Wall clock time and date at job start Mon Mar 30 2020 03:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46546 * 2 1 4 4 C 1.47254 * 120.07717 * 90.00486 * 3 2 1 5 5 C 1.53105 * 108.40196 * 110.03100 * 4 3 2 6 6 C 1.51686 * 110.75939 * 85.59342 * 5 4 3 7 7 N 1.45758 * 113.93755 * 293.22778 * 6 5 4 8 8 C 1.46901 * 110.99512 * 302.69548 * 7 6 5 9 9 H 1.09000 * 109.47680 * 54.99922 * 8 7 6 10 10 C 1.53001 * 109.47161 * 294.99563 * 8 7 6 11 11 C 1.50701 * 109.46664 * 175.00107 * 8 7 6 12 12 H 1.07999 * 120.00328 * 359.97438 * 11 8 7 13 13 C 1.37883 * 119.99802 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00156 * 359.97438 * 13 11 8 15 15 Si 1.86796 * 119.99922 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47400 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47234 * 119.99756 * 15 13 11 18 18 H 1.48500 * 109.47182 * 240.00144 * 15 13 11 19 19 C 1.46926 * 112.43002 * 67.71498 * 7 6 5 20 20 C 1.33613 * 120.07918 * 270.01973 * 3 2 1 21 21 O 1.21278 * 119.88262 * 359.45676 * 20 3 2 22 22 H 1.09001 * 109.47141 * 299.99346 * 1 2 3 23 23 H 1.09000 * 109.47153 * 60.00254 * 1 2 3 24 24 H 1.09009 * 109.47119 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46990 * 240.00123 * 2 1 3 26 26 H 1.09000 * 109.47153 * 119.99746 * 2 1 3 27 27 H 1.09000 * 109.67919 * 350.30154 * 4 3 2 28 28 H 1.08994 * 109.67613 * 229.76282 * 4 3 2 29 29 H 1.09004 * 109.22336 * 325.26390 * 5 4 3 30 30 H 1.09005 * 109.22360 * 205.91798 * 5 4 3 31 31 H 1.09004 * 108.58677 * 54.37315 * 6 5 4 32 32 H 1.08991 * 108.59257 * 172.07356 * 6 5 4 33 33 H 1.08998 * 109.47157 * 180.02562 * 10 8 7 34 34 H 1.09000 * 109.47117 * 300.00704 * 10 8 7 35 35 H 1.08995 * 109.47168 * 60.00182 * 10 8 7 36 36 H 0.96990 * 120.00179 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.61223 * 154.46150 * 19 7 6 38 38 H 1.08993 * 109.74337 * 34.04124 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2642 2.0770 1.2743 5 6 3.7753 2.2566 1.4430 6 6 4.2489 3.5151 0.7410 7 7 4.1320 3.4621 -0.7109 8 6 4.8751 2.3188 -1.2574 9 1 4.5374 1.4016 -0.7749 10 6 6.3705 2.5111 -0.9970 11 6 4.6317 2.2248 -2.7416 12 1 3.9889 2.9422 -3.2300 13 6 5.2297 1.2227 -3.4762 14 7 6.0129 0.3494 -2.8816 15 14 4.9275 1.1057 -5.3158 16 1 4.0150 2.1985 -5.7381 17 1 6.2186 1.2313 -6.0386 18 1 4.3080 -0.2061 -5.6332 19 6 2.7333 3.4445 -1.1604 20 6 2.2410 2.0128 -1.1562 21 8 2.0478 1.4372 -2.2061 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8708 1.4827 2.0989 28 1 1.7780 3.0524 1.2597 29 1 4.2889 1.3940 1.0183 30 1 4.0120 2.3273 2.5047 31 1 3.6625 4.3582 1.1063 32 1 5.2941 3.6848 0.9995 33 1 6.9220 1.6631 -1.4029 34 1 6.7083 3.4283 -1.4795 35 1 6.5466 2.5792 0.0764 36 1 6.4332 -0.3557 -3.3982 37 1 2.6682 3.8506 -2.1697 38 1 2.1220 4.0433 -0.4852 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190839595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:33 Heat of formation + Delta-G solvation = -41.110800 kcal Electronic energy + Delta-G solvation = -19198.166208 eV Core-core repulsion = 16461.162252 eV Total energy + Delta-G solvation = -2737.003956 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.59461 -38.39170 -36.96338 -34.95006 -32.91453 -31.75776 -30.92087 -28.02756 -26.71940 -25.74633 -23.94441 -23.58015 -20.49709 -19.68230 -18.54026 -17.98711 -17.37551 -16.79980 -16.17063 -15.87368 -15.43380 -15.09375 -14.76265 -14.43979 -14.36136 -13.79742 -13.38913 -13.34451 -13.10782 -13.02402 -12.85548 -12.69008 -12.58649 -12.25341 -12.20643 -11.98450 -11.93322 -11.85787 -11.41170 -10.82860 -10.64645 -10.43706 -9.50898 -8.89133 -8.08064 -6.10912 1.32011 1.35895 1.46887 1.95048 2.23426 2.45201 3.23673 3.42568 3.76433 3.97383 4.06523 4.19917 4.26877 4.36311 4.51561 4.57377 4.63733 4.73778 4.76969 4.82883 4.91140 4.96235 5.02110 5.08069 5.14870 5.22856 5.27259 5.35324 5.56835 5.77558 5.79479 5.87232 6.25991 6.31993 6.60206 6.80270 6.95959 7.53372 7.55326 8.98457 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.011397 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.848766 B = 2456.183821 C = 3117.929397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.108 3.892 3 N -0.618 5.618 4 C 0.112 3.888 5 C -0.175 4.175 6 C 0.045 3.955 7 N -0.529 5.529 8 C 0.216 3.784 9 H -0.015 1.015 10 C -0.120 4.120 11 C -0.485 4.485 12 H 0.046 0.954 13 C 0.015 3.985 14 N -0.923 5.923 15 Si 0.943 3.057 16 H -0.275 1.275 17 H -0.276 1.276 18 H -0.294 1.294 19 C 0.062 3.938 20 C 0.491 3.509 21 O -0.576 6.576 22 H 0.078 0.922 23 H 0.031 0.969 24 H 0.077 0.923 25 H 0.034 0.966 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.036 0.964 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.255 0.745 37 H 0.075 0.925 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 4.031 13.328 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 N -0.353 5.353 4 C -0.009 4.009 5 C -0.215 4.215 6 C -0.083 4.083 7 N -0.253 5.253 8 C 0.109 3.891 9 H 0.003 0.997 10 C -0.178 4.178 11 C -0.524 4.524 12 H 0.064 0.936 13 C -0.182 4.182 14 N -0.565 5.565 15 Si 0.771 3.229 16 H -0.200 1.200 17 H -0.201 1.201 18 H -0.221 1.221 19 C -0.069 4.069 20 C 0.278 3.722 21 O -0.453 6.453 22 H 0.097 0.903 23 H 0.050 0.950 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.112 0.888 27 H 0.131 0.869 28 H 0.112 0.888 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.173 4.016 12.539 15.497 hybrid contribution -0.079 -1.332 -1.230 1.815 sum -8.253 2.684 11.309 14.255 Atomic orbital electron populations 1.21995 0.94132 1.02771 1.01801 1.21375 0.95506 0.82829 1.01743 1.48158 1.66052 1.14178 1.06887 1.22071 0.95285 0.98838 0.84724 1.22386 0.96660 0.99527 1.02906 1.21946 1.02588 0.97609 0.86139 1.61888 1.09000 1.44717 1.09700 1.19098 0.91012 0.85953 0.93035 0.99734 1.21617 0.98304 1.00470 0.97445 1.21303 1.26022 1.11291 0.93739 0.93592 1.25405 0.95490 0.95737 1.01593 1.69987 1.33204 1.17106 1.36230 0.85731 0.77511 0.77256 0.82443 1.19989 1.20125 1.22090 1.22392 0.90189 0.91252 1.03046 1.21813 0.75909 0.91268 0.83221 1.90631 1.52171 1.69095 1.33392 0.90299 0.94973 0.90402 0.94759 0.88844 0.86938 0.88796 0.94520 0.87172 0.88456 0.91128 0.92644 0.95122 0.94653 0.93619 0.90658 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 10.24 71.98 0.74 -3.00 16 2 C 0.11 3.45 6.08 86.38 0.53 3.98 16 3 N -0.62 -20.89 2.36 -820.46 -1.94 -22.83 16 4 C 0.11 2.55 5.93 86.27 0.51 3.07 16 5 C -0.17 -4.57 5.45 30.20 0.16 -4.41 16 6 C 0.05 1.32 4.89 86.09 0.42 1.74 16 7 N -0.53 -21.23 4.71 -884.18 -4.17 -25.40 16 8 C 0.22 10.88 1.22 44.17 0.05 10.94 16 9 H -0.01 -0.82 5.18 -2.39 -0.01 -0.83 16 10 C -0.12 -5.90 8.85 71.98 0.64 -5.26 16 11 C -0.48 -28.26 6.04 25.60 0.15 -28.10 16 12 H 0.05 2.78 6.26 -2.91 -0.02 2.76 16 13 C 0.01 0.89 5.30 84.66 0.45 1.34 16 14 N -0.92 -56.63 11.32 21.45 0.24 -56.39 16 15 Si 0.94 49.43 29.54 68.60 2.03 51.45 16 16 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 17 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 18 H -0.29 -15.61 7.11 99.48 0.71 -14.90 16 19 C 0.06 2.39 5.10 85.77 0.44 2.82 16 20 C 0.49 21.16 4.76 88.06 0.42 21.58 16 21 O -0.58 -31.26 15.09 -3.02 -0.05 -31.31 16 22 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.03 1.42 7.40 -2.39 -0.02 1.40 16 26 H 0.09 2.41 8.03 -2.39 -0.02 2.39 16 27 H 0.11 1.80 7.92 -2.39 -0.02 1.78 16 28 H 0.09 1.72 6.76 -2.39 -0.02 1.71 16 29 H 0.04 1.31 6.21 -2.39 -0.01 1.29 16 30 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.10 2.14 7.79 -2.38 -0.02 2.12 16 32 H 0.07 2.12 6.54 -2.39 -0.02 2.10 16 33 H 0.05 3.07 6.07 -2.39 -0.01 3.05 16 34 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.03 1.48 6.59 -2.39 -0.02 1.46 16 36 H 0.25 15.03 8.31 -92.72 -0.77 14.26 16 37 H 0.08 3.27 6.91 -2.39 -0.02 3.25 16 38 H 0.11 3.22 6.68 -2.39 -0.02 3.20 16 Total: -1.00 -75.46 285.56 1.67 -73.79 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.04 Total: 5.98 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 4.51 Total: 4.69 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -5.86 Total: -104.62 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.05 Total: -31.31 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.03 Total: 51.45 kcal Total: -75.46 1.67 -73.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190839595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.684 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds