Wall clock time and date at job start Mon Mar 30 2020 03:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.47026 * 109.47491 * 2 1 4 4 C 1.33889 * 117.64307 * 275.87967 * 3 2 1 5 5 O 1.21012 * 119.39731 * 351.31032 * 4 3 2 6 6 C 1.50451 * 121.61626 * 170.58593 * 4 3 2 7 7 H 1.09223 * 109.48470 * 222.72858 * 6 4 3 8 8 C 1.50617 * 109.78164 * 102.86174 * 6 4 3 9 9 H 1.07997 * 120.00483 * 240.00388 * 8 6 4 10 10 C 1.37880 * 119.99785 * 60.00253 * 8 6 4 11 11 N 1.31510 * 120.00036 * 0.02562 * 10 8 6 12 12 Si 1.86807 * 120.00005 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46865 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47163 * 119.99733 * 12 10 8 15 15 H 1.48495 * 109.46951 * 240.00294 * 12 10 8 16 16 N 1.46651 * 109.19831 * 342.19497 * 6 4 3 17 17 C 1.47137 * 111.00332 * 178.11976 * 16 6 4 18 18 C 1.46506 * 112.18740 * 53.39915 * 16 6 4 19 19 C 1.45401 * 118.55401 * 96.46083 * 3 2 1 20 20 C 1.54136 * 108.27400 * 61.43716 * 19 3 2 21 21 C 1.53442 * 109.51142 * 303.31415 * 19 3 2 22 22 H 1.09000 * 109.47168 * 305.07985 * 1 2 3 23 23 H 1.09001 * 109.47062 * 65.07733 * 1 2 3 24 24 H 1.09004 * 109.47561 * 185.07813 * 1 2 3 25 25 H 1.08998 * 109.47170 * 239.99899 * 2 1 3 26 26 H 1.08997 * 109.46743 * 120.00313 * 2 1 3 27 27 H 0.97004 * 119.99992 * 180.02562 * 11 10 8 28 28 H 1.09003 * 109.47081 * 63.95962 * 17 16 6 29 29 H 1.09003 * 109.46947 * 183.95457 * 17 16 6 30 30 H 1.08998 * 109.47380 * 303.95309 * 17 16 6 31 31 H 1.09179 * 110.95093 * 60.40241 * 18 16 6 32 32 H 1.09726 * 108.59615 * 178.76103 * 18 16 6 33 33 H 1.09000 * 109.47282 * 177.04732 * 20 19 3 34 34 H 1.09004 * 109.46953 * 297.05110 * 20 19 3 35 35 H 1.09000 * 109.46924 * 57.04184 * 20 19 3 36 36 H 1.08998 * 109.47706 * 296.17934 * 21 19 3 37 37 H 1.09003 * 109.47462 * 56.18647 * 21 19 3 38 38 H 1.09005 * 109.46997 * 176.18275 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0201 1.3861 0.0000 4 6 2.1127 2.0123 -1.1798 5 8 1.9486 1.3834 -2.2006 6 6 2.4006 3.4863 -1.2700 7 1 1.7573 3.9373 -2.0288 8 6 3.8418 3.7017 -1.6507 9 1 4.4986 4.2495 -0.9912 10 6 4.3228 3.1996 -2.8414 11 7 3.5230 2.5331 -3.6448 12 14 6.1105 3.4663 -3.3133 13 1 6.7937 4.2415 -2.2467 14 1 6.7808 2.1513 -3.4766 15 1 6.1780 4.2185 -4.5918 16 7 2.1258 4.1116 0.0277 17 6 2.4374 5.5493 -0.0031 18 6 2.8347 3.4462 1.1237 19 6 2.3873 1.9935 1.2690 20 6 3.5442 1.1774 1.8786 21 6 1.1922 1.9359 2.2296 22 1 -0.3633 0.5906 0.8410 23 1 -0.3633 0.4331 -0.9320 24 1 -0.3634 -1.0236 0.0910 25 1 1.8933 -0.5138 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 3.8615 2.1795 -4.4823 28 1 1.7775 6.0489 -0.7124 29 1 2.2915 5.9740 0.9901 30 1 3.4738 5.6900 -0.3098 31 1 3.9151 3.4879 0.9720 32 1 2.6060 3.9725 2.0589 33 1 3.8705 1.6469 2.8066 34 1 3.2038 0.1626 2.0848 35 1 4.3763 1.1456 1.1753 36 1 0.3746 2.5351 1.8289 37 1 0.8646 0.9022 2.3406 38 1 1.4883 2.3294 3.2020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220395246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:51 Heat of formation + Delta-G solvation = -37.158135 kcal Electronic energy + Delta-G solvation = -19240.698229 eV Core-core repulsion = 16503.865673 eV Total energy + Delta-G solvation = -2736.832556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36117 -38.07858 -37.33714 -34.41782 -33.52753 -31.25575 -29.33527 -28.14695 -27.70331 -26.11810 -24.22167 -22.48713 -22.26945 -19.45347 -18.00774 -17.70972 -17.03172 -16.63695 -16.06417 -15.41420 -15.13714 -14.78812 -14.50206 -14.46839 -14.14007 -13.68587 -13.48190 -13.39816 -13.05390 -12.93551 -12.91196 -12.75998 -12.55556 -12.44538 -12.33343 -11.96083 -11.92173 -11.68650 -11.61259 -11.45043 -10.71041 -10.03374 -9.23619 -8.99590 -8.01976 -6.32948 1.32857 1.33685 1.45006 2.28861 2.44445 2.47129 3.14244 3.32544 3.86628 4.05726 4.17840 4.24285 4.48598 4.53252 4.57984 4.62830 4.72154 4.81298 4.85180 4.88750 4.95180 5.01424 5.08978 5.10260 5.15986 5.19957 5.24820 5.28202 5.45072 5.56636 5.65878 5.90780 6.00209 6.16260 6.47585 6.67100 7.10679 7.35759 7.95854 8.88355 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.010946 C = 0.009441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.961891 B = 2557.301359 C = 2965.076048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.106 3.894 3 N -0.609 5.609 4 C 0.520 3.480 5 O -0.555 6.555 6 C 0.208 3.792 7 H 0.019 0.981 8 C -0.564 4.564 9 H 0.067 0.933 10 C 0.016 3.984 11 N -0.864 5.864 12 Si 0.951 3.049 13 H -0.260 1.260 14 H -0.288 1.288 15 H -0.278 1.278 16 N -0.543 5.543 17 C 0.037 3.963 18 C 0.060 3.940 19 C 0.167 3.833 20 C -0.153 4.153 21 C -0.141 4.141 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.100 0.900 27 H 0.255 0.745 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.281 -1.104 14.822 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.017 4.017 3 N -0.345 5.345 4 C 0.309 3.691 5 O -0.430 6.430 6 C 0.098 3.902 7 H 0.037 0.963 8 C -0.603 4.603 9 H 0.085 0.915 10 C -0.190 4.190 11 N -0.498 5.498 12 Si 0.776 3.224 13 H -0.184 1.184 14 H -0.214 1.214 15 H -0.203 1.203 16 N -0.268 5.268 17 C -0.111 4.111 18 C -0.069 4.069 19 C 0.081 3.919 20 C -0.211 4.211 21 C -0.199 4.199 22 H 0.092 0.908 23 H 0.039 0.961 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.897 -1.561 14.176 14.553 hybrid contribution 1.850 0.137 -1.379 2.311 sum -1.047 -1.424 12.797 12.919 Atomic orbital electron populations 1.22113 0.95262 1.02694 1.01173 1.21421 0.94995 0.83515 1.01747 1.47711 1.66565 1.13983 1.06195 1.21063 0.74273 0.91277 0.82486 1.90535 1.49618 1.67674 1.35188 1.19077 0.95478 0.87807 0.87875 0.96298 1.21434 0.95935 1.37868 1.05097 0.91501 1.25935 1.01653 0.94561 0.96808 1.70486 1.36000 1.33115 1.10194 0.85619 0.80550 0.77614 0.78588 1.18377 1.21388 1.20334 1.62092 1.56968 1.03921 1.03785 1.22246 0.99290 0.87616 1.01916 1.22276 0.95863 0.93462 0.95290 1.20629 0.95812 0.92173 0.83238 1.22465 0.96848 1.00852 1.00953 1.22289 0.96572 1.02607 0.98444 0.90816 0.96053 0.89859 0.94232 0.88207 0.93570 0.92865 0.89506 0.95938 0.95819 0.87691 0.89007 0.90862 0.95221 0.93124 0.91296 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 9.90 71.98 0.71 -4.03 16 2 C 0.11 3.72 5.08 86.28 0.44 4.16 16 3 N -0.61 -24.98 2.36 -775.48 -1.83 -26.81 16 4 C 0.52 27.72 6.54 87.72 0.57 28.29 16 5 O -0.56 -34.44 13.72 -2.21 -0.03 -34.47 16 6 C 0.21 11.06 2.31 43.37 0.10 11.16 16 7 H 0.02 1.18 8.16 -2.27 -0.02 1.16 16 8 C -0.56 -31.39 7.13 25.57 0.18 -31.20 16 9 H 0.07 3.59 6.03 -2.91 -0.02 3.58 16 10 C 0.02 0.91 5.31 84.66 0.45 1.36 16 11 N -0.86 -54.58 10.61 21.45 0.23 -54.36 16 12 Si 0.95 45.19 29.54 68.60 2.03 47.21 16 13 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 16 N -0.54 -22.48 4.85 -906.54 -4.40 -26.87 16 17 C 0.04 1.35 9.40 127.65 1.20 2.55 16 18 C 0.06 2.05 4.29 86.28 0.37 2.42 16 19 C 0.17 5.29 1.04 4.24 0.00 5.30 16 20 C -0.15 -4.08 8.13 72.37 0.59 -3.49 16 21 C -0.14 -3.32 7.16 72.13 0.52 -2.81 16 22 H 0.07 2.00 5.96 -2.39 -0.01 1.98 16 23 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.04 1.66 7.29 -2.39 -0.02 1.65 16 26 H 0.10 2.70 6.11 -2.39 -0.01 2.69 16 27 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.09 2.40 7.97 -2.39 -0.02 2.38 16 30 H 0.02 0.88 6.24 -2.39 -0.01 0.86 16 31 H 0.02 0.91 6.87 -2.29 -0.02 0.89 16 32 H 0.11 2.75 7.58 -2.00 -0.02 2.74 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 34 H 0.07 1.67 6.62 -2.38 -0.02 1.65 16 35 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 1.36 8.09 -2.39 -0.02 1.34 16 37 H 0.07 1.43 6.21 -2.39 -0.01 1.41 16 38 H 0.09 1.54 8.07 -2.38 -0.02 1.53 16 Total: -1.00 -73.80 288.90 2.17 -71.63 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.04 Total: 9.96 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.14 Total: 13.70 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -6.00 Total: -108.03 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.03 Total: -34.47 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -73.80 2.17 -71.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220395246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.467 kcal (2) G-P(sol) polarization free energy of solvation -73.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds