Wall clock time and date at job start Mon Mar 30 2020 03:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46529 * 2 1 4 4 C 1.50702 * 109.47491 * 239.99905 * 2 1 3 5 5 H 1.07994 * 120.00048 * 274.05586 * 4 2 1 6 6 C 1.37880 * 119.99711 * 94.33141 * 4 2 1 7 7 N 1.31511 * 119.99899 * 181.92569 * 6 4 2 8 8 Si 1.86802 * 120.00011 * 1.93381 * 6 4 2 9 9 H 1.48495 * 109.47123 * 85.07574 * 8 6 4 10 10 H 1.48501 * 109.46909 * 205.07329 * 8 6 4 11 11 H 1.48501 * 109.47061 * 325.07045 * 8 6 4 12 12 N 1.46505 * 109.47284 * 119.99696 * 2 1 3 13 13 C 1.34778 * 119.99961 * 275.00378 * 12 2 1 14 14 O 1.21280 * 120.00172 * 0.02562 * 13 12 2 15 15 C 1.50693 * 119.99891 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.47141 * 300.00144 * 15 13 12 17 17 C 1.52997 * 109.47317 * 59.99967 * 15 13 12 18 18 C 1.52995 * 109.47344 * 179.97438 * 17 15 13 19 19 C 1.53004 * 109.47359 * 300.00070 * 18 17 15 20 20 C 1.53002 * 109.46707 * 59.99935 * 19 18 17 21 21 H 1.09002 * 109.47192 * 60.00129 * 20 19 18 22 22 N 1.46902 * 109.46907 * 180.02562 * 20 19 18 23 23 C 1.52995 * 109.47264 * 300.00123 * 20 19 18 24 24 H 1.09003 * 109.47245 * 64.00446 * 1 2 3 25 25 H 1.09008 * 109.46988 * 183.99515 * 1 2 3 26 26 H 1.08997 * 109.47578 * 303.99588 * 1 2 3 27 27 H 0.97001 * 120.00368 * 180.02562 * 7 6 4 28 28 H 0.96992 * 119.99994 * 95.00084 * 12 2 1 29 29 H 1.08993 * 109.47433 * 300.00213 * 17 15 13 30 30 H 1.09002 * 109.46870 * 60.00012 * 17 15 13 31 31 H 1.09007 * 109.47563 * 180.02562 * 18 17 15 32 32 H 1.09002 * 109.47020 * 60.00235 * 18 17 15 33 33 H 1.08993 * 109.47110 * 300.00195 * 19 18 17 34 34 H 1.09001 * 109.47387 * 179.97438 * 19 18 17 35 35 H 1.00903 * 110.99560 * 299.99583 * 22 20 19 36 36 H 1.00894 * 111.00140 * 63.95514 * 22 20 19 37 37 H 1.09002 * 109.47020 * 300.00110 * 23 20 19 38 38 H 1.09005 * 109.47192 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1501 -1.7839 -1.2239 6 6 2.3472 0.0108 -2.3626 7 7 2.7496 -0.6124 -3.4485 8 14 2.2026 1.8732 -2.3539 9 1 3.4496 2.4640 -1.8054 10 1 1.9928 2.3598 -3.7411 11 1 1.0502 2.2762 -1.5084 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8581 1.1585 2.4118 15 6 2.6488 -0.7286 3.5878 16 1 1.9759 -1.5505 3.8326 17 6 4.0513 -1.2796 3.3224 18 6 4.5610 -2.0003 4.5719 19 6 4.6126 -1.0167 5.7427 20 6 3.2101 -0.4658 6.0081 21 1 2.5374 -1.2876 6.2534 22 7 3.2598 0.4791 7.1319 23 6 2.7004 0.2550 4.7586 24 1 -0.3634 0.4504 -0.9237 25 1 -0.3633 -1.0252 0.0716 26 1 -0.3634 0.5746 0.8520 27 1 2.9714 -0.1050 -4.2449 28 1 2.2491 -1.6316 1.1527 29 1 4.0146 -1.9799 2.4881 30 1 4.7241 -0.4577 3.0775 31 1 5.5604 -2.3925 4.3830 32 1 3.8882 -2.8221 4.8172 33 1 5.2853 -0.1950 5.4975 34 1 4.9754 -1.5303 6.6331 35 1 3.5937 0.0270 7.9699 36 1 3.8261 1.2824 6.9041 37 1 3.3732 1.0768 4.5133 38 1 1.7014 0.6478 4.9478 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218939224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:15 Heat of formation + Delta-G solvation = -70.564986 kcal Electronic energy + Delta-G solvation = -17791.844578 eV Core-core repulsion = 15053.563392 eV Total energy + Delta-G solvation = -2738.281186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.80081 -37.83087 -34.85627 -33.71251 -32.29162 -31.05379 -29.55108 -27.84008 -25.30023 -23.71364 -21.97444 -20.83412 -19.92207 -19.40229 -17.38683 -16.20342 -15.95833 -15.34454 -15.19906 -14.48810 -14.34120 -13.81959 -13.78802 -13.28507 -12.85716 -12.62920 -12.51962 -12.36427 -12.10943 -11.48746 -11.30281 -11.15654 -11.11298 -10.81217 -10.66131 -10.57862 -10.51675 -10.46090 -9.87573 -9.16865 -9.00261 -8.78296 -8.71042 -8.04193 -6.22754 -4.26305 3.25931 3.33681 3.34778 3.42444 3.97134 4.33277 4.39398 4.66046 4.73034 4.97057 5.10094 5.15824 5.18541 5.33649 5.39459 5.48170 5.54516 5.68178 5.88862 5.96435 5.98702 6.12470 6.17281 6.34828 6.38761 6.45328 6.56347 6.70294 6.96149 7.01149 7.20615 7.29270 7.40823 7.58852 8.16135 8.60832 8.77874 9.04174 9.39755 10.89074 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036870 B = 0.005786 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.238443 B = 4838.286120 C = 5079.270849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.048 0.952 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.891 5.891 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.704 5.704 13 C 0.505 3.495 14 O -0.559 6.559 15 C -0.106 4.106 16 H 0.092 0.908 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.154 4.154 20 C 0.090 3.910 21 H 0.079 0.921 22 N -0.845 5.845 23 C -0.089 4.089 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.029 0.971 27 H 0.267 0.733 28 H 0.392 0.608 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.338 0.662 36 H 0.340 0.660 37 H 0.066 0.934 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -2.589 16.986 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.066 0.934 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.527 5.527 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.352 5.352 13 C 0.290 3.710 14 O -0.439 6.439 15 C -0.128 4.128 16 H 0.110 0.890 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.193 4.193 20 C -0.021 4.021 21 H 0.097 0.903 22 N -0.373 5.373 23 C -0.127 4.127 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.226 0.774 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.085 0.915 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.249 -1.650 16.693 16.924 hybrid contribution 1.181 0.224 -0.255 1.229 sum 3.430 -1.426 16.438 16.852 Atomic orbital electron populations 1.22235 0.98715 1.00061 0.99695 1.19083 0.90833 0.94276 0.82980 0.93404 1.21016 1.45157 0.95743 0.94836 0.90381 1.24928 0.93576 0.98577 0.95263 1.69878 1.44102 1.36231 1.02501 0.86897 0.79883 0.85829 0.77297 1.19928 1.21198 1.18449 1.46600 1.64885 1.13807 1.09877 1.20503 0.78234 0.87466 0.84847 1.90635 1.51669 1.16280 1.85306 1.21306 0.98068 0.99134 0.94272 0.89025 1.21545 0.95017 1.00495 0.97990 1.21457 1.01277 0.97851 0.94519 1.22433 0.98674 0.99638 0.98572 1.21506 0.95027 0.94552 0.91051 0.90264 1.58891 1.61558 1.11039 1.05816 1.21282 1.02912 0.97135 0.91379 0.92744 0.93650 0.95229 0.92276 0.77420 0.90835 0.91410 0.91767 0.91718 0.92000 0.92352 0.85021 0.84758 0.91477 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.44 37.16 0.35 -2.96 16 2 C 0.23 5.56 2.16 -69.08 -0.15 5.41 16 3 H 0.05 1.26 4.90 -51.93 -0.25 1.01 16 4 C -0.53 -14.27 9.05 -34.44 -0.31 -14.59 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 8 Si 0.87 21.78 26.72 -169.99 -4.54 17.23 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.26 -6.40 6.87 56.52 0.39 -6.01 16 12 N -0.70 -14.19 4.96 -54.93 -0.27 -14.46 16 13 C 0.50 9.71 7.12 -10.99 -0.08 9.63 16 14 O -0.56 -12.95 15.64 5.56 0.09 -12.86 16 15 C -0.11 -1.48 2.53 -91.78 -0.23 -1.71 16 16 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.11 -1.39 5.10 -26.74 -0.14 -1.52 16 18 C -0.11 -1.09 5.92 -26.73 -0.16 -1.24 16 19 C -0.15 -1.41 5.49 -26.73 -0.15 -1.56 16 20 C 0.09 0.94 3.25 -67.71 -0.22 0.72 16 21 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 22 N -0.85 -8.09 9.25 -4.67 -0.04 -8.13 16 23 C -0.09 -1.20 4.03 -26.73 -0.11 -1.31 16 24 H 0.05 1.23 7.90 -51.93 -0.41 0.82 16 25 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.39 6.96 8.01 -40.82 -0.33 6.64 16 29 H 0.07 0.90 7.56 -51.93 -0.39 0.51 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.34 2.54 9.04 -39.29 -0.36 2.18 16 36 H 0.34 3.07 8.98 -39.30 -0.35 2.72 16 37 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -31.23 303.41 -7.02 -38.25 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.31 Total: 7.86 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.29 Total: -6.96 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.46 Total: -48.10 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.54 Total: 17.23 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.23 -7.02 -38.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218939224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.311 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds