Wall clock time and date at job start Mon Mar 30 2020 04:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 119.99937 * 2 1 4 4 C 1.50702 * 119.99878 * 180.28365 * 2 1 3 5 5 C 1.53003 * 109.46878 * 179.72241 * 4 2 1 6 6 N 1.46901 * 109.46635 * 180.02562 * 5 4 2 7 7 C 1.46956 * 110.99836 * 293.79304 * 6 5 4 8 8 C 1.53057 * 109.36567 * 176.81557 * 7 6 5 9 9 N 1.46954 * 109.36119 * 58.40464 * 8 7 6 10 10 C 1.46896 * 110.99874 * 176.81587 * 9 8 7 11 11 C 1.50700 * 109.46820 * 293.79708 * 10 9 8 12 12 H 1.07997 * 120.00408 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99864 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00059 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99760 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46917 * 90.00138 * 15 13 11 17 17 H 1.48501 * 109.46839 * 209.99792 * 15 13 11 18 18 H 1.48500 * 109.47315 * 330.00138 * 15 13 11 19 19 C 1.46956 * 110.87869 * 300.67769 * 9 8 7 20 20 C 1.46961 * 110.99789 * 170.00054 * 6 5 4 21 21 H 1.09004 * 109.46986 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47178 * 119.99485 * 1 2 3 23 23 H 1.09006 * 109.46629 * 239.99681 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72098 * 4 2 1 25 25 H 1.08994 * 109.46990 * 59.71952 * 4 2 1 26 26 H 1.08998 * 109.46943 * 299.99345 * 5 4 2 27 27 H 1.08994 * 109.47116 * 59.99734 * 5 4 2 28 28 H 1.08999 * 109.49195 * 296.78328 * 7 6 5 29 29 H 1.09002 * 109.48564 * 56.84885 * 7 6 5 30 30 H 1.09001 * 109.48449 * 298.43650 * 8 7 6 31 31 H 1.09000 * 109.48760 * 178.37211 * 8 7 6 32 32 H 1.09003 * 109.47586 * 53.79607 * 10 9 8 33 33 H 1.09002 * 109.47633 * 173.80005 * 10 9 8 34 34 H 0.96996 * 119.99924 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.49132 * 299.35172 * 19 9 8 36 36 H 1.09007 * 109.50376 * 179.30259 * 19 9 8 37 37 H 1.09001 * 109.48531 * 303.15189 * 20 6 5 38 38 H 1.09000 * 109.48854 * 63.21653 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0065 5 6 3.7647 -1.0255 -0.0121 6 7 4.4992 -2.2977 -0.0190 7 6 4.2884 -3.0342 1.2351 8 6 5.0034 -4.3853 1.1565 9 7 6.4357 -4.1651 0.9128 10 6 7.1702 -5.4372 0.9059 11 6 7.1338 -6.0457 2.2841 12 1 6.6164 -5.5384 3.0849 13 6 7.7611 -7.2502 2.5227 14 7 8.3907 -7.8683 1.5474 15 14 7.7165 -8.0041 4.2313 16 1 6.5259 -8.8832 4.3535 17 1 8.9477 -8.8048 4.4512 18 1 7.6405 -6.9237 5.2473 19 6 6.6465 -3.4285 -0.3413 20 6 5.9316 -2.0775 -0.2627 21 1 -0.3633 1.0277 0.0005 22 1 -0.3633 -0.5137 -0.8900 23 1 -0.3633 -0.5139 0.8900 24 1 2.0009 -1.8789 0.8832 25 1 1.9934 -1.8744 -0.8967 26 1 4.0243 -0.4518 -0.9018 27 1 4.0318 -0.4561 0.8782 28 1 4.6913 -2.4575 2.0677 29 1 3.2212 -3.1958 1.3870 30 1 4.5818 -4.9728 0.3409 31 1 4.8726 -4.9211 2.0966 32 1 6.7065 -6.1207 0.1946 33 1 8.2053 -5.2577 0.6153 34 1 8.8316 -8.7158 1.7152 35 1 6.2436 -4.0053 -1.1739 36 1 7.7137 -3.2670 -0.4936 37 1 6.0623 -1.5416 -1.2028 38 1 6.3531 -1.4900 0.5529 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198935212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:03 Heat of formation + Delta-G solvation = -56.113085 kcal Electronic energy + Delta-G solvation = -17299.292410 eV Core-core repulsion = 14561.637906 eV Total energy + Delta-G solvation = -2737.654504 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70475 -39.90143 -36.86403 -34.68311 -32.78551 -31.81503 -30.79737 -29.13495 -26.66931 -24.68271 -23.78608 -22.83942 -20.64411 -20.38760 -18.48781 -17.53699 -16.78107 -16.71569 -16.20116 -15.94747 -15.84933 -15.68086 -15.32817 -14.95559 -14.67077 -14.21474 -13.87991 -13.42396 -13.11850 -12.96594 -12.92103 -12.85655 -12.64711 -12.51587 -12.24880 -12.16063 -12.08290 -11.77136 -11.40734 -11.18055 -10.62110 -10.59316 -9.38310 -9.02834 -8.20728 -6.31433 1.05520 1.41483 1.43279 1.54900 2.40471 2.73579 3.11454 3.29800 3.41462 3.87011 3.97790 4.10575 4.18963 4.29152 4.36706 4.44059 4.47496 4.60394 4.68245 4.70944 4.77885 4.83706 4.94885 4.95914 5.01916 5.04205 5.09644 5.22690 5.26402 5.28334 5.63566 5.98762 6.02506 6.08384 6.34907 6.61161 6.62068 6.84567 7.38531 8.90642 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042896 B = 0.004387 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.583132 B = 6381.627113 C = 6796.473680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.360 3.640 3 O -0.510 6.510 4 C -0.167 4.167 5 C 0.066 3.934 6 N -0.542 5.542 7 C 0.065 3.935 8 C 0.068 3.932 9 N -0.548 5.548 10 C 0.209 3.791 11 C -0.524 4.524 12 H 0.063 0.937 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.972 3.028 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.056 3.944 20 C 0.069 3.931 21 H 0.075 0.925 22 H 0.115 0.885 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.074 0.926 27 H 0.025 0.975 28 H 0.031 0.969 29 H 0.105 0.895 30 H 0.020 0.980 31 H 0.070 0.930 32 H -0.039 1.039 33 H 0.002 0.998 34 H 0.265 0.735 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.729 12.350 -3.044 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.239 3.761 3 O -0.387 6.387 4 C -0.204 4.204 5 C -0.061 4.061 6 N -0.267 5.267 7 C -0.063 4.063 8 C -0.060 4.060 9 N -0.273 5.273 10 C 0.082 3.918 11 C -0.562 4.562 12 H 0.081 0.919 13 C -0.197 4.197 14 N -0.576 5.576 15 Si 0.796 3.204 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.073 4.073 20 C -0.059 4.059 21 H 0.094 0.906 22 H 0.133 0.867 23 H 0.131 0.869 24 H 0.133 0.867 25 H 0.141 0.859 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.123 0.877 30 H 0.038 0.962 31 H 0.088 0.912 32 H -0.021 1.021 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.306 12.751 -3.088 20.159 hybrid contribution 0.616 -0.808 0.547 1.154 sum -14.691 11.943 -2.542 19.102 Atomic orbital electron populations 1.22326 0.91408 1.05216 1.06628 1.25130 0.93633 0.89367 0.67989 1.90418 1.73266 1.36717 1.38340 1.22167 0.93748 0.97604 1.06921 1.21844 0.93896 0.89431 1.00968 1.62205 1.09560 1.20245 1.34732 1.22214 1.00858 0.93275 0.89944 1.22000 0.87290 0.96433 1.00325 1.62211 1.09873 1.21920 1.33329 1.19351 0.91931 0.84770 0.95713 1.21447 1.33794 1.04990 0.96003 0.91855 1.25946 0.94716 0.97460 1.01569 1.70090 1.36100 1.17220 1.34168 0.85350 0.77737 0.78322 0.79004 1.19548 1.20801 1.18926 1.22137 0.99752 0.94735 0.90662 1.22070 0.87135 0.95459 1.01249 0.90641 0.86692 0.86869 0.86680 0.85878 0.90765 0.95693 0.95076 0.87675 0.96164 0.91151 1.02092 0.98003 0.92643 0.95747 0.91231 0.88692 0.94868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.74 10.26 71.24 0.73 -1.01 16 2 C 0.36 6.04 7.27 29.10 0.21 6.25 16 3 O -0.51 -13.24 16.71 -1.46 -0.02 -13.26 16 4 C -0.17 -2.67 5.57 29.85 0.17 -2.50 16 5 C 0.07 1.54 4.25 86.30 0.37 1.90 16 6 N -0.54 -15.16 4.71 -895.69 -4.22 -19.38 16 7 C 0.07 1.93 5.41 86.31 0.47 2.39 16 8 C 0.07 2.66 5.43 86.31 0.47 3.13 16 9 N -0.55 -24.63 4.70 -900.27 -4.23 -28.87 16 10 C 0.21 11.46 4.72 85.56 0.40 11.87 16 11 C -0.52 -30.09 8.47 25.60 0.22 -29.88 16 12 H 0.06 3.55 7.13 -2.91 -0.02 3.53 16 13 C 0.00 0.06 5.46 84.66 0.46 0.52 16 14 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 15 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 C 0.06 2.11 5.61 86.31 0.48 2.59 16 20 C 0.07 2.10 5.61 86.31 0.48 2.58 16 21 H 0.07 0.77 8.12 -2.38 -0.02 0.75 16 22 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 24 H 0.12 1.52 6.49 -2.38 -0.02 1.50 16 25 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.75 7.98 -2.39 -0.02 1.74 16 27 H 0.02 0.65 8.08 -2.39 -0.02 0.63 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.11 2.40 6.34 -2.39 -0.02 2.39 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 2.94 6.79 -2.39 -0.02 2.92 16 32 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 33 H 0.00 0.11 8.03 -2.39 -0.02 0.09 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 2.61 8.07 -2.38 -0.02 2.59 16 37 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -70.21 306.83 -0.69 -70.90 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.01 Total: 3.03 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 4.46 Total: -2.16 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -8.17 Total: -104.84 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.02 Total: -13.26 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -70.21 -0.69 -70.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198935212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.789 kcal (2) G-P(sol) polarization free energy of solvation -70.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds