 * 8 7 6 10 10 C 1.53001 * 109.47161 * 294.99563 * 8 7 6 11 11 C 1.50701 * 109.46664 * 175.00107 * 8 7 6 12 12 H 1.07999 * 120.00328 * 359.97438 * 11 8 7 13 13 C 1.37883 * 119.99802 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00156 * 359.97438 * 13 11 8 15 15 Si 1.86796 * 119.99922 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47400 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47234 * 119.99756 * 15 13 11 18 18 H 1.48500 * 109.47182 * 240.00144 * 15 13 11 19 19 C 1.46926 * 112.43002 * 67.71498 * 7 6 5 20 20 C 1.33613 * 120.07918 * 270.01973 * 3 2 1 21 21 O 1.21278 * 119.88262 * 359.45676 * 20 3 2 22 22 H 1.09001 * 109.47141 * 299.99346 * 1 2 3 23 23 H 1.09000 * 109.47153 * 60.00254 * 1 2 3 24 24 H 1.09009 * 109.47119 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46990 * 240.00123 * 2 1 3 26 26 H 1.09000 * 109.47153 * 119.99746 * 2 1 3 27 27 H 1.09000 * 109.67919 * 350.30154 * 4 3 2 28 28 H 1.08994 * 109.67613 * 229.76282 * 4 3 2 29 29 H 1.09004 * 109.22336 * 325.26390 * 5 4 3 30 30 H 1.09005 * 109.22360 * 205.91798 * 5 4 3 31 31 H 1.09004 * 108.58677 * 54.37315 * 6 5 4 32 32 H 1.08991 * 108.59257 * 172.07356 * 6 5 4 33 33 H 1.08998 * 109.47157 * 180.02562 * 10 8 7 34 34 H 1.09000 * 109.47117 * 300.00704 * 10 8 7 35 35 H 1.08995 * 109.47168 * 60.00182 * 10 8 7 36 36 H 0.96990 * 120.00179 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.61223 * 154.46150 * 19 7 6 38 38 H 1.08993 * 109.74337 * 34.04124 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2642 2.0770 1.2743 5 6 3.7753 2.2566 1.4430 6 6 4.2489 3.5151 0.7410 7 7 4.1320 3.4621 -0.7109 8 6 4.8751 2.3188 -1.2574 9 1 4.5374 1.4016 -0.7749 10 6 6.3705 2.5111 -0.9970 11 6 4.6317 2.2248 -2.7416 12 1 3.9889 2.9422 -3.2300 13 6 5.2297 1.2227 -3.4762 14 7 6.0129 0.3494 -2.8816 15 14 4.9275 1.1057 -5.3158 16 1 4.0150 2.1985 -5.7381 17 1 6.2186 1.2313 -6.0386 18 1 4.3080 -0.2061 -5.6332 19 6 2.7333 3.4445 -1.1604 20 6 2.2410 2.0128 -1.1562 21 8 2.0478 1.4372 -2.2061 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8708 1.4827 2.0989 28 1 1.7780 3.0524 1.2597 29 1 4.2889 1.3940 1.0183 30 1 4.0120 2.3273 2.5047 31 1 3.6625 4.3582 1.1063 32 1 5.2941 3.6848 0.9995 33 1 6.9220 1.6631 -1.4029 34 1 6.7083 3.4283 -1.4795 35 1 6.5466 2.5792 0.0764 36 1 6.4332 -0.3557 -3.3982 37 1 2.6682 3.8506 -2.1697 38 1 2.1220 4.0433 -0.4852 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190839595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:34 Heat of formation + Delta-G solvation = -17.654998 kcal Electronic energy + Delta-G solvation = -19197.149088 eV Core-core repulsion = 16461.162252 eV Total energy + Delta-G solvation = -2735.986836 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06500 -36.74854 -35.44090 -33.01239 -31.41240 -30.29348 -29.12011 -26.48790 -24.78501 -24.23723 -22.61091 -21.95849 -18.88568 -18.17423 -16.77740 -16.34009 -15.72946 -15.01693 -14.39110 -14.13255 -14.02122 -13.63505 -13.26513 -12.96147 -12.85988 -12.18106 -12.04688 -11.71944 -11.66554 -11.51033 -11.07057 -10.95258 -10.79187 -10.64653 -10.49096 -10.43625 -10.15947 -9.97343 -9.68398 -9.03894 -8.74412 -8.28079 -8.05953 -7.20868 -5.86000 -3.85706 3.43709 3.50423 3.54613 3.57659 3.61136 4.59828 4.99496 5.05431 5.16541 5.24998 5.45531 5.49594 5.52208 5.58310 5.65488 5.77146 5.88746 5.93438 5.95985 6.06695 6.27523 6.37389 6.43798 6.50130 6.56609 6.87133 7.07053 7.09544 7.14078 7.49268 7.72634 7.95685 8.07937 8.12959 8.36364 8.61935 9.10264 9.15698 9.78182 11.21840 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.011397 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.848766 B = 2456.183821 C = 3117.929397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.622 5.622 4 C 0.118 3.882 5 C -0.182 4.182 6 C 0.053 3.947 7 N -0.521 5.521 8 C 0.204 3.796 9 H 0.012 0.988 10 C -0.131 4.131 11 C -0.485 4.485 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.900 5.900 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.289 1.289 18 H -0.288 1.288 19 C 0.060 3.940 20 C 0.499 3.501 21 O -0.513 6.513 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.034 0.966 35 H 0.006 0.994 36 H 0.256 0.744 37 H 0.102 0.898 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 2.831 10.549 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 N -0.358 5.358 4 C -0.005 4.005 5 C -0.222 4.222 6 C -0.076 4.076 7 N -0.246 5.246 8 C 0.099 3.901 9 H 0.030 0.970 10 C -0.189 4.189 11 C -0.523 4.523 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.541 5.541 15 Si 0.727 3.273 16 H -0.198 1.198 17 H -0.216 1.216 18 H -0.214 1.214 19 C -0.071 4.071 20 C 0.285 3.715 21 O -0.385 6.385 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.053 0.947 35 H 0.025 0.975 36 H 0.066 0.934 37 H 0.120 0.880 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.090 2.794 9.700 12.336 hybrid contribution -0.385 -0.982 -0.477 1.157 sum -7.475 1.813 9.223 12.010 Atomic orbital electron populations 1.22114 0.96711 1.01456 1.01772 1.21269 0.93440 0.83488 1.02813 1.48029 1.67660 1.13827 1.06311 1.21684 0.95826 0.97133 0.85895 1.22459 0.96253 1.02442 1.01066 1.21747 1.01627 0.95275 0.88988 1.62053 1.08819 1.47121 1.06579 1.19460 0.90302 0.85309 0.95066 0.97020 1.21807 0.99018 1.02210 0.95855 1.21072 1.27393 1.12228 0.91621 0.91964 1.24772 0.95036 0.95451 0.98387 1.69885 1.32239 1.16601 1.35367 0.86433 0.77286 0.77941 0.85667 1.19785 1.21613 1.21410 1.22426 0.90075 0.91516 1.03082 1.21457 0.76494 0.90588 0.82928 1.90667 1.49158 1.67718 1.30938 0.93196 0.92372 0.92249 0.89837 0.91655 0.90659 0.91440 0.90199 0.91240 0.92442 0.90893 0.89584 0.94692 0.97511 0.93437 0.87986 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.84 6.08 -4.04 -0.02 1.82 16 3 N -0.62 -10.99 2.36 -173.05 -0.41 -11.40 16 4 C 0.12 1.62 5.93 -3.58 -0.02 1.60 16 5 C -0.18 -2.73 5.45 -27.34 -0.15 -2.88 16 6 C 0.05 0.87 4.89 -5.11 -0.02 0.85 16 7 N -0.52 -10.84 4.71 -230.82 -1.09 -11.92 16 8 C 0.20 5.09 1.22 -68.86 -0.08 5.01 16 9 H 0.01 0.34 5.18 -51.93 -0.27 0.07 16 10 C -0.13 -3.20 8.85 37.16 0.33 -2.87 16 11 C -0.48 -13.70 6.04 -34.44 -0.21 -13.91 16 12 H 0.06 1.81 6.26 -52.49 -0.33 1.48 16 13 C 0.06 1.85 5.30 -17.82 -0.09 1.76 16 14 N -0.90 -26.72 11.32 55.43 0.63 -26.09 16 15 Si 0.90 23.38 29.54 -169.99 -5.02 18.35 16 16 H -0.27 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 19 C 0.06 1.19 5.10 -4.62 -0.02 1.17 16 20 C 0.50 10.72 4.76 -11.16 -0.05 10.67 16 21 O -0.51 -13.30 15.09 5.56 0.08 -13.22 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.08 1.65 7.40 -51.93 -0.38 1.27 16 26 H 0.06 0.91 8.03 -51.93 -0.42 0.50 16 27 H 0.07 0.84 7.92 -51.93 -0.41 0.43 16 28 H 0.07 0.83 6.76 -51.93 -0.35 0.48 16 29 H 0.08 1.50 6.21 -51.93 -0.32 1.18 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 32 H 0.07 1.22 6.54 -51.93 -0.34 0.88 16 33 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.01 0.13 6.59 -51.93 -0.34 -0.21 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.10 2.18 6.91 -51.93 -0.36 1.82 16 38 H 0.07 1.06 6.68 -51.93 -0.35 0.72 16 LS Contribution 285.56 15.07 4.30 4.30 Total: -1.00 -32.35 285.56 -7.32 -39.67 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.84 Total: -1.09 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 0.03 Total: 1.39 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.87 Total: -49.41 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.35 -7.32 -39.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190839595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.014 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds