Wall clock time and date at job start Mon Mar 30 2020 03:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46788 * 2 1 4 4 C 1.33718 * 118.53779 * 89.99939 * 3 2 1 5 5 O 1.21283 * 118.62165 * 1.70695 * 4 3 2 6 6 C 1.50251 * 122.75107 * 181.98771 * 4 3 2 7 7 H 1.09001 * 109.38948 * 102.67305 * 6 4 3 8 8 C 1.50696 * 109.39030 * 222.36278 * 6 4 3 9 9 H 1.07996 * 120.00307 * 119.99549 * 8 6 4 10 10 C 1.37876 * 119.99821 * 300.00426 * 8 6 4 11 11 N 1.31516 * 120.00221 * 359.97438 * 10 8 6 12 12 Si 1.86809 * 119.99983 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46706 * 90.00090 * 12 10 8 14 14 H 1.48496 * 109.46990 * 210.00117 * 12 10 8 15 15 H 1.48501 * 109.46944 * 330.00025 * 12 10 8 16 16 N 1.47079 * 109.88476 * 342.32311 * 6 4 3 17 17 C 1.46898 * 110.94836 * 173.89847 * 16 6 4 18 18 C 1.47184 * 110.01207 * 50.68078 * 16 6 4 19 19 C 1.46014 * 118.53502 * 270.02187 * 3 2 1 20 20 C 1.53005 * 109.37190 * 281.99189 * 19 3 2 21 21 C 1.53001 * 109.37667 * 41.75699 * 19 3 2 22 22 H 1.09006 * 109.47510 * 299.99790 * 1 2 3 23 23 H 1.09000 * 109.47203 * 60.00470 * 1 2 3 24 24 H 1.09010 * 109.46904 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47356 * 240.00109 * 2 1 3 26 26 H 1.09000 * 109.47203 * 119.99530 * 2 1 3 27 27 H 0.96995 * 119.99897 * 180.02562 * 11 10 8 28 28 H 1.08994 * 109.47786 * 297.34632 * 17 16 6 29 29 H 1.09000 * 109.47380 * 57.35535 * 17 16 6 30 30 H 1.09007 * 109.46894 * 177.34602 * 17 16 6 31 31 H 1.09000 * 109.59496 * 171.05720 * 18 16 6 32 32 H 1.09004 * 109.59782 * 50.59997 * 18 16 6 33 33 H 1.08996 * 109.46965 * 60.00328 * 20 19 3 34 34 H 1.09004 * 109.46900 * 180.02562 * 20 19 3 35 35 H 1.09002 * 109.47028 * 299.99534 * 20 19 3 36 36 H 1.08998 * 109.46885 * 60.00122 * 21 19 3 37 37 H 1.08991 * 109.47042 * 180.02562 * 21 19 3 38 38 H 1.09000 * 109.47095 * 300.00234 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2311 1.9836 1.1747 5 8 2.0420 1.3533 2.1935 6 6 2.6890 3.4104 1.2855 7 1 1.8423 4.0423 1.5537 8 6 3.7466 3.5149 2.3538 9 1 4.7349 3.8705 2.1024 10 6 3.4527 3.1563 3.6523 11 7 2.2492 2.7235 3.9586 12 14 4.7640 3.2852 4.9765 13 1 4.7083 4.6324 5.5987 14 1 4.5231 2.2504 6.0140 15 1 6.1029 3.0753 4.3694 16 7 3.2503 3.8567 0.0014 17 6 3.5724 5.2895 0.0387 18 6 2.3108 3.5556 -1.0909 19 6 2.2502 2.0391 -1.2828 20 6 3.5742 1.5488 -1.8724 21 6 1.1092 1.6963 -2.2427 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0423 2.4716 4.8721 28 1 2.6591 5.8634 0.1951 29 1 4.2683 5.4843 0.8547 30 1 4.0292 5.5839 -0.9063 31 1 2.6566 4.0268 -2.0109 32 1 1.3201 3.9315 -0.8351 33 1 3.5290 0.4697 -2.0194 34 1 3.7492 2.0392 -2.8300 35 1 4.3878 1.7885 -1.1878 36 1 0.1646 2.0413 -1.8221 37 1 1.2811 2.1863 -3.2010 38 1 1.0692 0.6169 -2.3889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220395857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:53 Heat of formation + Delta-G solvation = -25.390246 kcal Electronic energy + Delta-G solvation = -19155.052728 eV Core-core repulsion = 16418.730466 eV Total energy + Delta-G solvation = -2736.322262 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.41644 -38.04979 -37.33061 -34.31323 -33.47544 -31.32612 -29.51752 -28.13631 -27.82925 -25.69283 -24.25647 -22.50601 -22.27690 -19.01333 -18.54431 -17.66575 -17.01088 -16.44649 -15.69255 -15.45841 -15.44575 -15.06723 -14.59749 -14.48089 -13.95935 -13.73182 -13.56461 -13.38655 -13.11821 -12.85567 -12.77760 -12.71957 -12.52490 -12.47725 -12.28490 -12.15063 -11.86532 -11.67740 -11.47996 -11.23436 -10.52269 -9.90754 -9.28382 -9.08571 -7.99539 -6.13801 1.37672 1.41323 1.50782 2.29113 2.42744 2.52000 3.23517 3.32136 3.85593 4.01465 4.17039 4.21634 4.43606 4.49228 4.54676 4.60793 4.70267 4.72264 4.79434 4.83753 4.89620 4.99766 5.05231 5.09372 5.14539 5.16730 5.25333 5.27151 5.42713 5.60572 5.65842 5.90245 6.06382 6.23790 6.56462 6.75941 7.08588 7.49101 8.01455 9.00344 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026354 B = 0.010399 C = 0.008350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.182290 B = 2691.801436 C = 3352.403575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.108 3.892 3 N -0.615 5.615 4 C 0.501 3.499 5 O -0.535 6.535 6 C 0.217 3.783 7 H -0.017 1.017 8 C -0.544 4.544 9 H 0.064 0.936 10 C 0.020 3.980 11 N -0.857 5.857 12 Si 0.958 3.042 13 H -0.268 1.268 14 H -0.292 1.292 15 H -0.268 1.268 16 N -0.535 5.535 17 C 0.038 3.962 18 C 0.043 3.957 19 C 0.164 3.836 20 C -0.140 4.140 21 C -0.148 4.148 22 H 0.016 0.984 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.041 0.959 27 H 0.250 0.750 28 H 0.012 0.988 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 -1.006 -15.302 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.014 4.014 3 N -0.352 5.352 4 C 0.289 3.711 5 O -0.408 6.408 6 C 0.106 3.894 7 H 0.000 1.000 8 C -0.582 4.582 9 H 0.082 0.918 10 C -0.186 4.186 11 N -0.491 5.491 12 Si 0.784 3.216 13 H -0.193 1.193 14 H -0.218 1.218 15 H -0.192 1.192 16 N -0.260 5.260 17 C -0.110 4.110 18 C -0.086 4.086 19 C 0.079 3.921 20 C -0.198 4.198 21 C -0.205 4.205 22 H 0.035 0.965 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.030 0.970 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.030 -1.656 -14.657 14.786 hybrid contribution -0.351 0.465 1.605 1.708 sum -1.381 -1.191 -13.051 13.178 Atomic orbital electron populations 1.22216 0.95592 1.02489 1.01357 1.21264 0.94728 0.83724 1.01720 1.48142 1.67123 1.14131 1.05851 1.21613 0.75982 0.90839 0.82686 1.90690 1.50303 1.64607 1.35232 1.19092 0.93629 0.88293 0.88357 0.99981 1.20863 0.97729 1.47724 0.91871 0.91828 1.25811 0.97408 0.94355 1.01013 1.70428 1.21277 1.39486 1.17890 0.85574 0.79671 0.77725 0.78678 1.19297 1.21799 1.19208 1.62604 1.42224 1.17867 1.03342 1.22260 0.99455 0.86525 1.02727 1.22647 0.94129 0.95329 0.96446 1.20610 0.96898 0.91479 0.83122 1.22032 0.95762 1.00992 1.00986 1.22251 0.96166 1.03201 0.98929 0.96457 0.90246 0.90201 0.88364 0.94076 0.94100 0.96959 0.92389 0.89133 0.86489 0.96195 0.92331 0.89279 0.94321 0.93045 0.88645 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 9.90 71.98 0.71 -4.19 16 2 C 0.11 3.80 5.24 86.38 0.45 4.26 16 3 N -0.62 -25.02 2.36 -778.03 -1.84 -26.85 16 4 C 0.50 26.86 7.11 87.68 0.62 27.49 16 5 O -0.54 -33.54 12.27 -3.04 -0.04 -33.58 16 6 C 0.22 11.63 1.93 43.25 0.08 11.72 16 7 H -0.02 -1.02 8.12 -2.39 -0.02 -1.04 16 8 C -0.54 -31.84 7.87 25.60 0.20 -31.64 16 9 H 0.06 3.65 7.12 -2.91 -0.02 3.63 16 10 C 0.02 1.17 4.97 84.65 0.42 1.59 16 11 N -0.86 -54.99 10.29 21.45 0.22 -54.77 16 12 Si 0.96 47.13 29.54 68.60 2.03 49.15 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 15 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 16 N -0.54 -22.29 4.36 -905.57 -3.95 -26.24 16 17 C 0.04 1.38 9.36 127.69 1.19 2.58 16 18 C 0.04 1.39 4.24 86.24 0.37 1.76 16 19 C 0.16 4.98 0.86 3.69 0.00 4.98 16 20 C -0.14 -3.76 8.55 71.98 0.62 -3.14 16 21 C -0.15 -3.15 6.96 71.98 0.50 -2.65 16 22 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 23 H 0.08 2.06 5.20 -2.39 -0.01 2.04 16 24 H 0.08 2.00 8.14 -2.38 -0.02 1.99 16 25 H 0.10 2.64 6.56 -2.39 -0.02 2.63 16 26 H 0.04 1.73 7.21 -2.39 -0.02 1.72 16 27 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 2.32 6.78 -2.39 -0.02 2.30 16 30 H 0.09 2.50 8.11 -2.38 -0.02 2.48 16 31 H 0.12 2.83 8.01 -2.39 -0.02 2.81 16 32 H 0.02 0.69 8.05 -2.38 -0.02 0.67 16 33 H 0.06 1.42 7.49 -2.39 -0.02 1.40 16 34 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.04 1.32 7.89 -2.39 -0.02 1.30 16 36 H 0.05 1.20 7.01 -2.39 -0.02 1.19 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.44 6.35 -2.39 -0.02 1.42 16 Total: -1.00 -76.13 290.04 2.62 -73.51 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.03 Total: 6.02 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.17 Total: 12.76 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -5.57 Total: -107.86 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.04 Total: -33.58 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -76.13 2.62 -73.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220395857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.120 kcal (2) G-P(sol) polarization free energy of solvation -76.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds