Wall clock time and date at job start Mon Mar 30 2020 03:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46529 * 2 1 4 4 C 1.50702 * 109.47491 * 239.99905 * 2 1 3 5 5 H 1.07994 * 120.00048 * 274.05586 * 4 2 1 6 6 C 1.37880 * 119.99711 * 94.33141 * 4 2 1 7 7 N 1.31511 * 119.99899 * 181.92569 * 6 4 2 8 8 Si 1.86802 * 120.00011 * 1.93381 * 6 4 2 9 9 H 1.48495 * 109.47123 * 85.07574 * 8 6 4 10 10 H 1.48501 * 109.46909 * 205.07329 * 8 6 4 11 11 H 1.48501 * 109.47061 * 325.07045 * 8 6 4 12 12 N 1.46505 * 109.47284 * 119.99696 * 2 1 3 13 13 C 1.34778 * 119.99961 * 275.00378 * 12 2 1 14 14 O 1.21280 * 120.00172 * 0.02562 * 13 12 2 15 15 C 1.50693 * 119.99891 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.47141 * 300.00144 * 15 13 12 17 17 C 1.52997 * 109.47317 * 59.99967 * 15 13 12 18 18 C 1.52995 * 109.47344 * 179.97438 * 17 15 13 19 19 C 1.53004 * 109.47359 * 300.00070 * 18 17 15 20 20 C 1.53002 * 109.46707 * 59.99935 * 19 18 17 21 21 H 1.09002 * 109.47192 * 60.00129 * 20 19 18 22 22 N 1.46902 * 109.46907 * 180.02562 * 20 19 18 23 23 C 1.52995 * 109.47264 * 300.00123 * 20 19 18 24 24 H 1.09003 * 109.47245 * 64.00446 * 1 2 3 25 25 H 1.09008 * 109.46988 * 183.99515 * 1 2 3 26 26 H 1.08997 * 109.47578 * 303.99588 * 1 2 3 27 27 H 0.97001 * 120.00368 * 180.02562 * 7 6 4 28 28 H 0.96992 * 119.99994 * 95.00084 * 12 2 1 29 29 H 1.08993 * 109.47433 * 300.00213 * 17 15 13 30 30 H 1.09002 * 109.46870 * 60.00012 * 17 15 13 31 31 H 1.09007 * 109.47563 * 180.02562 * 18 17 15 32 32 H 1.09002 * 109.47020 * 60.00235 * 18 17 15 33 33 H 1.08993 * 109.47110 * 300.00195 * 19 18 17 34 34 H 1.09001 * 109.47387 * 179.97438 * 19 18 17 35 35 H 1.00903 * 110.99560 * 299.99583 * 22 20 19 36 36 H 1.00894 * 111.00140 * 63.95514 * 22 20 19 37 37 H 1.09002 * 109.47020 * 300.00110 * 23 20 19 38 38 H 1.09005 * 109.47192 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1501 -1.7839 -1.2239 6 6 2.3472 0.0108 -2.3626 7 7 2.7496 -0.6124 -3.4485 8 14 2.2026 1.8732 -2.3539 9 1 3.4496 2.4640 -1.8054 10 1 1.9928 2.3598 -3.7411 11 1 1.0502 2.2762 -1.5084 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8581 1.1585 2.4118 15 6 2.6488 -0.7286 3.5878 16 1 1.9759 -1.5505 3.8326 17 6 4.0513 -1.2796 3.3224 18 6 4.5610 -2.0003 4.5719 19 6 4.6126 -1.0167 5.7427 20 6 3.2101 -0.4658 6.0081 21 1 2.5374 -1.2876 6.2534 22 7 3.2598 0.4791 7.1319 23 6 2.7004 0.2550 4.7586 24 1 -0.3634 0.4504 -0.9237 25 1 -0.3633 -1.0252 0.0716 26 1 -0.3634 0.5746 0.8520 27 1 2.9714 -0.1050 -4.2449 28 1 2.2491 -1.6316 1.1527 29 1 4.0146 -1.9799 2.4881 30 1 4.7241 -0.4577 3.0775 31 1 5.5604 -2.3925 4.3830 32 1 3.8882 -2.8221 4.8172 33 1 5.2853 -0.1950 5.4975 34 1 4.9754 -1.5303 6.6331 35 1 3.5937 0.0270 7.9699 36 1 3.8261 1.2824 6.9041 37 1 3.3732 1.0768 4.5133 38 1 1.7014 0.6478 4.9478 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218939224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:15 Heat of formation + Delta-G solvation = -94.020025 kcal Electronic energy + Delta-G solvation = -17792.861664 eV Core-core repulsion = 15053.563392 eV Total energy + Delta-G solvation = -2739.298272 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15983 -39.03644 -36.70376 -34.74316 -34.23581 -32.22181 -31.14547 -28.76960 -27.33862 -24.97350 -22.86630 -22.42077 -21.21302 -20.78948 -19.21256 -17.78397 -17.29300 -16.64728 -16.46059 -16.04862 -15.39098 -15.21108 -14.93145 -14.64646 -14.54471 -14.27780 -13.93518 -13.53851 -13.38137 -13.11889 -12.99846 -12.81732 -12.45730 -12.25271 -12.06515 -11.90057 -11.59630 -11.52778 -11.46159 -11.22211 -10.89145 -10.54191 -9.79791 -9.52509 -8.40279 -6.46117 1.26872 1.31575 1.42558 1.79346 2.25386 2.46706 3.02432 3.53508 3.70687 3.77638 4.03667 4.18757 4.23553 4.31845 4.43149 4.47673 4.54776 4.57429 4.69529 4.73585 4.81948 5.03495 5.07531 5.11765 5.15861 5.22521 5.26131 5.34868 5.36611 5.44510 5.49402 5.75656 6.11918 6.27807 6.58593 6.65354 6.92116 7.20205 7.48832 8.74710 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036870 B = 0.005786 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.238443 B = 4838.286120 C = 5079.270849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.233 3.767 3 H 0.025 0.975 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.035 3.965 7 N -0.929 5.929 8 Si 0.924 3.076 9 H -0.277 1.277 10 H -0.276 1.276 11 H -0.257 1.257 12 N -0.702 5.702 13 C 0.500 3.500 14 O -0.601 6.601 15 C -0.094 4.094 16 H 0.119 0.881 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.148 4.148 20 C 0.099 3.901 21 H 0.088 0.912 22 N -0.854 5.854 23 C -0.084 4.084 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.270 0.730 28 H 0.405 0.595 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.352 0.648 36 H 0.342 0.658 37 H 0.046 0.954 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 -3.366 18.970 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.129 3.871 3 H 0.043 0.957 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.166 4.166 7 N -0.568 5.568 8 Si 0.749 3.251 9 H -0.203 1.203 10 H -0.201 1.201 11 H -0.181 1.181 12 N -0.351 5.351 13 C 0.288 3.712 14 O -0.483 6.483 15 C -0.115 4.115 16 H 0.136 0.864 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.187 4.187 20 C -0.013 4.013 21 H 0.106 0.894 22 N -0.383 5.383 23 C -0.123 4.123 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.241 0.759 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.065 0.935 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.470 -2.454 18.704 19.025 hybrid contribution 1.109 0.439 -0.830 1.453 sum 3.579 -2.015 17.874 18.340 Atomic orbital electron populations 1.22126 0.97219 1.01094 0.99601 1.18849 0.91926 0.92978 0.83390 0.95676 1.21184 1.44236 0.94985 0.95875 0.92335 1.25560 0.93752 1.02124 0.95139 1.69965 1.45896 1.37715 1.03242 0.86098 0.79647 0.81645 0.77674 1.20261 1.20097 1.18145 1.46374 1.65066 1.14382 1.09289 1.21420 0.76956 0.87074 0.85744 1.90613 1.53293 1.18346 1.86038 1.21302 0.99454 0.99337 0.91442 0.86359 1.21552 0.93413 1.00104 0.99798 1.21444 1.02189 0.97958 0.92925 1.22387 0.97574 0.99454 0.99331 1.21382 0.95889 0.94357 0.89655 0.89357 1.58845 1.62060 1.11214 1.06188 1.21223 1.01370 0.96817 0.92882 0.93317 0.92116 0.94750 0.92018 0.75923 0.90778 0.93209 0.90589 0.90025 0.92726 0.90082 0.83414 0.84545 0.93466 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.19 9.44 71.98 0.68 -5.51 16 2 C 0.23 11.15 2.16 44.24 0.10 11.24 16 3 H 0.03 1.33 4.90 -2.39 -0.01 1.32 16 4 C -0.52 -28.41 9.05 25.60 0.23 -28.18 16 5 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 6 C 0.03 1.96 5.47 84.66 0.46 2.42 16 7 N -0.93 -55.39 13.96 21.45 0.30 -55.09 16 8 Si 0.92 45.12 26.72 68.60 1.83 46.95 16 9 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.26 -12.33 6.87 99.48 0.68 -11.65 16 12 N -0.70 -27.88 4.96 -446.09 -2.21 -30.09 16 13 C 0.50 19.00 7.12 87.65 0.62 19.62 16 14 O -0.60 -28.02 15.64 -3.03 -0.05 -28.07 16 15 C -0.09 -2.47 2.53 -11.54 -0.03 -2.50 16 16 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 17 C -0.11 -2.52 5.10 30.59 0.16 -2.36 16 18 C -0.11 -1.70 5.92 30.59 0.18 -1.52 16 19 C -0.15 -2.24 5.49 30.60 0.17 -2.08 16 20 C 0.10 1.80 3.25 44.91 0.15 1.94 16 21 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 22 N -0.85 -14.49 9.25 -168.68 -1.56 -16.05 16 23 C -0.08 -2.20 4.03 30.59 0.12 -2.07 16 24 H 0.05 2.15 7.90 -2.39 -0.02 2.13 16 25 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 26 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.41 13.96 8.01 -92.71 -0.74 13.22 16 29 H 0.07 1.68 7.56 -2.39 -0.02 1.66 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.35 4.29 9.04 -89.69 -0.81 3.48 16 36 H 0.34 5.66 8.98 -89.70 -0.81 4.85 16 37 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 38 H 0.05 1.64 8.10 -2.38 -0.02 1.62 16 Total: -1.00 -67.41 303.41 -0.17 -67.58 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -1.32 Total: 23.76 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 2.84 Total: -8.98 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -3.48 Total: -101.24 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.05 Total: -28.07 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.83 Total: 46.95 kcal Total: -67.41 -0.17 -67.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218939224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.438 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds