Wall clock time and date at job start Mon Mar 30 2020 03:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47254 * 2 1 4 4 C 1.46902 * 111.00041 * 287.64826 * 3 2 1 5 5 H 1.09003 * 109.38833 * 306.48904 * 4 3 2 6 6 C 1.50697 * 109.38556 * 66.28197 * 4 3 2 7 7 H 1.08003 * 120.00052 * 35.03604 * 6 4 3 8 8 C 1.37877 * 119.99997 * 215.04003 * 6 4 3 9 9 N 1.31515 * 119.99990 * 359.97438 * 8 6 4 10 10 Si 1.86808 * 120.00142 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46826 * 59.99947 * 10 8 6 12 12 H 1.48498 * 109.47060 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46857 * 299.99853 * 10 8 6 14 14 C 1.50249 * 109.97877 * 186.33165 * 4 3 2 15 15 O 1.21285 * 118.62965 * 197.20234 * 14 4 3 16 16 N 1.33716 * 122.75227 * 17.20340 * 14 4 3 17 17 C 1.46502 * 118.53762 * 178.33359 * 16 14 4 18 18 C 1.46012 * 122.92716 * 358.31221 * 16 14 4 19 19 C 1.47190 * 111.00258 * 164.75621 * 3 2 1 20 20 C 1.52996 * 109.59379 * 72.58977 * 19 3 2 21 21 C 1.53002 * 109.59097 * 312.14216 * 19 3 2 22 22 H 1.08999 * 109.46643 * 195.66165 * 1 2 3 23 23 H 1.08995 * 109.46873 * 315.66126 * 1 2 3 24 24 H 1.08998 * 109.47142 * 75.66017 * 1 2 3 25 25 H 1.08998 * 109.47121 * 240.00236 * 2 1 3 26 26 H 1.09000 * 109.47575 * 120.00126 * 2 1 3 27 27 H 0.97004 * 119.99875 * 180.02562 * 9 8 6 28 28 H 1.08999 * 109.47447 * 269.97466 * 17 16 14 29 29 H 1.08996 * 109.47123 * 29.97971 * 17 16 14 30 30 H 1.09004 * 109.47228 * 149.98094 * 17 16 14 31 31 H 1.09000 * 109.37334 * 257.98629 * 18 16 14 32 32 H 1.09002 * 109.37635 * 138.33785 * 18 16 14 33 33 H 1.08997 * 109.47283 * 179.24126 * 20 19 3 34 34 H 1.09001 * 109.47569 * 299.24611 * 20 19 3 35 35 H 1.09002 * 109.47078 * 59.24740 * 20 19 3 36 36 H 1.08999 * 109.47172 * 307.72348 * 21 19 3 37 37 H 1.08996 * 109.47505 * 67.73027 * 21 19 3 38 38 H 1.09007 * 109.46622 * 187.73299 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8032 2.0199 -1.3069 5 1 2.2396 1.3977 -2.0883 6 6 0.3237 2.1670 -1.5526 7 1 -0.3421 2.3786 -0.7289 8 6 -0.1800 2.0313 -2.8289 9 7 0.6307 1.7741 -3.8319 10 14 -2.0142 2.2129 -3.1334 11 1 -2.4532 3.5690 -2.7166 12 1 -2.2970 2.0240 -4.5789 13 1 -2.7501 1.1908 -2.3468 14 6 2.4480 3.3768 -1.3315 15 8 2.1125 4.1642 -2.1909 16 7 3.3763 3.7528 -0.4456 17 6 3.9710 5.0852 -0.5778 18 6 3.8235 2.8948 0.6479 19 6 3.4455 1.4404 0.3613 20 6 4.2898 0.9099 -0.7991 21 6 3.6918 0.5906 1.6096 22 1 -0.3632 -0.9895 0.2774 23 1 -0.3633 0.7350 0.7182 24 1 -0.3633 0.2545 -0.9956 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.2764 1.6790 -4.7299 28 1 4.8532 5.0277 -1.2153 29 1 3.2444 5.7647 -1.0232 30 1 4.2578 5.4544 0.4069 31 1 3.3500 3.2154 1.5759 32 1 4.9058 2.9737 0.7502 33 1 5.3458 0.9643 -0.5347 34 1 4.0189 -0.1263 -1.0016 35 1 4.1062 1.5137 -1.6878 36 1 2.9957 0.8872 2.3942 37 1 3.5408 -0.4616 1.3685 38 1 4.7146 0.7411 1.9554 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220399844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:43 Heat of formation + Delta-G solvation = -36.003343 kcal Electronic energy + Delta-G solvation = -19231.924736 eV Core-core repulsion = 16495.142256 eV Total energy + Delta-G solvation = -2736.782480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60323 -38.85352 -36.60865 -34.69549 -33.42391 -31.48149 -28.70652 -28.28794 -27.98335 -26.80467 -24.35259 -22.89995 -21.13547 -18.79778 -18.52361 -17.76092 -17.19422 -16.61286 -16.28723 -15.92265 -15.33211 -15.07923 -14.58310 -14.32311 -14.25490 -13.55184 -13.45128 -13.27840 -13.17802 -13.08967 -12.85209 -12.69892 -12.60267 -12.51463 -12.20584 -12.11025 -11.79522 -11.59450 -11.24077 -11.17360 -10.64235 -10.20263 -9.45020 -9.00429 -8.14302 -6.17086 1.36988 1.41580 1.47295 2.07275 2.35167 2.45271 3.11937 3.31840 3.80658 4.01176 4.19381 4.22191 4.43359 4.55132 4.59761 4.62908 4.72944 4.75302 4.86070 4.90456 4.94326 4.98623 5.02907 5.07490 5.15439 5.20409 5.31242 5.46113 5.52311 5.66840 5.72023 5.88729 5.99900 6.31222 6.61732 6.75272 6.95139 7.43522 7.67130 8.94588 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.011608 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.330189 B = 2411.598228 C = 3156.070668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 N -0.525 5.525 4 C 0.204 3.796 5 H 0.030 0.970 6 C -0.486 4.486 7 H 0.058 0.942 8 C 0.023 3.977 9 N -0.916 5.916 10 Si 0.949 3.051 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.254 1.254 14 C 0.510 3.490 15 O -0.591 6.591 16 N -0.625 5.625 17 C 0.081 3.919 18 C 0.133 3.867 19 C 0.073 3.927 20 C -0.168 4.168 21 C -0.127 4.127 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.004 0.996 26 H 0.097 0.903 27 H 0.260 0.740 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.018 0.982 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 -3.121 12.416 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.059 4.059 3 N -0.251 5.251 4 C 0.094 3.906 5 H 0.048 0.952 6 C -0.525 4.525 7 H 0.076 0.924 8 C -0.177 4.177 9 N -0.555 5.555 10 Si 0.775 3.225 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.178 1.178 14 C 0.300 3.700 15 O -0.470 6.470 16 N -0.360 5.360 17 C -0.061 4.061 18 C 0.011 3.989 19 C -0.017 4.017 20 C -0.227 4.227 21 C -0.184 4.184 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.023 0.977 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.777 -2.487 12.139 14.630 hybrid contribution -0.570 -0.013 -1.670 1.765 sum 7.208 -2.500 10.469 12.954 Atomic orbital electron populations 1.21946 0.95496 0.99543 1.02684 1.21953 0.96352 0.88171 0.99411 1.62910 1.14934 1.17614 1.29681 1.19212 0.95919 0.87739 0.87738 0.95234 1.20737 0.90962 1.47656 0.93106 0.92368 1.25656 1.01873 0.94206 0.95975 1.70030 1.36430 1.49006 1.00003 0.85756 0.80826 0.78832 0.77130 1.20717 1.21171 1.17779 1.21747 0.77195 0.91418 0.79668 1.90520 1.63671 1.53865 1.38935 1.47769 1.40464 1.17358 1.30400 1.21633 0.97460 0.84090 1.02942 1.21690 1.00330 0.88160 0.88743 1.21692 0.87945 0.95426 0.96671 1.22370 1.01606 1.00374 0.98326 1.21825 1.03319 0.98714 0.94578 0.92691 0.93368 0.92869 0.97731 0.88458 0.93156 0.92931 0.93676 0.88057 0.90651 0.87957 0.89551 0.92896 0.96326 0.91124 0.91594 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.57 71.98 0.62 -4.80 16 2 C 0.07 2.53 4.88 86.30 0.42 2.95 16 3 N -0.53 -21.10 4.36 -830.69 -3.62 -24.72 16 4 C 0.20 10.53 1.38 43.28 0.06 10.59 16 5 H 0.03 1.78 5.75 -2.39 -0.01 1.76 16 6 C -0.49 -27.44 4.66 25.60 0.12 -27.32 16 7 H 0.06 3.29 6.99 -2.91 -0.02 3.27 16 8 C 0.02 1.36 5.12 84.65 0.43 1.79 16 9 N -0.92 -56.73 12.79 21.45 0.27 -56.46 16 10 Si 0.95 46.11 29.54 68.60 2.03 48.14 16 11 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 12 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 13 H -0.25 -11.34 7.11 99.48 0.71 -10.64 16 14 C 0.51 26.49 6.27 87.68 0.55 27.04 16 15 O -0.59 -36.30 15.74 -3.04 -0.05 -36.34 16 16 N -0.63 -24.50 3.11 -850.21 -2.65 -27.15 16 17 C 0.08 2.64 10.31 127.77 1.32 3.96 16 18 C 0.13 3.83 5.24 86.46 0.45 4.28 16 19 C 0.07 2.23 0.69 3.46 0.00 2.23 16 20 C -0.17 -5.42 7.62 71.98 0.55 -4.87 16 21 C -0.13 -2.64 7.56 71.98 0.54 -2.10 16 22 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.05 1.88 7.79 -2.39 -0.02 1.86 16 24 H 0.05 2.49 5.49 -2.39 -0.01 2.47 16 25 H 0.00 0.18 7.24 -2.39 -0.02 0.16 16 26 H 0.10 2.80 5.47 -2.39 -0.01 2.79 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.72 7.21 -2.39 -0.02 1.70 16 30 H 0.10 2.33 8.03 -2.38 -0.02 2.31 16 31 H 0.08 1.99 8.11 -2.39 -0.02 1.97 16 32 H 0.10 2.16 8.10 -2.39 -0.02 2.14 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.71 7.20 -2.39 -0.02 1.69 16 35 H 0.02 0.74 5.72 -2.39 -0.01 0.73 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.33 6.52 -2.39 -0.02 1.32 16 38 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -74.65 287.81 2.09 -72.56 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.04 Total: 10.21 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 5.07 Total: 13.76 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -5.99 Total: -108.33 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.05 Total: -36.34 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -74.65 2.09 -72.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220399844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.560 kcal (2) G-P(sol) polarization free energy of solvation -74.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds