Wall clock time and date at job start Mon Mar 30 2020 03:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47266 * 2 1 4 4 C 1.47186 * 110.99859 * 208.50288 * 3 2 1 5 5 C 1.52981 * 108.73394 * 305.63632 * 4 3 2 6 6 C 1.52996 * 109.37788 * 189.53840 * 5 4 3 7 7 C 1.52993 * 109.28343 * 69.82018 * 5 4 3 8 8 N 1.46013 * 110.03755 * 309.70753 * 5 4 3 9 9 C 1.46504 * 118.53645 * 198.18360 * 8 5 4 10 10 C 1.33713 * 122.92737 * 18.16245 * 8 5 4 11 11 O 1.21290 * 118.62293 * 178.29386 * 10 8 5 12 12 C 1.46898 * 110.99654 * 85.61408 * 3 2 1 13 13 H 1.09002 * 109.29982 * 193.16694 * 12 3 2 14 14 C 1.50694 * 109.38736 * 312.90801 * 12 3 2 15 15 H 1.08008 * 119.99698 * 84.86877 * 14 12 3 16 16 C 1.37880 * 120.00658 * 264.87043 * 14 12 3 17 17 N 1.31518 * 119.99194 * 357.86395 * 16 14 12 18 18 Si 1.86791 * 120.00527 * 177.86867 * 16 14 12 19 19 H 1.48504 * 109.47002 * 59.99755 * 18 16 14 20 20 H 1.48500 * 109.47101 * 300.00200 * 18 16 14 21 21 H 1.48498 * 109.47275 * 179.97438 * 18 16 14 22 22 H 1.09000 * 109.47128 * 174.72314 * 1 2 3 23 23 H 1.09000 * 109.47201 * 294.72891 * 1 2 3 24 24 H 1.09005 * 109.46825 * 54.72623 * 1 2 3 25 25 H 1.09007 * 109.46915 * 240.00363 * 2 1 3 26 26 H 1.09000 * 109.46898 * 120.00389 * 2 1 3 27 27 H 1.09004 * 109.59672 * 185.85912 * 4 3 2 28 28 H 1.09008 * 109.71863 * 65.48235 * 4 3 2 29 29 H 1.08997 * 109.47262 * 180.58277 * 6 5 4 30 30 H 1.09005 * 109.46637 * 300.57592 * 6 5 4 31 31 H 1.08994 * 109.47914 * 60.57357 * 6 5 4 32 32 H 1.08994 * 109.47512 * 275.65950 * 7 5 4 33 33 H 1.09002 * 109.47028 * 35.65960 * 7 5 4 34 34 H 1.09004 * 109.47040 * 155.65805 * 7 5 4 35 35 H 1.09001 * 109.47195 * 179.97438 * 9 8 5 36 36 H 1.09002 * 109.47023 * 299.98200 * 9 8 5 37 37 H 1.08995 * 109.47316 * 59.97686 * 9 8 5 38 38 H 0.96994 * 120.00265 * 5.95338 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3340 1.4797 -0.6557 5 6 4.2904 0.4924 0.0158 6 6 5.7136 0.7424 -0.4872 7 6 3.8711 -0.9362 -0.3363 8 7 4.2516 0.6653 1.4651 9 6 5.3546 0.1257 2.2641 10 6 3.2544 1.2946 2.0955 11 8 3.2858 1.3664 3.3059 12 6 2.0963 1.9162 1.3674 13 1 2.2324 2.9969 1.3270 14 6 0.8175 1.6001 2.0992 15 1 0.6958 0.6434 2.5855 16 6 -0.1974 2.5322 2.1481 17 7 -0.0333 3.7127 1.5920 18 14 -1.8053 2.1183 3.0040 19 1 -1.5396 1.8022 4.4304 20 1 -2.4290 0.9431 2.3444 21 1 -2.7253 3.2809 2.9181 22 1 -0.3633 -1.0233 -0.0945 23 1 -0.3633 0.4299 0.9334 24 1 -0.3633 0.5935 -0.8390 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 3.7223 2.4929 -0.5518 28 1 3.2363 1.2324 -1.7129 29 1 6.3948 0.0329 -0.0175 30 1 5.7443 0.6137 -1.5692 31 1 6.0155 1.7585 -0.2335 32 1 3.0898 -1.2649 0.3488 33 1 3.4929 -0.9624 -1.3583 34 1 4.7321 -1.5992 -0.2505 35 1 5.1766 0.3367 3.3186 36 1 5.4181 -0.9521 2.1148 37 1 6.2900 0.5912 1.9535 38 1 0.7656 3.8979 1.0740 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220400261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:02 Heat of formation + Delta-G solvation = 0.670940 kcal Electronic energy + Delta-G solvation = -19374.708476 eV Core-core repulsion = 16639.516312 eV Total energy + Delta-G solvation = -2735.192164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.57618 -37.04535 -35.67852 -32.63117 -31.56331 -30.44485 -27.57706 -27.42465 -26.33686 -24.19597 -22.65157 -21.42137 -20.41806 -17.77167 -17.04578 -16.16771 -15.74415 -14.99736 -14.62049 -14.14980 -13.83306 -13.71785 -13.31876 -12.85025 -12.77137 -12.31146 -11.98022 -11.76227 -11.68994 -11.59138 -11.49576 -11.32268 -11.07101 -10.74391 -10.64852 -10.33213 -10.27647 -10.11503 -9.63888 -9.16017 -8.74189 -8.35757 -8.14798 -7.18424 -6.42881 -4.10054 3.41217 3.45655 3.55670 3.60590 3.64147 4.49536 4.68764 4.92790 5.11738 5.19949 5.32942 5.52980 5.59542 5.69064 5.74896 5.76841 5.86626 5.89481 6.01349 6.04643 6.08635 6.14126 6.29333 6.34095 6.45012 6.53260 6.67904 6.85518 6.99683 7.06833 7.42682 7.67124 7.92864 8.25694 8.27054 8.35502 8.77098 9.11679 9.55621 10.96259 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031083 B = 0.009874 C = 0.008872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.611137 B = 2834.914090 C = 3155.136047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.068 3.932 3 N -0.520 5.520 4 C 0.042 3.958 5 C 0.135 3.865 6 C -0.150 4.150 7 C -0.174 4.174 8 N -0.615 5.615 9 C 0.074 3.926 10 C 0.492 3.508 11 O -0.547 6.547 12 C 0.184 3.816 13 H 0.082 0.918 14 C -0.559 4.559 15 H 0.054 0.946 16 C 0.037 3.963 17 N -0.893 5.893 18 Si 1.063 2.937 19 H -0.286 1.286 20 H -0.283 1.283 21 H -0.281 1.281 22 H 0.025 0.975 23 H 0.102 0.898 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 -7.309 -6.222 12.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.059 4.059 3 N -0.244 5.244 4 C -0.087 4.087 5 C 0.048 3.952 6 C -0.209 4.209 7 C -0.232 4.232 8 N -0.351 5.351 9 C -0.070 4.070 10 C 0.280 3.720 11 O -0.422 6.422 12 C 0.076 3.924 13 H 0.099 0.901 14 C -0.598 4.598 15 H 0.072 0.928 16 C -0.170 4.170 17 N -0.528 5.528 18 Si 0.891 3.109 19 H -0.212 1.212 20 H -0.209 1.209 21 H -0.206 1.206 22 H 0.044 0.956 23 H 0.120 0.880 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.223 -6.296 -5.388 10.363 hybrid contribution 2.423 -1.283 -0.160 2.746 sum 8.646 -7.579 -5.548 12.766 Atomic orbital electron populations 1.22289 0.95326 0.98345 1.05586 1.22281 0.96659 0.88963 0.98016 1.63347 1.21000 1.20025 1.20020 1.22682 0.89682 0.97919 0.98459 1.21065 0.96729 0.96634 0.80800 1.22127 0.95581 1.01994 1.01196 1.22947 1.01966 0.95852 1.02422 1.47837 1.22839 1.58280 1.06184 1.21538 0.89606 0.97465 0.98352 1.22573 0.83301 0.76850 0.89229 1.90542 1.77752 1.58865 1.15024 1.19751 0.91779 0.96727 0.84109 0.90059 1.21276 0.98597 1.04486 1.35456 0.92758 1.25789 1.02389 0.92627 0.96229 1.70754 1.30558 1.20872 1.30591 0.83653 0.75191 0.75931 0.76145 1.21238 1.20896 1.20574 0.95618 0.87983 0.93637 0.92895 0.94799 0.91024 0.90181 0.92403 0.91519 0.92285 0.90093 0.91495 0.93490 0.89819 0.93553 0.93228 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.76 37.16 0.36 -2.92 16 2 C 0.07 1.35 3.30 -3.82 -0.01 1.33 16 3 N -0.52 -11.04 4.85 -229.46 -1.11 -12.15 16 4 C 0.04 0.72 4.85 -3.68 -0.02 0.70 16 5 C 0.14 2.09 0.77 -132.10 -0.10 1.99 16 6 C -0.15 -1.83 7.63 37.16 0.28 -1.55 16 7 C -0.17 -2.45 7.19 37.15 0.27 -2.18 16 8 N -0.62 -11.65 2.63 -167.44 -0.44 -12.09 16 9 C 0.07 1.20 9.49 59.85 0.57 1.76 16 10 C 0.49 11.76 6.20 -11.68 -0.07 11.69 16 11 O -0.55 -14.98 15.51 5.55 0.09 -14.90 16 12 C 0.18 4.58 2.35 -70.24 -0.17 4.41 16 13 H 0.08 2.22 6.25 -51.93 -0.32 1.89 16 14 C -0.56 -15.17 4.36 -34.44 -0.15 -15.32 16 15 H 0.05 1.53 7.51 -52.48 -0.39 1.14 16 16 C 0.04 1.03 5.04 -17.82 -0.09 0.94 16 17 N -0.89 -25.98 13.61 55.43 0.75 -25.23 16 18 Si 1.06 24.82 29.21 -169.99 -4.96 19.85 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.10 2.43 3.80 -51.93 -0.20 2.23 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.89 5.23 -51.92 -0.27 0.62 16 26 H 0.03 0.73 5.00 -51.93 -0.26 0.47 16 27 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 28 H 0.08 1.18 7.88 -51.92 -0.41 0.77 16 29 H 0.06 0.65 6.91 -51.93 -0.36 0.29 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.33 4.80 -51.93 -0.25 1.08 16 33 H 0.07 0.85 6.58 -51.93 -0.34 0.50 16 34 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 35 H 0.08 1.54 6.67 -51.93 -0.35 1.19 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.68 6.95 -51.93 -0.36 0.32 16 38 H 0.27 7.96 6.50 -40.82 -0.27 7.70 16 LS Contribution 278.83 15.07 4.20 4.20 Total: -1.00 -30.88 278.83 -6.12 -37.00 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.52 Total: 2.45 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 0.87 Total: 0.86 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.80 Total: -49.47 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.09 Total: -14.90 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -4.96 Total: 19.85 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.88 -6.12 -37.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220400261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.667 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds