Wall clock time and date at job start Mon Mar 30 2020 03:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.47026 * 109.47491 * 2 1 4 4 C 1.33889 * 117.64307 * 275.87967 * 3 2 1 5 5 O 1.21012 * 119.39731 * 351.31032 * 4 3 2 6 6 C 1.50451 * 121.61626 * 170.58593 * 4 3 2 7 7 H 1.09223 * 109.48470 * 222.72858 * 6 4 3 8 8 C 1.50617 * 109.78164 * 102.86174 * 6 4 3 9 9 H 1.07997 * 120.00483 * 240.00388 * 8 6 4 10 10 C 1.37880 * 119.99785 * 60.00253 * 8 6 4 11 11 N 1.31510 * 120.00036 * 0.02562 * 10 8 6 12 12 Si 1.86807 * 120.00005 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46865 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47163 * 119.99733 * 12 10 8 15 15 H 1.48495 * 109.46951 * 240.00294 * 12 10 8 16 16 N 1.46651 * 109.19831 * 342.19497 * 6 4 3 17 17 C 1.47137 * 111.00332 * 178.11976 * 16 6 4 18 18 C 1.46506 * 112.18740 * 53.39915 * 16 6 4 19 19 C 1.45401 * 118.55401 * 96.46083 * 3 2 1 20 20 C 1.54136 * 108.27400 * 61.43716 * 19 3 2 21 21 C 1.53442 * 109.51142 * 303.31415 * 19 3 2 22 22 H 1.09000 * 109.47168 * 305.07985 * 1 2 3 23 23 H 1.09001 * 109.47062 * 65.07733 * 1 2 3 24 24 H 1.09004 * 109.47561 * 185.07813 * 1 2 3 25 25 H 1.08998 * 109.47170 * 239.99899 * 2 1 3 26 26 H 1.08997 * 109.46743 * 120.00313 * 2 1 3 27 27 H 0.97004 * 119.99992 * 180.02562 * 11 10 8 28 28 H 1.09003 * 109.47081 * 63.95962 * 17 16 6 29 29 H 1.09003 * 109.46947 * 183.95457 * 17 16 6 30 30 H 1.08998 * 109.47380 * 303.95309 * 17 16 6 31 31 H 1.09179 * 110.95093 * 60.40241 * 18 16 6 32 32 H 1.09726 * 108.59615 * 178.76103 * 18 16 6 33 33 H 1.09000 * 109.47282 * 177.04732 * 20 19 3 34 34 H 1.09004 * 109.46953 * 297.05110 * 20 19 3 35 35 H 1.09000 * 109.46924 * 57.04184 * 20 19 3 36 36 H 1.08998 * 109.47706 * 296.17934 * 21 19 3 37 37 H 1.09003 * 109.47462 * 56.18647 * 21 19 3 38 38 H 1.09005 * 109.46997 * 176.18275 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0201 1.3861 0.0000 4 6 2.1127 2.0123 -1.1798 5 8 1.9486 1.3834 -2.2006 6 6 2.4006 3.4863 -1.2700 7 1 1.7573 3.9373 -2.0288 8 6 3.8418 3.7017 -1.6507 9 1 4.4986 4.2495 -0.9912 10 6 4.3228 3.1996 -2.8414 11 7 3.5230 2.5331 -3.6448 12 14 6.1105 3.4663 -3.3133 13 1 6.7937 4.2415 -2.2467 14 1 6.7808 2.1513 -3.4766 15 1 6.1780 4.2185 -4.5918 16 7 2.1258 4.1116 0.0277 17 6 2.4374 5.5493 -0.0031 18 6 2.8347 3.4462 1.1237 19 6 2.3873 1.9935 1.2690 20 6 3.5442 1.1774 1.8786 21 6 1.1922 1.9359 2.2296 22 1 -0.3633 0.5906 0.8410 23 1 -0.3633 0.4331 -0.9320 24 1 -0.3634 -1.0236 0.0910 25 1 1.8933 -0.5138 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 3.8615 2.1795 -4.4823 28 1 1.7775 6.0489 -0.7124 29 1 2.2915 5.9740 0.9901 30 1 3.4738 5.6900 -0.3098 31 1 3.9151 3.4879 0.9720 32 1 2.6060 3.9725 2.0589 33 1 3.8705 1.6469 2.8066 34 1 3.2038 0.1626 2.0848 35 1 4.3763 1.1456 1.1753 36 1 0.3746 2.5351 1.8289 37 1 0.8646 0.9022 2.3406 38 1 1.4883 2.3294 3.2020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220395246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:51 Heat of formation + Delta-G solvation = -14.488455 kcal Electronic energy + Delta-G solvation = -19239.715198 eV Core-core repulsion = 16503.865673 eV Total energy + Delta-G solvation = -2735.849525 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.67716 -36.27485 -35.67383 -32.33656 -32.03975 -29.64520 -27.47078 -26.92268 -26.30006 -24.16972 -22.70512 -20.90473 -20.62122 -17.51913 -16.39381 -15.92607 -15.30008 -14.65412 -14.47312 -13.70630 -13.48986 -13.36064 -12.89418 -12.79639 -12.62928 -12.31919 -11.93282 -11.79219 -11.76544 -11.33859 -11.22312 -11.14205 -10.89067 -10.83940 -10.69324 -10.51007 -10.28215 -10.13550 -9.96941 -9.62453 -8.56006 -8.06501 -7.56838 -7.23368 -5.89886 -4.12861 3.26897 3.35192 3.36841 4.01949 4.29522 4.46332 4.89513 5.21673 5.27551 5.41331 5.55534 5.60377 5.86698 5.89855 5.92845 5.94229 6.03817 6.06288 6.13870 6.19172 6.25126 6.36405 6.40678 6.52423 6.53699 6.71351 6.74327 6.77788 6.86884 7.18257 7.56420 7.76228 7.86619 8.10713 8.14753 8.67785 8.97222 9.52120 9.87172 11.02952 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.010946 C = 0.009441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.961891 B = 2557.301359 C = 2965.076048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.109 3.891 3 N -0.613 5.613 4 C 0.529 3.471 5 O -0.504 6.504 6 C 0.207 3.793 7 H 0.067 0.933 8 C -0.566 4.566 9 H 0.064 0.936 10 C 0.072 3.928 11 N -0.823 5.823 12 Si 0.884 3.116 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.282 1.282 16 N -0.542 5.542 17 C 0.036 3.964 18 C 0.065 3.935 19 C 0.184 3.816 20 C -0.160 4.160 21 C -0.151 4.151 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.260 0.740 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 -1.059 11.279 11.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.015 4.015 3 N -0.350 5.350 4 C 0.318 3.682 5 O -0.374 6.374 6 C 0.097 3.903 7 H 0.084 0.916 8 C -0.605 4.605 9 H 0.082 0.918 10 C -0.138 4.138 11 N -0.456 5.456 12 Si 0.712 3.288 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.208 1.208 16 N -0.267 5.267 17 C -0.112 4.112 18 C -0.064 4.064 19 C 0.097 3.903 20 C -0.219 4.219 21 C -0.209 4.209 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.300 -1.533 10.553 11.163 hybrid contribution 2.017 0.089 -0.380 2.055 sum -1.283 -1.443 10.173 10.355 Atomic orbital electron populations 1.22202 0.97008 1.00643 1.02457 1.21241 0.93595 0.85085 1.01559 1.47745 1.67917 1.13063 1.06279 1.21150 0.74359 0.91203 0.81512 1.90574 1.47142 1.66757 1.32975 1.19406 0.97252 0.87142 0.86462 0.91594 1.21169 0.95148 1.38841 1.05344 0.91793 1.25088 0.97423 0.94657 0.96596 1.70271 1.34022 1.31441 1.09863 0.86669 0.85682 0.77899 0.78584 1.19848 1.21048 1.20805 1.62160 1.56421 1.02831 1.05289 1.22187 1.00605 0.88801 0.99647 1.22057 0.97203 0.92200 0.94909 1.20153 0.93223 0.92658 0.84230 1.22522 0.98981 0.99774 1.00600 1.22377 0.98858 1.01517 0.98193 0.92544 0.92389 0.93058 0.90828 0.92126 0.92945 0.92276 0.93656 0.94193 0.93898 0.91798 0.92356 0.92758 0.92053 0.91710 0.92835 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.90 37.16 0.37 -2.28 16 2 C 0.11 1.97 5.08 -3.76 -0.02 1.95 16 3 N -0.61 -12.70 2.36 -158.85 -0.37 -13.08 16 4 C 0.53 13.57 6.54 -11.50 -0.08 13.50 16 5 O -0.50 -14.74 13.72 5.79 0.08 -14.66 16 6 C 0.21 5.29 2.31 -70.31 -0.16 5.13 16 7 H 0.07 1.88 8.16 -51.80 -0.42 1.46 16 8 C -0.57 -15.32 7.13 -34.48 -0.25 -15.57 16 9 H 0.06 1.70 6.03 -52.49 -0.32 1.39 16 10 C 0.07 2.02 5.31 -17.82 -0.09 1.92 16 11 N -0.82 -24.74 10.61 55.43 0.59 -24.16 16 12 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 N -0.54 -11.35 4.85 -237.89 -1.15 -12.51 16 17 C 0.04 0.67 9.40 60.19 0.57 1.23 16 18 C 0.07 1.20 4.29 -4.19 -0.02 1.19 16 19 C 0.18 3.18 1.04 -131.74 -0.14 3.05 16 20 C -0.16 -2.43 8.13 37.75 0.31 -2.12 16 21 C -0.15 -2.14 7.16 37.39 0.27 -1.87 16 22 H 0.06 0.84 5.96 -51.93 -0.31 0.54 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.51 7.29 -51.93 -0.38 1.13 16 26 H 0.06 0.92 6.11 -51.93 -0.32 0.61 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.70 7.97 -51.93 -0.41 0.28 16 30 H 0.04 0.80 6.24 -51.93 -0.32 0.47 16 31 H 0.04 0.86 6.87 -51.83 -0.36 0.50 16 32 H 0.06 0.99 7.58 -51.52 -0.39 0.60 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.74 6.62 -51.93 -0.34 0.40 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.05 0.70 6.21 -51.93 -0.32 0.38 16 38 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 LS Contribution 288.90 15.07 4.35 4.35 Total: -1.00 -31.47 288.90 -6.76 -38.22 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.98 Total: -0.74 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 0.76 Total: 6.12 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.94 Total: -49.74 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.08 Total: -14.66 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.47 -6.76 -38.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220395246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.735 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds