Wall clock time and date at job start Mon Mar 30 2020 04:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 119.99937 * 2 1 4 4 C 1.50702 * 119.99878 * 180.28365 * 2 1 3 5 5 C 1.53003 * 109.46878 * 179.72241 * 4 2 1 6 6 N 1.46901 * 109.46635 * 180.02562 * 5 4 2 7 7 C 1.46956 * 110.99836 * 293.79304 * 6 5 4 8 8 C 1.53057 * 109.36567 * 176.81557 * 7 6 5 9 9 N 1.46954 * 109.36119 * 58.40464 * 8 7 6 10 10 C 1.46896 * 110.99874 * 176.81587 * 9 8 7 11 11 C 1.50700 * 109.46820 * 293.79708 * 10 9 8 12 12 H 1.07997 * 120.00408 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99864 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00059 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99760 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46917 * 90.00138 * 15 13 11 17 17 H 1.48501 * 109.46839 * 209.99792 * 15 13 11 18 18 H 1.48500 * 109.47315 * 330.00138 * 15 13 11 19 19 C 1.46956 * 110.87869 * 300.67769 * 9 8 7 20 20 C 1.46961 * 110.99789 * 170.00054 * 6 5 4 21 21 H 1.09004 * 109.46986 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47178 * 119.99485 * 1 2 3 23 23 H 1.09006 * 109.46629 * 239.99681 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72098 * 4 2 1 25 25 H 1.08994 * 109.46990 * 59.71952 * 4 2 1 26 26 H 1.08998 * 109.46943 * 299.99345 * 5 4 2 27 27 H 1.08994 * 109.47116 * 59.99734 * 5 4 2 28 28 H 1.08999 * 109.49195 * 296.78328 * 7 6 5 29 29 H 1.09002 * 109.48564 * 56.84885 * 7 6 5 30 30 H 1.09001 * 109.48449 * 298.43650 * 8 7 6 31 31 H 1.09000 * 109.48760 * 178.37211 * 8 7 6 32 32 H 1.09003 * 109.47586 * 53.79607 * 10 9 8 33 33 H 1.09002 * 109.47633 * 173.80005 * 10 9 8 34 34 H 0.96996 * 119.99924 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.49132 * 299.35172 * 19 9 8 36 36 H 1.09007 * 109.50376 * 179.30259 * 19 9 8 37 37 H 1.09001 * 109.48531 * 303.15189 * 20 6 5 38 38 H 1.09000 * 109.48854 * 63.21653 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0065 5 6 3.7647 -1.0255 -0.0121 6 7 4.4992 -2.2977 -0.0190 7 6 4.2884 -3.0342 1.2351 8 6 5.0034 -4.3853 1.1565 9 7 6.4357 -4.1651 0.9128 10 6 7.1702 -5.4372 0.9059 11 6 7.1338 -6.0457 2.2841 12 1 6.6164 -5.5384 3.0849 13 6 7.7611 -7.2502 2.5227 14 7 8.3907 -7.8683 1.5474 15 14 7.7165 -8.0041 4.2313 16 1 6.5259 -8.8832 4.3535 17 1 8.9477 -8.8048 4.4512 18 1 7.6405 -6.9237 5.2473 19 6 6.6465 -3.4285 -0.3413 20 6 5.9316 -2.0775 -0.2627 21 1 -0.3633 1.0277 0.0005 22 1 -0.3633 -0.5137 -0.8900 23 1 -0.3633 -0.5139 0.8900 24 1 2.0009 -1.8789 0.8832 25 1 1.9934 -1.8744 -0.8967 26 1 4.0243 -0.4518 -0.9018 27 1 4.0318 -0.4561 0.8782 28 1 4.6913 -2.4575 2.0677 29 1 3.2212 -3.1958 1.3870 30 1 4.5818 -4.9728 0.3409 31 1 4.8726 -4.9211 2.0966 32 1 6.7065 -6.1207 0.1946 33 1 8.2053 -5.2577 0.6153 34 1 8.8316 -8.7158 1.7152 35 1 6.2436 -4.0053 -1.1739 36 1 7.7137 -3.2670 -0.4936 37 1 6.0623 -1.5416 -1.2028 38 1 6.3531 -1.4900 0.5529 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198935212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:04 Heat of formation + Delta-G solvation = -33.004786 kcal Electronic energy + Delta-G solvation = -17298.290359 eV Core-core repulsion = 14561.637906 eV Total energy + Delta-G solvation = -2736.652453 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.77541 -38.58285 -35.33535 -32.71611 -31.68755 -30.43540 -29.83212 -27.48351 -25.05275 -23.22169 -22.34759 -21.25125 -19.61936 -19.16149 -16.46932 -16.29668 -15.90088 -15.32310 -15.12779 -14.57391 -14.39678 -14.19802 -13.93969 -13.64761 -13.21246 -12.94245 -12.47787 -12.34859 -12.10832 -11.87829 -11.63387 -11.31239 -11.08300 -10.83200 -10.70519 -10.61176 -10.33586 -10.26144 -9.84264 -9.68436 -9.16425 -8.43669 -8.14186 -7.21136 -6.02108 -4.03574 1.76847 3.31636 3.37959 3.42301 3.68781 4.32680 4.42741 4.74063 4.84694 4.92121 4.99603 5.11974 5.25452 5.33237 5.36258 5.47897 5.59287 5.64294 5.75515 5.81021 5.86132 5.92871 5.94846 6.07871 6.23202 6.45888 6.60694 6.68589 7.19727 7.20913 7.33409 7.36632 7.39073 7.80854 8.10396 8.22412 8.56469 9.04035 9.60629 11.08807 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042896 B = 0.004387 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.583132 B = 6381.627113 C = 6796.473680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.355 3.645 3 O -0.462 6.462 4 C -0.170 4.170 5 C 0.064 3.936 6 N -0.541 5.541 7 C 0.054 3.946 8 C 0.068 3.932 9 N -0.539 5.539 10 C 0.193 3.807 11 C -0.507 4.507 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.057 3.943 20 C 0.062 3.938 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.086 0.914 32 H -0.008 1.008 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 11.911 -3.799 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.230 3.770 3 O -0.336 6.336 4 C -0.208 4.208 5 C -0.064 4.064 6 N -0.266 5.266 7 C -0.074 4.074 8 C -0.061 4.061 9 N -0.264 5.264 10 C 0.068 3.932 11 C -0.546 4.546 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.072 4.072 20 C -0.066 4.066 21 H 0.098 0.902 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.118 0.882 25 H 0.125 0.875 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.009 0.991 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.234 12.298 -3.835 18.468 hybrid contribution -0.022 -0.680 0.849 1.088 sum -13.256 11.618 -2.987 17.877 Atomic orbital electron populations 1.22323 0.94510 1.04763 1.04627 1.24681 0.91998 0.90312 0.69966 1.90416 1.72105 1.35315 1.35785 1.22144 0.96172 0.97071 1.05424 1.21829 0.92032 0.90976 1.01585 1.62187 1.10091 1.18937 1.35374 1.22316 0.99512 0.95778 0.89800 1.21987 0.88533 0.94013 1.01585 1.62275 1.08527 1.24269 1.31367 1.19703 0.93134 0.83315 0.97024 1.21159 1.33591 1.04432 0.95412 0.91943 1.24994 0.95421 0.97050 0.97152 1.69959 1.35396 1.16716 1.31752 0.86508 0.77387 0.79151 0.84432 1.20734 1.21260 1.19797 1.22065 0.99216 0.93563 0.92393 1.22145 0.86699 0.97655 1.00121 0.90219 0.88920 0.88964 0.88209 0.87514 0.90648 0.94483 0.94333 0.91138 0.95322 0.89598 0.99061 0.95227 0.92929 0.95137 0.90998 0.91176 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.24 10.26 36.01 0.37 -0.87 16 2 C 0.35 3.40 7.27 -29.03 -0.21 3.19 16 3 O -0.46 -6.25 16.71 6.00 0.10 -6.15 16 4 C -0.17 -1.63 5.57 -27.88 -0.16 -1.78 16 5 C 0.06 0.81 4.25 -3.82 -0.02 0.79 16 6 N -0.54 -8.06 4.71 -234.46 -1.10 -9.16 16 7 C 0.05 0.85 5.41 -3.76 -0.02 0.83 16 8 C 0.07 1.32 5.43 -3.77 -0.02 1.30 16 9 N -0.54 -11.87 4.70 -235.91 -1.11 -12.98 16 10 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 11 C -0.51 -14.29 8.47 -34.44 -0.29 -14.58 16 12 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 15 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 20 C 0.06 0.97 5.61 -3.77 -0.02 0.95 16 21 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 22 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.10 0.86 6.49 -51.93 -0.34 0.52 16 25 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 0.96 7.98 -51.93 -0.41 0.54 16 27 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.92 6.34 -51.93 -0.33 0.59 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.78 6.79 -51.93 -0.35 1.43 16 32 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 33 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.31 8.07 -51.92 -0.42 0.89 16 37 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 306.83 15.07 4.62 4.62 Total: -1.00 -31.75 306.83 -8.70 -40.45 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -6.42 Total: -4.71 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.51 Total: -2.59 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -1.48 Total: -48.21 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: 0.10 Total: -6.15 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.75 -8.70 -40.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198935212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.444 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds