Wall clock time and date at job start Mon Mar 30 2020 03:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47254 * 2 1 4 4 C 1.46902 * 111.00041 * 287.64826 * 3 2 1 5 5 H 1.09003 * 109.38833 * 306.48904 * 4 3 2 6 6 C 1.50697 * 109.38556 * 66.28197 * 4 3 2 7 7 H 1.08003 * 120.00052 * 35.03604 * 6 4 3 8 8 C 1.37877 * 119.99997 * 215.04003 * 6 4 3 9 9 N 1.31515 * 119.99990 * 359.97438 * 8 6 4 10 10 Si 1.86808 * 120.00142 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46826 * 59.99947 * 10 8 6 12 12 H 1.48498 * 109.47060 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46857 * 299.99853 * 10 8 6 14 14 C 1.50249 * 109.97877 * 186.33165 * 4 3 2 15 15 O 1.21285 * 118.62965 * 197.20234 * 14 4 3 16 16 N 1.33716 * 122.75227 * 17.20340 * 14 4 3 17 17 C 1.46502 * 118.53762 * 178.33359 * 16 14 4 18 18 C 1.46012 * 122.92716 * 358.31221 * 16 14 4 19 19 C 1.47190 * 111.00258 * 164.75621 * 3 2 1 20 20 C 1.52996 * 109.59379 * 72.58977 * 19 3 2 21 21 C 1.53002 * 109.59097 * 312.14216 * 19 3 2 22 22 H 1.08999 * 109.46643 * 195.66165 * 1 2 3 23 23 H 1.08995 * 109.46873 * 315.66126 * 1 2 3 24 24 H 1.08998 * 109.47142 * 75.66017 * 1 2 3 25 25 H 1.08998 * 109.47121 * 240.00236 * 2 1 3 26 26 H 1.09000 * 109.47575 * 120.00126 * 2 1 3 27 27 H 0.97004 * 119.99875 * 180.02562 * 9 8 6 28 28 H 1.08999 * 109.47447 * 269.97466 * 17 16 14 29 29 H 1.08996 * 109.47123 * 29.97971 * 17 16 14 30 30 H 1.09004 * 109.47228 * 149.98094 * 17 16 14 31 31 H 1.09000 * 109.37334 * 257.98629 * 18 16 14 32 32 H 1.09002 * 109.37635 * 138.33785 * 18 16 14 33 33 H 1.08997 * 109.47283 * 179.24126 * 20 19 3 34 34 H 1.09001 * 109.47569 * 299.24611 * 20 19 3 35 35 H 1.09002 * 109.47078 * 59.24740 * 20 19 3 36 36 H 1.08999 * 109.47172 * 307.72348 * 21 19 3 37 37 H 1.08996 * 109.47505 * 67.73027 * 21 19 3 38 38 H 1.09007 * 109.46622 * 187.73299 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8032 2.0199 -1.3069 5 1 2.2396 1.3977 -2.0883 6 6 0.3237 2.1670 -1.5526 7 1 -0.3421 2.3786 -0.7289 8 6 -0.1800 2.0313 -2.8289 9 7 0.6307 1.7741 -3.8319 10 14 -2.0142 2.2129 -3.1334 11 1 -2.4532 3.5690 -2.7166 12 1 -2.2970 2.0240 -4.5789 13 1 -2.7501 1.1908 -2.3468 14 6 2.4480 3.3768 -1.3315 15 8 2.1125 4.1642 -2.1909 16 7 3.3763 3.7528 -0.4456 17 6 3.9710 5.0852 -0.5778 18 6 3.8235 2.8948 0.6479 19 6 3.4455 1.4404 0.3613 20 6 4.2898 0.9099 -0.7991 21 6 3.6918 0.5906 1.6096 22 1 -0.3632 -0.9895 0.2774 23 1 -0.3633 0.7350 0.7182 24 1 -0.3633 0.2545 -0.9956 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.2764 1.6790 -4.7299 28 1 4.8532 5.0277 -1.2153 29 1 3.2444 5.7647 -1.0232 30 1 4.2578 5.4544 0.4069 31 1 3.3500 3.2154 1.5759 32 1 4.9058 2.9737 0.7502 33 1 5.3458 0.9643 -0.5347 34 1 4.0189 -0.1263 -1.0016 35 1 4.1062 1.5137 -1.6878 36 1 2.9957 0.8872 2.3942 37 1 3.5408 -0.4616 1.3685 38 1 4.7146 0.7411 1.9554 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220399844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:43 Heat of formation + Delta-G solvation = -12.549745 kcal Electronic energy + Delta-G solvation = -19230.907712 eV Core-core repulsion = 16495.142256 eV Total energy + Delta-G solvation = -2735.765456 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95439 -37.11822 -34.89719 -32.80459 -31.75743 -29.79946 -27.14219 -26.94471 -26.34406 -25.25300 -22.50851 -21.33447 -19.53688 -17.02622 -16.78188 -16.06070 -15.45439 -14.88731 -14.54166 -14.23730 -13.74431 -13.46748 -13.24000 -12.82638 -12.41064 -11.95698 -11.92215 -11.82941 -11.71587 -11.45551 -11.43525 -10.97474 -10.93560 -10.84496 -10.72712 -10.49162 -10.29944 -9.95123 -9.51691 -9.22593 -8.57706 -8.23478 -7.82254 -7.32542 -6.03542 -4.01965 3.34108 3.39767 3.42893 3.91380 4.02332 4.44772 4.70790 5.10771 5.24069 5.39374 5.50880 5.65130 5.73351 5.80656 5.88101 5.92794 6.03859 6.10012 6.21906 6.23912 6.28988 6.34466 6.37806 6.49471 6.64469 6.66465 6.75192 7.02754 7.20368 7.29165 7.53726 7.75423 7.90115 8.03176 8.40601 8.53415 9.00522 9.53088 9.59124 11.05715 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.011608 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.330189 B = 2411.598228 C = 3156.070668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 N -0.521 5.521 4 C 0.196 3.804 5 H 0.068 0.932 6 C -0.487 4.487 7 H 0.067 0.933 8 C 0.074 3.926 9 N -0.877 5.877 10 Si 0.897 3.103 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.519 3.481 15 O -0.534 6.534 16 N -0.629 5.629 17 C 0.084 3.916 18 C 0.143 3.857 19 C 0.082 3.918 20 C -0.175 4.175 21 C -0.135 4.135 22 H 0.024 0.976 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.263 0.737 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.878 -2.485 9.263 11.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 N -0.247 5.247 4 C 0.087 3.913 5 H 0.086 0.914 6 C -0.526 4.526 7 H 0.085 0.915 8 C -0.131 4.131 9 N -0.513 5.513 10 Si 0.724 3.276 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.309 3.691 15 O -0.408 6.408 16 N -0.367 5.367 17 C -0.060 4.060 18 C 0.019 3.981 19 C -0.009 4.009 20 C -0.234 4.234 21 C -0.193 4.193 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.110 0.890 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.402 -1.830 8.911 11.124 hybrid contribution -0.271 -0.211 -0.805 0.875 sum 6.131 -2.042 8.106 10.367 Atomic orbital electron populations 1.22083 0.94758 0.98032 1.05217 1.21874 0.96885 0.88717 0.98539 1.63027 1.11726 1.17028 1.32953 1.19572 0.97449 0.87750 0.86506 0.91424 1.20545 0.89579 1.48934 0.93510 0.91499 1.24937 0.98097 0.94055 0.96004 1.69887 1.34840 1.46745 0.99878 0.86590 0.85007 0.78940 0.77066 1.20035 1.21315 1.19923 1.21831 0.76239 0.91769 0.79294 1.90562 1.61381 1.52405 1.36439 1.47818 1.42195 1.15725 1.30920 1.21445 0.98167 0.86216 1.00164 1.21267 0.97657 0.89340 0.89885 1.21374 0.90590 0.93933 0.95020 1.22441 0.99378 1.01570 1.00025 1.21864 1.01001 0.99507 0.96946 0.95717 0.92887 0.88997 0.95721 0.92502 0.92681 0.94147 0.90916 0.92731 0.92368 0.92198 0.93023 0.92507 0.91828 0.91648 0.92089 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.57 37.16 0.32 -2.52 16 2 C 0.07 1.29 4.88 -3.82 -0.02 1.27 16 3 N -0.52 -10.71 4.36 -213.91 -0.93 -11.64 16 4 C 0.20 4.91 1.38 -70.24 -0.10 4.81 16 5 H 0.07 1.89 5.75 -51.93 -0.30 1.59 16 6 C -0.49 -13.26 4.66 -34.44 -0.16 -13.42 16 7 H 0.07 1.84 6.99 -52.48 -0.37 1.47 16 8 C 0.07 2.07 5.12 -17.82 -0.09 1.98 16 9 N -0.88 -25.75 12.79 55.43 0.71 -25.04 16 10 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.52 13.16 6.27 -11.68 -0.07 13.08 16 15 O -0.53 -15.66 15.74 5.55 0.09 -15.57 16 16 N -0.63 -12.76 3.11 -182.48 -0.57 -13.33 16 17 C 0.08 1.43 10.31 59.85 0.62 2.05 16 18 C 0.14 2.34 5.24 -4.32 -0.02 2.31 16 19 C 0.08 1.37 0.69 -131.46 -0.09 1.28 16 20 C -0.18 -2.97 7.62 37.16 0.28 -2.69 16 21 C -0.14 -1.76 7.56 37.16 0.28 -1.48 16 22 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 1.06 7.79 -51.93 -0.40 0.65 16 24 H 0.09 2.12 5.49 -51.93 -0.29 1.83 16 25 H 0.02 0.50 7.24 -51.93 -0.38 0.12 16 26 H 0.06 0.92 5.47 -51.93 -0.28 0.63 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.39 7.21 -51.93 -0.37 1.01 16 30 H 0.05 0.74 8.03 -51.93 -0.42 0.32 16 31 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 32 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.95 7.20 -51.93 -0.37 0.57 16 35 H 0.06 1.30 5.72 -51.93 -0.30 1.00 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.77 6.52 -51.93 -0.34 0.43 16 38 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 LS Contribution 287.81 15.07 4.34 4.34 Total: -1.00 -31.64 287.81 -6.35 -37.99 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.91 Total: -0.15 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 0.95 Total: 6.66 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.79 Total: -50.01 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.09 Total: -15.57 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.64 -6.35 -37.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220399844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.438 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds