Wall clock time and date at job start Mon Mar 30 2020 03:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46788 * 2 1 4 4 C 1.33718 * 118.53779 * 89.99939 * 3 2 1 5 5 O 1.21283 * 118.62165 * 1.70695 * 4 3 2 6 6 C 1.50251 * 122.75107 * 181.98771 * 4 3 2 7 7 H 1.09001 * 109.38948 * 102.67305 * 6 4 3 8 8 C 1.50696 * 109.39030 * 222.36278 * 6 4 3 9 9 H 1.07996 * 120.00307 * 119.99549 * 8 6 4 10 10 C 1.37876 * 119.99821 * 300.00426 * 8 6 4 11 11 N 1.31516 * 120.00221 * 359.97438 * 10 8 6 12 12 Si 1.86809 * 119.99983 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46706 * 90.00090 * 12 10 8 14 14 H 1.48496 * 109.46990 * 210.00117 * 12 10 8 15 15 H 1.48501 * 109.46944 * 330.00025 * 12 10 8 16 16 N 1.47079 * 109.88476 * 342.32311 * 6 4 3 17 17 C 1.46898 * 110.94836 * 173.89847 * 16 6 4 18 18 C 1.47184 * 110.01207 * 50.68078 * 16 6 4 19 19 C 1.46014 * 118.53502 * 270.02187 * 3 2 1 20 20 C 1.53005 * 109.37190 * 281.99189 * 19 3 2 21 21 C 1.53001 * 109.37667 * 41.75699 * 19 3 2 22 22 H 1.09006 * 109.47510 * 299.99790 * 1 2 3 23 23 H 1.09000 * 109.47203 * 60.00470 * 1 2 3 24 24 H 1.09010 * 109.46904 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47356 * 240.00109 * 2 1 3 26 26 H 1.09000 * 109.47203 * 119.99530 * 2 1 3 27 27 H 0.96995 * 119.99897 * 180.02562 * 11 10 8 28 28 H 1.08994 * 109.47786 * 297.34632 * 17 16 6 29 29 H 1.09000 * 109.47380 * 57.35535 * 17 16 6 30 30 H 1.09007 * 109.46894 * 177.34602 * 17 16 6 31 31 H 1.09000 * 109.59496 * 171.05720 * 18 16 6 32 32 H 1.09004 * 109.59782 * 50.59997 * 18 16 6 33 33 H 1.08996 * 109.46965 * 60.00328 * 20 19 3 34 34 H 1.09004 * 109.46900 * 180.02562 * 20 19 3 35 35 H 1.09002 * 109.47028 * 299.99534 * 20 19 3 36 36 H 1.08998 * 109.46885 * 60.00122 * 21 19 3 37 37 H 1.08991 * 109.47042 * 180.02562 * 21 19 3 38 38 H 1.09000 * 109.47095 * 300.00234 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2311 1.9836 1.1747 5 8 2.0420 1.3533 2.1935 6 6 2.6890 3.4104 1.2855 7 1 1.8423 4.0423 1.5537 8 6 3.7466 3.5149 2.3538 9 1 4.7349 3.8705 2.1024 10 6 3.4527 3.1563 3.6523 11 7 2.2492 2.7235 3.9586 12 14 4.7640 3.2852 4.9765 13 1 4.7083 4.6324 5.5987 14 1 4.5231 2.2504 6.0140 15 1 6.1029 3.0753 4.3694 16 7 3.2503 3.8567 0.0014 17 6 3.5724 5.2895 0.0387 18 6 2.3108 3.5556 -1.0909 19 6 2.2502 2.0391 -1.2828 20 6 3.5742 1.5488 -1.8724 21 6 1.1092 1.6963 -2.2427 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0423 2.4716 4.8721 28 1 2.6591 5.8634 0.1951 29 1 4.2683 5.4843 0.8547 30 1 4.0292 5.5839 -0.9063 31 1 2.6566 4.0268 -2.0109 32 1 1.3201 3.9315 -0.8351 33 1 3.5290 0.4697 -2.0194 34 1 3.7492 2.0392 -2.8300 35 1 4.3878 1.7885 -1.1878 36 1 0.1646 2.0413 -1.8221 37 1 1.2811 2.1863 -3.2010 38 1 1.0692 0.6169 -2.3889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220395857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:54 Heat of formation + Delta-G solvation = -2.289453 kcal Electronic energy + Delta-G solvation = -19154.051003 eV Core-core repulsion = 16418.730466 eV Total energy + Delta-G solvation = -2735.320536 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.75976 -36.25785 -35.67988 -32.18893 -32.01237 -29.73396 -27.63364 -26.85960 -26.49008 -23.76368 -22.74532 -20.90714 -20.65242 -17.16626 -16.83568 -15.84026 -15.37432 -14.46690 -14.03979 -13.98569 -13.71764 -13.41087 -13.15648 -12.90373 -12.35605 -12.24167 -12.03670 -11.95876 -11.67960 -11.45328 -11.32275 -11.06595 -10.92746 -10.78190 -10.64393 -10.49098 -10.26434 -10.18883 -9.79359 -9.26564 -8.36340 -7.90576 -7.60485 -7.38300 -5.80805 -3.89071 3.38170 3.45393 3.48724 3.98524 4.28494 4.56431 4.82410 5.14908 5.35457 5.45918 5.53351 5.55764 5.77771 5.83493 5.88362 5.94242 5.95590 6.02268 6.07510 6.11980 6.21334 6.27983 6.33508 6.36747 6.47179 6.66259 6.73026 6.83466 6.89002 7.13917 7.43767 7.75210 7.91610 8.07890 8.41175 8.77438 9.06804 9.70033 9.93596 11.19776 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026354 B = 0.010399 C = 0.008350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.182290 B = 2691.801436 C = 3352.403575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.620 5.620 4 C 0.509 3.491 5 O -0.482 6.482 6 C 0.214 3.786 7 H 0.025 0.975 8 C -0.532 4.532 9 H 0.067 0.933 10 C 0.074 3.926 11 N -0.822 5.822 12 Si 0.894 3.106 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.274 1.274 16 N -0.529 5.529 17 C 0.038 3.962 18 C 0.047 3.953 19 C 0.177 3.823 20 C -0.147 4.147 21 C -0.155 4.155 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.255 0.745 28 H 0.013 0.987 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.782 -0.817 -12.101 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 N -0.359 5.359 4 C 0.298 3.702 5 O -0.351 6.351 6 C 0.105 3.895 7 H 0.042 0.958 8 C -0.570 4.570 9 H 0.085 0.915 10 C -0.135 4.135 11 N -0.455 5.455 12 Si 0.722 3.278 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.199 1.199 16 N -0.255 5.255 17 C -0.111 4.111 18 C -0.082 4.082 19 C 0.091 3.909 20 C -0.205 4.205 21 C -0.214 4.214 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.576 -1.484 -11.375 11.579 hybrid contribution -0.179 0.384 0.751 0.862 sum -1.755 -1.101 -10.624 10.824 Atomic orbital electron populations 1.22305 0.97253 1.00877 1.02300 1.21089 0.93400 0.85266 1.01525 1.48264 1.68692 1.13185 1.05719 1.21802 0.76024 0.90797 0.81622 1.90730 1.47955 1.63487 1.32898 1.19394 0.95579 0.88269 0.86257 0.95774 1.20555 0.97411 1.48286 0.90789 0.91514 1.24959 0.95409 0.94584 0.98583 1.70227 1.19229 1.38048 1.18029 0.86581 0.82236 0.77375 0.81619 1.20850 1.21373 1.19913 1.62655 1.41691 1.16454 1.04673 1.22220 0.99757 0.87790 1.01322 1.22414 0.95253 0.94206 0.96348 1.20127 0.94211 0.92237 0.84344 1.22104 0.98264 0.99781 1.00394 1.22306 0.98524 1.01786 0.98753 0.92331 0.92632 0.93040 0.92423 0.90575 0.93430 0.96855 0.90233 0.93297 0.90669 0.95156 0.93593 0.92874 0.90803 0.92250 0.92147 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.90 37.16 0.37 -2.35 16 2 C 0.11 2.00 5.24 -4.04 -0.02 1.98 16 3 N -0.62 -12.72 2.36 -159.66 -0.38 -13.09 16 4 C 0.51 13.16 7.11 -11.67 -0.08 13.07 16 5 O -0.48 -14.30 12.27 5.55 0.07 -14.23 16 6 C 0.21 5.53 1.93 -70.14 -0.14 5.39 16 7 H 0.03 0.70 8.12 -51.93 -0.42 0.28 16 8 C -0.53 -15.01 7.87 -34.44 -0.27 -15.28 16 9 H 0.07 1.86 7.12 -52.49 -0.37 1.49 16 10 C 0.07 2.13 4.97 -17.82 -0.09 2.04 16 11 N -0.82 -25.06 10.29 55.43 0.57 -24.49 16 12 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 16 N -0.53 -11.13 4.36 -237.58 -1.04 -12.16 16 17 C 0.04 0.69 9.36 60.06 0.56 1.26 16 18 C 0.05 0.82 4.24 -3.68 -0.02 0.80 16 19 C 0.18 2.95 0.86 -132.09 -0.11 2.84 16 20 C -0.15 -2.26 8.55 37.16 0.32 -1.94 16 21 C -0.16 -2.03 6.96 37.16 0.26 -1.77 16 22 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.05 0.80 5.20 -51.93 -0.27 0.53 16 24 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.06 0.87 6.56 -51.94 -0.34 0.53 16 26 H 0.08 1.57 7.21 -51.93 -0.37 1.20 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 1.58 6.78 -51.93 -0.35 1.23 16 30 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 31 H 0.07 1.09 8.01 -51.93 -0.42 0.68 16 32 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16 33 H 0.04 0.66 7.49 -51.93 -0.39 0.27 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.35 7.89 -51.93 -0.41 0.94 16 36 H 0.06 0.81 7.01 -51.93 -0.36 0.44 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.75 6.35 -51.93 -0.33 0.42 16 LS Contribution 290.04 15.07 4.37 4.37 Total: -1.00 -32.24 290.04 -6.78 -39.02 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.13 Total: -2.67 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 0.78 Total: 6.04 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.84 Total: -49.75 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.07 Total: -14.23 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.24 -6.78 -39.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220395857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.726 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds